Wall clock time and date at job start Wed Apr 1 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47174 * 2 1 4 4 C 1.52995 * 109.47341 * 120.00107 * 2 1 3 5 5 N 1.46498 * 109.47411 * 65.34094 * 4 2 1 6 6 C 1.34772 * 120.00127 * 184.98127 * 5 4 2 7 7 O 1.21585 * 120.00301 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99766 * 179.97438 * 6 5 4 9 9 C 1.39250 * 119.99859 * 174.59837 * 8 6 5 10 10 C 1.39475 * 119.83179 * 215.52202 * 9 8 6 11 11 C 1.36381 * 120.16846 * 179.75961 * 10 9 8 12 12 C 1.40866 * 119.82330 * 0.53544 * 11 10 9 13 13 C 1.41159 * 120.16060 * 179.69414 * 12 11 10 14 14 H 1.08000 * 119.99542 * 212.56647 * 13 12 11 15 15 C 1.39888 * 120.00113 * 32.57471 * 13 12 11 16 16 N 1.30886 * 119.99836 * 6.96571 * 15 13 12 17 17 Si 1.86800 * 120.00258 * 186.96821 * 15 13 12 18 18 H 1.48492 * 109.47154 * 59.99583 * 17 15 13 19 19 H 1.48501 * 109.47273 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46893 * 299.99604 * 17 15 13 21 21 C 1.40873 * 119.67696 * 359.71989 * 12 11 10 22 22 C 1.36374 * 119.82206 * 359.97438 * 21 12 11 23 23 N 1.46898 * 109.47325 * 240.00068 * 2 1 3 24 24 C 1.46963 * 111.00008 * 63.92453 * 23 2 1 25 25 C 1.53049 * 109.36466 * 183.19036 * 24 23 2 26 26 N 1.46965 * 109.36375 * 301.59989 * 25 24 23 27 27 C 1.46902 * 110.99562 * 183.18881 * 26 25 24 28 28 C 1.46956 * 110.87821 * 59.32355 * 26 25 24 29 29 C 1.46954 * 111.00434 * 187.72682 * 23 2 1 30 30 H 1.09000 * 109.47174 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47243 * 300.00329 * 1 2 3 32 32 H 1.08998 * 109.47074 * 59.99915 * 1 2 3 33 33 H 1.09002 * 109.47142 * 185.34594 * 4 2 1 34 34 H 1.09003 * 109.47384 * 305.34255 * 4 2 1 35 35 H 0.96999 * 119.99617 * 4.98488 * 5 4 2 36 36 H 0.96993 * 120.00177 * 354.60531 * 8 6 5 37 37 H 1.08008 * 119.91896 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.08657 * 180.25356 * 11 10 9 39 39 H 0.97005 * 119.99635 * 180.02562 * 16 15 13 40 40 H 1.07998 * 120.08678 * 179.97438 * 21 12 11 41 41 H 1.08007 * 119.90922 * 180.02562 * 22 21 12 42 42 H 1.08997 * 109.48693 * 63.22329 * 24 23 2 43 43 H 1.08995 * 109.50726 * 303.16934 * 24 23 2 44 44 H 1.09001 * 109.48872 * 181.63149 * 25 24 23 45 45 H 1.08995 * 109.50594 * 61.57715 * 25 24 23 46 46 H 1.08996 * 109.47427 * 60.00343 * 27 26 25 47 47 H 1.08996 * 109.47256 * 299.99733 * 27 26 25 48 48 H 1.09004 * 109.46547 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.49142 * 60.64570 * 28 26 25 50 50 H 1.09001 * 109.48742 * 180.71126 * 28 26 25 51 51 H 1.09002 * 109.48593 * 296.78097 * 29 23 2 52 52 H 1.09001 * 109.48892 * 56.84184 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6595 -2.1346 1.1867 6 6 1.9156 -2.9482 2.2301 7 8 2.4620 -2.5091 3.2236 8 7 1.5651 -4.2483 2.1728 9 6 1.9289 -5.1136 3.2014 10 6 2.2658 -6.4352 2.9098 11 6 2.6279 -7.2872 3.9113 12 6 2.6502 -6.8322 5.2442 13 6 3.0177 -7.7097 6.2871 14 1 2.5720 -7.6028 7.2650 15 6 3.9593 -8.7176 6.0540 16 7 4.5998 -8.7638 4.9134 17 14 4.3025 -9.9978 7.3703 18 1 3.0529 -10.7385 7.6783 19 1 5.3336 -10.9476 6.8803 20 1 4.7946 -9.3245 8.5992 21 6 2.3035 -5.4974 5.5315 22 6 1.9496 -4.6556 4.5186 23 7 2.0197 -0.6925 -1.1994 24 6 1.6267 0.0260 -2.4197 25 6 2.0857 -0.7670 -3.6456 26 7 3.5431 -0.9484 -3.5909 27 6 4.0327 -1.6409 -4.7904 28 6 3.9360 -1.6669 -2.3707 29 6 3.4769 -0.8739 -1.1448 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.1258 -0.6390 1.2983 34 1 1.6007 -0.2657 2.1367 35 1 1.2233 -2.4848 0.3942 36 1 1.0594 -4.5813 1.4150 37 1 2.2432 -6.7840 1.8878 38 1 2.8925 -8.3092 3.6835 39 1 5.2524 -9.4629 4.7517 40 1 2.3179 -5.1417 6.5511 41 1 1.6839 -3.6318 4.7372 42 1 2.0934 1.0109 -2.4280 43 1 0.5426 0.1371 -2.4435 44 1 1.8208 -0.2217 -4.5515 45 1 1.5979 -1.7417 -3.6521 46 1 3.7866 -1.0535 -5.6750 47 1 3.5610 -2.6209 -4.8622 48 1 5.1139 -1.7625 -4.7238 49 1 3.4692 -2.6518 -2.3624 50 1 5.0201 -1.7777 -2.3471 51 1 3.9647 0.1008 -1.1386 52 1 3.7418 -1.4192 -0.2389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475839211.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:57 Heat of formation + Delta-G solvation = 14.054738 kcal Electronic energy + Delta-G solvation = -30441.052815 eV Core-core repulsion = 26440.534157 eV Total energy + Delta-G solvation = -4000.518659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.24126 -39.47739 -37.55547 -36.73481 -34.39725 -33.91237 -32.82020 -31.64732 -31.12199 -29.49870 -28.75808 -27.78947 -26.71950 -24.68024 -24.00080 -23.49119 -21.73220 -20.94654 -20.70237 -20.06168 -19.76941 -17.93078 -17.19535 -17.02662 -16.41415 -15.54687 -15.43679 -15.23436 -15.14438 -15.03565 -14.92737 -14.60663 -14.26741 -13.88046 -13.80038 -13.72593 -13.19532 -12.87272 -12.63637 -12.59992 -12.53420 -12.20542 -12.04452 -11.97539 -11.74391 -11.70076 -11.56906 -11.47687 -11.28558 -11.05864 -10.97798 -10.93914 -10.75141 -10.67709 -10.01527 -9.44221 -9.39571 -9.16243 -8.83750 -8.79492 -8.72565 -8.59839 -7.46546 -6.79441 -6.59490 -4.24723 2.75122 3.10866 3.11871 3.15406 3.15467 3.23729 3.52760 3.59132 3.81198 4.02067 4.42429 4.51259 4.67870 4.70053 4.75980 4.82573 4.87623 5.00017 5.03308 5.08337 5.13541 5.20399 5.26571 5.42235 5.46174 5.52125 5.54666 5.55366 5.61071 5.67140 5.72890 5.73919 5.83899 5.97190 6.26086 6.50715 6.56043 6.60223 6.70337 6.79191 6.83710 6.85236 6.95574 7.12640 7.23782 7.35986 7.48188 7.71191 7.96187 8.04930 8.14498 8.37982 8.60184 8.69276 8.98426 9.00982 9.21587 10.34560 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.002076 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.220438 B =13483.252922 C =14601.712216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 H 0.057 0.943 4 C 0.147 3.853 5 N -0.741 5.741 6 C 0.694 3.306 7 O -0.583 6.583 8 N -0.668 5.668 9 C 0.023 3.977 10 C -0.121 4.121 11 C -0.141 4.141 12 C 0.102 3.898 13 C -0.464 4.464 14 H 0.075 0.925 15 C 0.071 3.929 16 N -0.810 5.810 17 Si 0.912 3.088 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.208 4.208 22 C -0.084 4.084 23 N -0.534 5.534 24 C 0.056 3.944 25 C 0.057 3.943 26 N -0.546 5.546 27 C 0.025 3.975 28 C 0.057 3.943 29 C 0.052 3.948 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.399 0.601 36 H 0.391 0.609 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.278 0.722 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.067 0.933 47 H 0.026 0.974 48 H 0.068 0.932 49 H 0.044 0.956 50 H 0.079 0.921 51 H 0.042 0.958 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.554 14.970 -18.759 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.039 4.039 3 H 0.074 0.926 4 C 0.021 3.979 5 N -0.399 5.399 6 C 0.394 3.606 7 O -0.460 6.460 8 N -0.314 5.314 9 C -0.069 4.069 10 C -0.142 4.142 11 C -0.161 4.161 12 C 0.100 3.900 13 C -0.494 4.494 14 H 0.093 0.907 15 C -0.144 4.144 16 N -0.437 5.437 17 Si 0.737 3.263 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.192 1.192 21 C -0.228 4.228 22 C -0.104 4.104 23 N -0.260 5.260 24 C -0.072 4.072 25 C -0.071 4.071 26 N -0.271 5.271 27 C -0.123 4.123 28 C -0.071 4.071 29 C -0.076 4.076 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.234 0.766 36 H 0.223 0.777 37 H 0.107 0.893 38 H 0.139 0.861 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.060 0.940 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.086 0.914 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.062 0.938 50 H 0.097 0.903 51 H 0.060 0.940 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.839 15.265 -17.971 24.071 hybrid contribution -0.005 -0.905 -0.345 0.969 sum -4.844 14.360 -18.317 23.773 Atomic orbital electron populations 1.21851 0.93586 1.02911 1.01799 1.21937 0.96415 0.96004 0.89585 0.92563 1.21158 0.99660 0.80725 0.96339 1.44951 1.66947 1.09266 1.18720 1.16055 0.79695 0.81406 0.83426 1.90902 1.48451 1.74986 1.31673 1.42087 1.57875 1.07052 1.24395 1.17025 1.13549 0.89909 0.86459 1.20243 1.03042 0.93054 0.97848 1.20911 1.03240 0.99401 0.92584 1.17672 0.88598 0.90765 0.92973 1.19450 1.20767 1.11442 0.97774 0.90675 1.25857 0.94799 0.97492 0.96251 1.69800 1.19889 1.30555 1.23409 0.86319 0.78685 0.80095 0.81233 1.19040 1.20495 1.19155 1.20768 1.10911 0.93881 0.97224 1.20436 1.00096 0.98741 0.91095 1.62154 1.12764 1.49462 1.01597 1.22196 1.00525 0.95523 0.89006 1.22158 0.87519 0.99628 0.97820 1.62187 1.12566 1.49794 1.02584 1.22341 1.00724 0.96673 0.92585 1.22171 1.00445 0.95664 0.88808 1.22266 0.87080 0.99726 0.98515 0.91567 0.91802 0.92492 0.92035 0.91021 0.76600 0.77656 0.89266 0.86091 0.91124 0.88723 0.87335 0.94032 0.89917 0.90492 0.93903 0.91447 0.95492 0.91323 0.93758 0.90258 0.93992 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.95 37.16 0.33 -0.70 16 2 C 0.07 0.56 2.34 -67.72 -0.16 0.41 16 3 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 4 C 0.15 1.63 4.53 -4.05 -0.02 1.61 16 5 N -0.74 -9.39 4.92 -65.23 -0.32 -9.71 16 6 C 0.69 12.46 8.40 -86.92 -0.73 11.73 16 7 O -0.58 -13.07 13.75 5.29 0.07 -13.00 16 8 N -0.67 -12.06 5.31 -14.10 -0.07 -12.13 16 9 C 0.02 0.53 6.30 -83.57 -0.53 0.00 16 10 C -0.12 -2.82 9.90 -39.79 -0.39 -3.21 16 11 C -0.14 -3.70 8.58 -39.26 -0.34 -4.03 16 12 C 0.10 2.80 5.52 -106.80 -0.59 2.22 16 13 C -0.46 -12.60 9.03 -37.86 -0.34 -12.94 16 14 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 15 C 0.07 1.84 5.29 -17.34 -0.09 1.75 16 16 N -0.81 -21.51 10.90 55.54 0.61 -20.91 16 17 Si 0.91 19.25 29.57 -169.99 -5.03 14.23 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 C -0.21 -5.41 9.74 -39.26 -0.38 -5.79 16 22 C -0.08 -2.06 8.62 -39.79 -0.34 -2.40 16 23 N -0.53 -4.42 3.93 -226.50 -0.89 -5.32 16 24 C 0.06 0.40 5.39 -3.76 -0.02 0.38 16 25 C 0.06 0.42 5.62 -3.76 -0.02 0.40 16 26 N -0.55 -4.62 4.97 -242.75 -1.21 -5.82 16 27 C 0.03 0.18 9.60 60.07 0.58 0.75 16 28 C 0.06 0.52 5.62 -3.77 -0.02 0.50 16 29 C 0.05 0.49 5.12 -3.77 -0.02 0.47 16 30 H 0.07 0.52 7.32 -51.93 -0.38 0.14 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 33 H 0.06 0.75 6.58 -51.93 -0.34 0.41 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.40 4.30 7.44 -40.82 -0.30 4.00 16 36 H 0.39 5.61 8.83 -40.82 -0.36 5.25 16 37 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.12 3.24 6.37 -52.49 -0.33 2.91 16 39 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 40 H 0.09 2.35 8.06 -52.49 -0.42 1.92 16 41 H 0.11 2.67 6.22 -52.48 -0.33 2.35 16 42 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.51 6.26 -51.93 -0.33 0.18 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 49 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.70 8.13 -51.93 -0.42 0.27 16 51 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.09 0.98 6.00 -51.93 -0.31 0.67 16 LS Contribution 404.61 15.07 6.10 6.10 Total: -1.00 -31.13 404.61 -12.31 -43.44 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -8.48 Total: 11.99 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -3.09 Total: -8.86 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -1.89 Total: -53.89 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.07 Total: -13.00 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.13 -12.31 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475839211.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.491 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds