Wall clock time and date at job start Wed Apr 1 2020 04:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47365 * 90.79590 * 3 2 1 5 5 C 1.53001 * 109.46609 * 210.79713 * 3 2 1 6 6 N 1.46895 * 109.46895 * 330.79425 * 3 2 1 7 7 C 1.46906 * 111.00140 * 56.04909 * 6 3 2 8 8 C 1.38581 * 110.99844 * 179.97438 * 6 3 2 9 9 N 1.31214 * 126.47105 * 347.10351 * 8 6 3 10 10 N 1.28529 * 109.85626 * 179.82009 * 9 8 6 11 11 C 1.30297 * 110.05799 * 0.45071 * 10 9 8 12 12 C 1.50696 * 126.34873 * 179.69265 * 11 10 9 13 13 C 1.53002 * 109.47159 * 276.66391 * 12 11 10 14 14 C 1.52999 * 109.47164 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47009 * 180.02562 * 14 13 12 16 16 H 1.07993 * 119.99772 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99691 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00112 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99834 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47096 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47323 * 120.00632 * 19 17 15 22 22 H 1.48504 * 109.47049 * 240.00432 * 19 17 15 23 23 N 1.36455 * 126.47086 * 167.40960 * 8 6 3 24 24 C 1.46503 * 127.13866 * 0.02646 * 23 8 6 25 25 C 1.52995 * 109.46976 * 276.58053 * 24 23 8 26 26 H 1.09002 * 110.75490 * 57.53047 * 25 24 23 27 27 C 1.55304 * 110.85001 * 181.23140 * 25 24 23 28 28 C 1.54946 * 100.94803 * 152.32188 * 27 25 24 29 29 O 1.43650 * 105.13079 * 323.55462 * 28 27 25 30 30 C 1.43234 * 109.97313 * 24.43026 * 29 28 27 31 31 H 4.18748 * 15.03868 * 359.97438 * 4 2 1 32 32 H 1.08990 * 109.47169 * 299.99585 * 5 3 2 33 33 H 1.09005 * 109.47191 * 60.00203 * 5 3 2 34 34 H 1.09004 * 109.46646 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47152 * 55.82235 * 7 6 3 36 36 H 1.08997 * 109.47427 * 175.82402 * 7 6 3 37 37 H 1.08996 * 109.46830 * 295.82755 * 7 6 3 38 38 H 1.08991 * 109.47279 * 36.67285 * 12 11 10 39 39 H 1.09001 * 109.46806 * 156.66914 * 12 11 10 40 40 H 1.09000 * 109.47537 * 300.00765 * 13 12 11 41 41 H 1.09001 * 109.46834 * 60.00541 * 13 12 11 42 42 H 1.09002 * 109.47101 * 300.00414 * 14 13 12 43 43 H 1.09001 * 109.46829 * 60.00506 * 14 13 12 44 44 H 0.96998 * 119.99837 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.47137 * 36.57694 * 24 23 8 46 46 H 1.09003 * 109.46829 * 156.57879 * 24 23 8 47 47 H 1.09006 * 111.12521 * 270.24607 * 27 25 24 48 48 H 1.09001 * 111.12316 * 34.40037 * 27 25 24 49 49 H 1.08990 * 110.31096 * 204.64096 * 28 27 25 50 50 H 1.09001 * 110.39117 * 82.50770 * 28 27 25 51 51 H 1.08999 * 109.82935 * 238.77137 * 30 29 28 52 52 H 1.08998 * 109.83512 * 117.80066 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0094 0.0151 -1.0275 5 6 3.1554 1.2400 0.7386 6 7 3.1362 -1.2080 0.6758 7 6 2.5901 -2.4195 0.0495 8 6 4.5215 -1.2400 0.6933 9 7 5.3282 -0.4755 -0.0042 10 7 6.5500 -0.7739 0.2606 11 6 6.5950 -1.7448 1.1283 12 6 7.8388 -2.3845 1.6894 13 6 8.3449 -3.4533 0.7186 14 6 9.6073 -4.1032 1.2885 15 6 10.1062 -5.1555 0.3320 16 1 9.5761 -5.3418 -0.5902 17 6 11.2399 -5.8797 0.6339 18 7 11.8857 -5.6524 1.7568 19 14 11.8587 -7.1836 -0.5519 20 1 10.9614 -7.2438 -1.7337 21 1 13.2344 -6.8392 -0.9926 22 1 11.8726 -8.5040 0.1274 23 7 5.3042 -2.0763 1.4349 24 6 4.8550 -3.1144 2.3659 25 6 4.5492 -2.4825 3.7253 26 1 3.7977 -1.6992 3.6269 27 6 4.0988 -3.5614 4.7476 28 6 4.5464 -2.9094 6.0800 29 8 5.7803 -2.2404 5.7741 30 6 5.8356 -1.9309 4.3767 31 1 -1.0500 -0.0005 -0.0001 32 1 2.7917 2.1368 0.2372 33 1 2.7920 1.2255 1.7662 34 1 4.2454 1.2403 0.7390 35 1 2.8312 -2.4193 -1.0135 36 1 3.0261 -3.3003 0.5208 37 1 1.5077 -2.4377 0.1765 38 1 8.6079 -1.6246 1.8265 39 1 7.6085 -2.8457 2.6498 40 1 7.5756 -4.2133 0.5815 41 1 8.5752 -2.9921 -0.2418 42 1 10.3768 -3.3434 1.4259 43 1 9.3767 -4.5645 2.2488 44 1 12.6831 -6.1621 1.9694 45 1 3.9546 -3.5883 1.9748 46 1 5.6389 -3.8630 2.4812 47 1 3.0179 -3.7002 4.7218 48 1 4.6181 -4.5046 4.5778 49 1 4.7089 -3.6740 6.8395 50 1 3.8008 -2.1910 6.4206 51 1 6.7093 -2.4034 3.9277 52 1 5.8861 -0.8509 4.2388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349209213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:27 Heat of formation + Delta-G solvation = 93.497001 kcal Electronic energy + Delta-G solvation = -31440.064433 eV Core-core repulsion = 27442.990649 eV Total energy + Delta-G solvation = -3997.073784 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.06011 -39.69417 -38.64555 -35.84051 -34.85955 -33.54296 -32.59552 -32.17287 -30.83766 -29.86145 -29.69172 -27.56040 -26.45206 -25.51157 -24.23060 -23.76341 -22.80274 -21.55579 -21.13396 -20.42376 -20.04293 -18.24344 -17.47444 -17.05577 -16.76530 -16.34876 -16.29094 -15.84815 -15.24859 -15.18685 -14.94548 -14.53110 -14.38668 -14.12663 -13.81698 -13.67065 -13.46861 -13.14509 -12.79877 -12.67442 -12.40616 -12.30813 -12.09803 -11.96587 -11.84256 -11.74155 -11.63027 -11.42266 -11.15398 -11.10830 -11.06800 -10.88686 -10.77335 -10.63952 -10.54721 -10.43738 -10.10542 -9.86535 -9.70973 -9.59936 -9.40580 -9.12177 -8.37592 -8.30152 -6.02358 -4.04702 1.74209 1.92500 2.49095 2.54157 2.92052 3.29680 3.37632 3.41643 3.49886 3.61696 3.95061 4.00792 4.23917 4.38457 4.42992 4.46647 4.61527 4.74134 4.80283 4.85680 4.87653 4.95467 4.96675 5.00643 5.11278 5.20468 5.29070 5.33875 5.37578 5.41565 5.45386 5.45887 5.54712 5.62188 5.66599 5.74016 5.76724 5.79824 5.82530 5.99712 6.04702 6.11821 6.35257 6.55671 6.57991 6.72731 6.76988 7.00106 7.09370 7.23936 7.63081 7.75620 7.96746 8.38935 8.85400 9.02037 9.59666 11.08868 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010170 B = 0.002951 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.401400 B = 9486.658332 C =11094.504199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.177 4.177 3 C 0.209 3.791 4 H 0.085 0.915 5 C -0.145 4.145 6 N -0.451 5.451 7 C 0.021 3.979 8 C 0.342 3.658 9 N -0.317 5.317 10 N -0.285 5.285 11 C 0.207 3.793 12 C -0.041 4.041 13 C -0.102 4.102 14 C 0.022 3.978 15 C -0.520 4.520 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.284 1.284 23 N -0.474 5.474 24 C 0.117 3.883 25 C -0.136 4.136 26 H 0.097 0.903 27 C -0.148 4.148 28 C 0.052 3.948 29 O -0.379 6.379 30 C 0.049 3.951 31 H 0.220 0.780 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.021 0.979 43 H 0.017 0.983 44 H 0.260 0.740 45 H 0.098 0.902 46 H 0.107 0.893 47 H 0.087 0.913 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.059 0.941 51 H 0.082 0.918 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.855 7.696 4.352 26.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.103 3.897 4 H 0.103 0.897 5 C -0.203 4.203 6 N -0.176 5.176 7 C -0.126 4.126 8 C -0.015 4.015 9 N -0.161 5.161 10 N -0.123 5.123 11 C -0.060 4.060 12 C -0.081 4.081 13 C -0.140 4.140 14 C -0.015 4.015 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.210 1.210 23 N -0.168 5.168 24 C -0.006 4.006 25 C -0.155 4.155 26 H 0.115 0.885 27 C -0.186 4.186 28 C -0.024 4.024 29 O -0.298 6.298 30 C -0.027 4.027 31 H 0.237 0.763 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.039 0.961 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.116 0.884 46 H 0.125 0.875 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.106 0.894 50 H 0.078 0.922 51 H 0.100 0.900 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.241 8.774 4.108 26.106 hybrid contribution -0.367 -1.884 -0.604 2.013 sum -24.609 6.890 3.503 25.794 Atomic orbital electron populations 1.24894 0.95734 0.99217 1.00709 1.22589 0.93611 1.01147 1.00440 1.18407 0.84087 0.89087 0.98135 0.89695 1.21903 1.03560 0.94715 1.00106 1.58719 1.00132 1.04543 1.54167 1.22602 1.01440 0.90483 0.98066 1.22222 0.90009 0.94221 0.95001 1.74564 0.96515 1.24277 1.20788 1.74042 1.11673 1.12696 1.13914 1.25283 0.85595 0.96535 0.98622 1.20533 0.89174 0.99240 0.99135 1.21657 0.99727 0.94898 0.97761 1.19106 0.90822 0.95341 0.96191 1.21238 1.10169 1.19122 1.05293 0.92711 1.25006 0.96703 0.97359 0.95312 1.69965 1.18746 1.41261 1.23344 0.86563 0.78830 0.81557 0.81223 1.19782 1.20944 1.21045 1.46208 1.06543 1.29697 1.34338 1.21954 1.02470 0.88764 0.87402 1.23104 0.99087 0.99222 0.94097 0.88458 1.23280 1.02541 0.98739 0.94033 1.23350 0.86542 0.95682 0.96862 1.88450 1.38510 1.78614 1.24266 1.23416 0.97456 1.00382 0.81427 0.76340 0.91346 0.92109 0.89577 0.93642 0.90798 0.89444 0.88273 0.90241 0.93662 0.92232 0.96107 0.96502 0.93013 0.88374 0.87476 0.89425 0.89501 0.89409 0.92232 0.90020 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 19.25 29.55 0.57 -0.83 16 2 C -0.18 -1.66 11.22 -37.12 -0.42 -2.08 16 3 C 0.21 2.22 2.18 -70.50 -0.15 2.06 16 4 H 0.09 0.97 7.98 -51.93 -0.41 0.56 16 5 C -0.15 -1.54 8.96 37.16 0.33 -1.21 16 6 N -0.45 -4.90 4.65 -177.98 -0.83 -5.73 16 7 C 0.02 0.19 9.03 60.07 0.54 0.73 16 8 C 0.34 4.61 6.29 -318.87 -2.01 2.60 16 9 N -0.32 -5.16 9.58 30.31 0.29 -4.87 16 10 N -0.28 -5.10 12.18 32.99 0.40 -4.70 16 11 C 0.21 3.26 7.07 -154.01 -1.09 2.18 16 12 C -0.04 -0.67 5.27 -27.88 -0.15 -0.82 16 13 C -0.10 -2.01 5.14 -26.73 -0.14 -2.14 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 19 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 N -0.47 -6.15 2.64 -114.08 -0.30 -6.45 16 24 C 0.12 1.15 5.15 -4.04 -0.02 1.13 16 25 C -0.14 -1.24 3.26 -88.67 -0.29 -1.53 16 26 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 27 C -0.15 -1.08 6.62 -24.48 -0.16 -1.24 16 28 C 0.05 0.46 7.78 38.18 0.30 0.75 16 29 O -0.38 -4.78 11.36 -35.23 -0.40 -5.18 16 30 C 0.05 0.58 7.00 37.88 0.27 0.84 16 31 H 0.22 0.85 7.80 -54.09 -0.42 0.42 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.11 5.93 -51.93 -0.31 0.80 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.61 5.63 -51.93 -0.29 0.32 16 37 H 0.09 0.66 7.16 -51.93 -0.37 0.29 16 38 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 39 H 0.08 1.16 4.71 -51.93 -0.24 0.91 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.10 0.78 5.77 -51.93 -0.30 0.48 16 46 H 0.11 1.08 7.34 -51.93 -0.38 0.70 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.62 8.04 -51.93 -0.42 0.20 16 49 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.08 1.02 4.69 -51.93 -0.24 0.78 16 52 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 415.23 15.07 6.26 6.26 Total: -1.00 -33.09 415.23 -10.26 -43.35 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.43 Total: -1.09 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -2.96 Total: -12.36 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.30 Total: -47.44 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.40 Total: -5.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.09 -10.26 -43.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349209213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.848 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds