Wall clock time and date at job start Wed Apr 1 2020 04:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.08997 * 109.47365 * 90.79590 * 3 2 1 5 5 C 1.53001 * 109.46609 * 210.79713 * 3 2 1 6 6 N 1.46895 * 109.46895 * 330.79425 * 3 2 1 7 7 C 1.46906 * 111.00140 * 56.04909 * 6 3 2 8 8 C 1.38581 * 110.99844 * 179.97438 * 6 3 2 9 9 N 1.31214 * 126.47105 * 347.10351 * 8 6 3 10 10 N 1.28529 * 109.85626 * 179.82009 * 9 8 6 11 11 C 1.30297 * 110.05799 * 0.45071 * 10 9 8 12 12 C 1.50696 * 126.34873 * 179.69265 * 11 10 9 13 13 C 1.53002 * 109.47159 * 276.66391 * 12 11 10 14 14 C 1.52999 * 109.47164 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47009 * 180.02562 * 14 13 12 16 16 H 1.07993 * 119.99772 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99691 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00112 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99834 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47096 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47323 * 120.00632 * 19 17 15 22 22 H 1.48504 * 109.47049 * 240.00432 * 19 17 15 23 23 N 1.36455 * 126.47086 * 167.40960 * 8 6 3 24 24 C 1.46503 * 127.13866 * 0.02646 * 23 8 6 25 25 C 1.52995 * 109.46976 * 276.58053 * 24 23 8 26 26 H 1.09002 * 110.75490 * 57.53047 * 25 24 23 27 27 C 1.55304 * 110.85001 * 181.23140 * 25 24 23 28 28 C 1.54946 * 100.94803 * 152.32188 * 27 25 24 29 29 O 1.43650 * 105.13079 * 323.55462 * 28 27 25 30 30 C 1.43234 * 109.97313 * 24.43026 * 29 28 27 31 31 H 4.18748 * 15.03868 * 359.97438 * 4 2 1 32 32 H 1.08990 * 109.47169 * 299.99585 * 5 3 2 33 33 H 1.09005 * 109.47191 * 60.00203 * 5 3 2 34 34 H 1.09004 * 109.46646 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47152 * 55.82235 * 7 6 3 36 36 H 1.08997 * 109.47427 * 175.82402 * 7 6 3 37 37 H 1.08996 * 109.46830 * 295.82755 * 7 6 3 38 38 H 1.08991 * 109.47279 * 36.67285 * 12 11 10 39 39 H 1.09001 * 109.46806 * 156.66914 * 12 11 10 40 40 H 1.09000 * 109.47537 * 300.00765 * 13 12 11 41 41 H 1.09001 * 109.46834 * 60.00541 * 13 12 11 42 42 H 1.09002 * 109.47101 * 300.00414 * 14 13 12 43 43 H 1.09001 * 109.46829 * 60.00506 * 14 13 12 44 44 H 0.96998 * 119.99837 * 179.97438 * 18 17 15 45 45 H 1.09002 * 109.47137 * 36.57694 * 24 23 8 46 46 H 1.09003 * 109.46829 * 156.57879 * 24 23 8 47 47 H 1.09006 * 111.12521 * 270.24607 * 27 25 24 48 48 H 1.09001 * 111.12316 * 34.40037 * 27 25 24 49 49 H 1.08990 * 110.31096 * 204.64096 * 28 27 25 50 50 H 1.09001 * 110.39117 * 82.50770 * 28 27 25 51 51 H 1.08999 * 109.82935 * 238.77137 * 30 29 28 52 52 H 1.08998 * 109.83512 * 117.80066 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 1 3.0094 0.0151 -1.0275 5 6 3.1554 1.2400 0.7386 6 7 3.1362 -1.2080 0.6758 7 6 2.5901 -2.4195 0.0495 8 6 4.5215 -1.2400 0.6933 9 7 5.3282 -0.4755 -0.0042 10 7 6.5500 -0.7739 0.2606 11 6 6.5950 -1.7448 1.1283 12 6 7.8388 -2.3845 1.6894 13 6 8.3449 -3.4533 0.7186 14 6 9.6073 -4.1032 1.2885 15 6 10.1062 -5.1555 0.3320 16 1 9.5761 -5.3418 -0.5902 17 6 11.2399 -5.8797 0.6339 18 7 11.8857 -5.6524 1.7568 19 14 11.8587 -7.1836 -0.5519 20 1 10.9614 -7.2438 -1.7337 21 1 13.2344 -6.8392 -0.9926 22 1 11.8726 -8.5040 0.1274 23 7 5.3042 -2.0763 1.4349 24 6 4.8550 -3.1144 2.3659 25 6 4.5492 -2.4825 3.7253 26 1 3.7977 -1.6992 3.6269 27 6 4.0988 -3.5614 4.7476 28 6 4.5464 -2.9094 6.0800 29 8 5.7803 -2.2404 5.7741 30 6 5.8356 -1.9309 4.3767 31 1 -1.0500 -0.0005 -0.0001 32 1 2.7917 2.1368 0.2372 33 1 2.7920 1.2255 1.7662 34 1 4.2454 1.2403 0.7390 35 1 2.8312 -2.4193 -1.0135 36 1 3.0261 -3.3003 0.5208 37 1 1.5077 -2.4377 0.1765 38 1 8.6079 -1.6246 1.8265 39 1 7.6085 -2.8457 2.6498 40 1 7.5756 -4.2133 0.5815 41 1 8.5752 -2.9921 -0.2418 42 1 10.3768 -3.3434 1.4259 43 1 9.3767 -4.5645 2.2488 44 1 12.6831 -6.1621 1.9694 45 1 3.9546 -3.5883 1.9748 46 1 5.6389 -3.8630 2.4812 47 1 3.0179 -3.7002 4.7218 48 1 4.6181 -4.5046 4.5778 49 1 4.7089 -3.6740 6.8395 50 1 3.8008 -2.1910 6.4206 51 1 6.7093 -2.4034 3.9277 52 1 5.8861 -0.8509 4.2388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349209213.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:26 Heat of formation + Delta-G solvation = 75.984750 kcal Electronic energy + Delta-G solvation = -31440.823821 eV Core-core repulsion = 27442.990649 eV Total energy + Delta-G solvation = -3997.833172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.19178 -40.51259 -39.51782 -36.96969 -36.39983 -34.62748 -34.07981 -33.20365 -31.60839 -31.31857 -30.46968 -28.98277 -27.57834 -26.39059 -25.53850 -25.09490 -23.56592 -22.60609 -22.37832 -21.73459 -21.18399 -18.93141 -18.58746 -18.25343 -17.91205 -17.68652 -17.24162 -16.75478 -16.55250 -16.16414 -16.03948 -15.80676 -15.69650 -15.24119 -14.97843 -14.50518 -14.46603 -14.16359 -13.95075 -13.79728 -13.59493 -13.49482 -13.28075 -13.05391 -12.88480 -12.75953 -12.72346 -12.58586 -12.48576 -12.44802 -12.39114 -11.98861 -11.85565 -11.83449 -11.60299 -11.49714 -11.40159 -11.22996 -11.22300 -11.10735 -10.62582 -10.54529 -10.51283 -9.41952 -8.18782 -6.28902 0.65329 0.98295 1.39660 1.41301 1.53423 1.69522 1.81038 1.87103 2.41773 2.66845 2.84277 3.14835 3.22287 3.26083 3.33332 3.52053 3.60578 3.68920 3.82516 3.91796 4.02465 4.08227 4.15970 4.19246 4.27366 4.30352 4.32582 4.37077 4.43635 4.47237 4.56864 4.66376 4.70658 4.76810 4.79678 4.84061 4.87019 4.88117 4.93066 5.03556 5.06097 5.07611 5.13936 5.16911 5.19632 5.45453 5.50805 5.53265 5.74244 5.86420 5.97165 6.07995 6.26255 6.63654 6.87238 7.39970 7.67462 8.92848 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010170 B = 0.002951 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2752.401400 B = 9486.658332 C =11094.504199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.222 4.222 3 C 0.211 3.789 4 H 0.070 0.930 5 C -0.140 4.140 6 N -0.444 5.444 7 C 0.020 3.980 8 C 0.358 3.642 9 N -0.346 5.346 10 N -0.321 5.321 11 C 0.200 3.800 12 C -0.028 4.028 13 C -0.083 4.083 14 C 0.028 3.972 15 C -0.541 4.541 16 H 0.055 0.945 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.959 3.041 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.276 1.276 23 N -0.467 5.467 24 C 0.111 3.889 25 C -0.124 4.124 26 H 0.097 0.903 27 C -0.136 4.136 28 C 0.042 3.958 29 O -0.408 6.408 30 C 0.048 3.952 31 H 0.255 0.745 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.044 0.956 42 H -0.005 1.005 43 H 0.004 0.996 44 H 0.264 0.736 45 H 0.126 0.874 46 H 0.107 0.893 47 H 0.116 0.884 48 H 0.091 0.909 49 H 0.099 0.901 50 H 0.070 0.930 51 H 0.068 0.932 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.212 6.266 4.276 29.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.223 4.223 3 C 0.105 3.895 4 H 0.088 0.912 5 C -0.197 4.197 6 N -0.169 5.169 7 C -0.126 4.126 8 C 0.001 3.999 9 N -0.191 5.191 10 N -0.159 5.159 11 C -0.069 4.069 12 C -0.068 4.068 13 C -0.122 4.122 14 C -0.010 4.010 15 C -0.579 4.579 16 H 0.073 0.927 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.784 3.216 20 H -0.189 1.189 21 H -0.206 1.206 22 H -0.201 1.201 23 N -0.161 5.161 24 C -0.011 4.011 25 C -0.143 4.143 26 H 0.115 0.885 27 C -0.174 4.174 28 C -0.034 4.034 29 O -0.328 6.328 30 C -0.028 4.028 31 H 0.271 0.729 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.014 0.986 43 H 0.023 0.977 44 H 0.072 0.928 45 H 0.144 0.856 46 H 0.125 0.875 47 H 0.135 0.865 48 H 0.109 0.891 49 H 0.117 0.883 50 H 0.088 0.912 51 H 0.086 0.914 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -27.624 7.337 4.036 28.865 hybrid contribution 0.555 -1.386 -0.522 1.582 sum -27.069 5.951 3.514 27.937 Atomic orbital electron populations 1.25720 0.96346 0.96626 0.98117 1.22435 0.93502 1.03547 1.02807 1.18262 0.85474 0.88682 0.97103 0.91242 1.21823 1.01757 0.95693 1.00456 1.58900 0.98139 1.05625 1.54243 1.22707 1.02659 0.89738 0.97489 1.22492 0.90990 0.92861 0.93581 1.74498 0.96332 1.25819 1.22406 1.73952 1.12989 1.13877 1.15086 1.24913 0.86399 0.96685 0.98854 1.20262 0.89503 0.98101 0.98891 1.21343 0.97754 0.95665 0.97453 1.18980 0.92256 0.94297 0.95422 1.21658 1.10578 1.19876 1.05766 0.92679 1.25890 0.96937 0.99654 0.97028 1.70082 1.19282 1.42491 1.25118 0.85483 0.78178 0.78790 0.79109 1.18926 1.20606 1.20104 1.46279 1.05443 1.29964 1.34376 1.22276 1.03566 0.88003 0.87214 1.22998 0.97622 0.99803 0.93904 0.88479 1.23284 1.04315 0.97826 0.91955 1.23625 0.85501 0.96220 0.98066 1.88420 1.40643 1.79199 1.24545 1.23345 0.98406 0.99439 0.81656 0.72885 0.90202 0.91933 0.92209 0.94485 0.89752 0.87366 0.88969 0.88573 0.92770 0.93753 0.98646 0.97732 0.92757 0.85627 0.87487 0.86536 0.89065 0.88270 0.91160 0.91393 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 19.25 74.32 1.43 -0.26 16 2 C -0.22 -3.68 11.22 31.13 0.35 -3.33 16 3 C 0.21 4.33 2.18 43.11 0.09 4.43 16 4 H 0.07 1.62 7.98 -2.39 -0.02 1.60 16 5 C -0.14 -2.97 8.96 71.98 0.65 -2.33 16 6 N -0.44 -9.08 4.65 -717.00 -3.33 -12.41 16 7 C 0.02 0.32 9.03 127.69 1.15 1.47 16 8 C 0.36 9.56 6.29 260.11 1.64 11.20 16 9 N -0.35 -11.63 9.58 -58.00 -0.56 -12.18 16 10 N -0.32 -11.93 12.18 -49.54 -0.60 -12.54 16 11 C 0.20 6.46 7.07 137.64 0.97 7.44 16 12 C -0.03 -0.94 5.27 29.85 0.16 -0.78 16 13 C -0.08 -3.37 5.14 30.59 0.16 -3.21 16 14 C 0.03 1.41 4.97 29.85 0.15 1.56 16 15 C -0.54 -30.46 9.11 25.60 0.23 -30.22 16 16 H 0.05 3.03 7.74 -2.91 -0.02 3.00 16 17 C 0.00 0.17 5.46 84.65 0.46 0.63 16 18 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 19 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 N -0.47 -11.91 2.64 -514.85 -1.36 -13.27 16 24 C 0.11 1.98 5.15 86.38 0.44 2.42 16 25 C -0.12 -2.06 3.26 -9.53 -0.03 -2.09 16 26 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 27 C -0.14 -1.59 6.62 32.05 0.21 -1.38 16 28 C 0.04 0.65 7.78 72.65 0.57 1.22 16 29 O -0.41 -10.21 11.36 -148.98 -1.69 -11.90 16 30 C 0.05 1.12 7.00 72.45 0.51 1.63 16 31 H 0.25 0.68 7.80 -4.42 -0.03 0.64 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.06 1.60 5.93 -2.38 -0.01 1.59 16 35 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.08 1.13 5.63 -2.39 -0.01 1.11 16 37 H 0.11 1.27 7.16 -2.39 -0.02 1.25 16 38 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 39 H 0.10 2.87 4.71 -2.39 -0.01 2.86 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 43 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 45 H 0.13 1.58 5.77 -2.39 -0.01 1.56 16 46 H 0.11 1.98 7.34 -2.39 -0.02 1.96 16 47 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.09 1.04 8.04 -2.39 -0.02 1.02 16 49 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.07 1.75 4.69 -2.39 -0.01 1.74 16 52 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -73.94 415.23 4.81 -69.13 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.90 Total: 14.18 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 9.14 Total: -11.62 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -5.56 Total: -105.92 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -1.69 Total: -11.90 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -73.94 4.81 -69.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349209213.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.116 kcal (2) G-P(sol) polarization free energy of solvation -73.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds