Wall clock time and date at job start Wed Apr 1 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47174 * 2 1 4 4 C 1.52995 * 109.47341 * 120.00107 * 2 1 3 5 5 N 1.46498 * 109.47411 * 65.34094 * 4 2 1 6 6 C 1.34772 * 120.00127 * 184.98127 * 5 4 2 7 7 O 1.21585 * 120.00301 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99766 * 179.97438 * 6 5 4 9 9 C 1.39250 * 119.99859 * 174.59837 * 8 6 5 10 10 C 1.39475 * 119.83179 * 215.52202 * 9 8 6 11 11 C 1.36381 * 120.16846 * 179.75961 * 10 9 8 12 12 C 1.40866 * 119.82330 * 0.53544 * 11 10 9 13 13 C 1.41159 * 120.16060 * 179.69414 * 12 11 10 14 14 H 1.08000 * 119.99542 * 212.56647 * 13 12 11 15 15 C 1.39888 * 120.00113 * 32.57471 * 13 12 11 16 16 N 1.30886 * 119.99836 * 6.96571 * 15 13 12 17 17 Si 1.86800 * 120.00258 * 186.96821 * 15 13 12 18 18 H 1.48492 * 109.47154 * 59.99583 * 17 15 13 19 19 H 1.48501 * 109.47273 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46893 * 299.99604 * 17 15 13 21 21 C 1.40873 * 119.67696 * 359.71989 * 12 11 10 22 22 C 1.36374 * 119.82206 * 359.97438 * 21 12 11 23 23 N 1.46898 * 109.47325 * 240.00068 * 2 1 3 24 24 C 1.46963 * 111.00008 * 63.92453 * 23 2 1 25 25 C 1.53049 * 109.36466 * 183.19036 * 24 23 2 26 26 N 1.46965 * 109.36375 * 301.59989 * 25 24 23 27 27 C 1.46902 * 110.99562 * 183.18881 * 26 25 24 28 28 C 1.46956 * 110.87821 * 59.32355 * 26 25 24 29 29 C 1.46954 * 111.00434 * 187.72682 * 23 2 1 30 30 H 1.09000 * 109.47174 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47243 * 300.00329 * 1 2 3 32 32 H 1.08998 * 109.47074 * 59.99915 * 1 2 3 33 33 H 1.09002 * 109.47142 * 185.34594 * 4 2 1 34 34 H 1.09003 * 109.47384 * 305.34255 * 4 2 1 35 35 H 0.96999 * 119.99617 * 4.98488 * 5 4 2 36 36 H 0.96993 * 120.00177 * 354.60531 * 8 6 5 37 37 H 1.08008 * 119.91896 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.08657 * 180.25356 * 11 10 9 39 39 H 0.97005 * 119.99635 * 180.02562 * 16 15 13 40 40 H 1.07998 * 120.08678 * 179.97438 * 21 12 11 41 41 H 1.08007 * 119.90922 * 180.02562 * 22 21 12 42 42 H 1.08997 * 109.48693 * 63.22329 * 24 23 2 43 43 H 1.08995 * 109.50726 * 303.16934 * 24 23 2 44 44 H 1.09001 * 109.48872 * 181.63149 * 25 24 23 45 45 H 1.08995 * 109.50594 * 61.57715 * 25 24 23 46 46 H 1.08996 * 109.47427 * 60.00343 * 27 26 25 47 47 H 1.08996 * 109.47256 * 299.99733 * 27 26 25 48 48 H 1.09004 * 109.46547 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.49142 * 60.64570 * 28 26 25 50 50 H 1.09001 * 109.48742 * 180.71126 * 28 26 25 51 51 H 1.09002 * 109.48593 * 296.78097 * 29 23 2 52 52 H 1.09001 * 109.48892 * 56.84184 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6595 -2.1346 1.1867 6 6 1.9156 -2.9482 2.2301 7 8 2.4620 -2.5091 3.2236 8 7 1.5651 -4.2483 2.1728 9 6 1.9289 -5.1136 3.2014 10 6 2.2658 -6.4352 2.9098 11 6 2.6279 -7.2872 3.9113 12 6 2.6502 -6.8322 5.2442 13 6 3.0177 -7.7097 6.2871 14 1 2.5720 -7.6028 7.2650 15 6 3.9593 -8.7176 6.0540 16 7 4.5998 -8.7638 4.9134 17 14 4.3025 -9.9978 7.3703 18 1 3.0529 -10.7385 7.6783 19 1 5.3336 -10.9476 6.8803 20 1 4.7946 -9.3245 8.5992 21 6 2.3035 -5.4974 5.5315 22 6 1.9496 -4.6556 4.5186 23 7 2.0197 -0.6925 -1.1994 24 6 1.6267 0.0260 -2.4197 25 6 2.0857 -0.7670 -3.6456 26 7 3.5431 -0.9484 -3.5909 27 6 4.0327 -1.6409 -4.7904 28 6 3.9360 -1.6669 -2.3707 29 6 3.4769 -0.8739 -1.1448 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 3.1258 -0.6390 1.2983 34 1 1.6007 -0.2657 2.1367 35 1 1.2233 -2.4848 0.3942 36 1 1.0594 -4.5813 1.4150 37 1 2.2432 -6.7840 1.8878 38 1 2.8925 -8.3092 3.6835 39 1 5.2524 -9.4629 4.7517 40 1 2.3179 -5.1417 6.5511 41 1 1.6839 -3.6318 4.7372 42 1 2.0934 1.0109 -2.4280 43 1 0.5426 0.1371 -2.4435 44 1 1.8208 -0.2217 -4.5515 45 1 1.5979 -1.7417 -3.6521 46 1 3.7866 -1.0535 -5.6750 47 1 3.5610 -2.6209 -4.8622 48 1 5.1139 -1.7625 -4.7238 49 1 3.4692 -2.6518 -2.3624 50 1 5.0201 -1.7777 -2.3471 51 1 3.9647 0.1008 -1.1386 52 1 3.7418 -1.4192 -0.2389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475839211.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:56 Heat of formation + Delta-G solvation = -7.287337 kcal Electronic energy + Delta-G solvation = -30441.978277 eV Core-core repulsion = 26440.534157 eV Total energy + Delta-G solvation = -4001.444121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.46585 -40.50277 -39.20837 -37.70055 -36.10691 -35.11551 -34.55922 -32.41113 -31.92120 -31.43162 -30.56755 -28.39739 -27.80048 -26.39574 -24.66468 -24.19578 -23.43756 -22.69990 -21.67200 -21.52473 -20.55151 -19.45054 -19.07505 -18.21686 -17.58659 -17.03747 -16.59665 -16.18945 -16.12688 -15.91421 -15.74318 -15.69694 -15.53203 -15.24312 -14.98429 -14.89201 -14.53540 -14.36058 -13.97104 -13.78266 -13.59130 -13.33980 -13.21779 -13.13985 -12.94785 -12.77656 -12.76641 -12.61884 -12.46551 -12.37761 -12.22455 -12.17627 -11.80265 -11.59593 -11.44674 -11.38111 -11.19024 -10.98479 -10.62865 -9.98085 -9.44952 -9.43567 -9.26510 -8.69628 -8.50975 -6.27327 0.88886 1.16948 1.40379 1.51004 1.52286 1.83561 2.24509 2.28883 2.79488 2.83346 2.97893 3.49063 3.67261 3.73471 3.87100 4.00025 4.08740 4.21833 4.34496 4.36857 4.41561 4.43785 4.50456 4.56810 4.61268 4.67376 4.68586 4.77646 4.83816 4.86766 4.89811 4.94850 4.99961 5.01917 5.04919 5.12008 5.16154 5.18514 5.35001 5.38697 5.47342 5.54740 5.70385 5.85302 5.94520 5.95092 6.07062 6.13552 6.14681 6.16267 6.30357 6.43190 6.69931 6.98420 7.03757 7.23596 7.73356 8.43914 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.002076 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.220438 B =13483.252922 C =14601.712216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 H 0.067 0.933 4 C 0.145 3.855 5 N -0.714 5.714 6 C 0.692 3.308 7 O -0.628 6.628 8 N -0.660 5.660 9 C 0.041 3.959 10 C -0.118 4.118 11 C -0.158 4.158 12 C 0.070 3.930 13 C -0.500 4.500 14 H 0.073 0.927 15 C 0.029 3.971 16 N -0.840 5.840 17 Si 0.986 3.014 18 H -0.258 1.258 19 H -0.268 1.268 20 H -0.264 1.264 21 C -0.224 4.224 22 C -0.095 4.095 23 N -0.536 5.536 24 C 0.058 3.942 25 C 0.057 3.943 26 N -0.555 5.555 27 C 0.025 3.975 28 C 0.060 3.940 29 C 0.058 3.942 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.413 0.587 36 H 0.412 0.588 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.285 0.715 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.039 0.961 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.037 0.963 46 H 0.079 0.921 47 H 0.024 0.976 48 H 0.068 0.932 49 H 0.034 0.966 50 H 0.077 0.923 51 H 0.038 0.962 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.400 15.560 -20.760 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 H 0.085 0.915 4 C 0.020 3.980 5 N -0.371 5.371 6 C 0.393 3.607 7 O -0.509 6.509 8 N -0.308 5.308 9 C -0.053 4.053 10 C -0.139 4.139 11 C -0.178 4.178 12 C 0.068 3.932 13 C -0.531 4.531 14 H 0.091 0.909 15 C -0.183 4.183 16 N -0.468 5.468 17 Si 0.807 3.193 18 H -0.183 1.183 19 H -0.192 1.192 20 H -0.189 1.189 21 C -0.244 4.244 22 C -0.115 4.115 23 N -0.262 5.262 24 C -0.070 4.070 25 C -0.071 4.071 26 N -0.280 5.280 27 C -0.123 4.123 28 C -0.068 4.068 29 C -0.071 4.071 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.250 0.750 36 H 0.249 0.751 37 H 0.141 0.859 38 H 0.128 0.872 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.125 0.875 42 H 0.057 0.943 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.055 0.945 46 H 0.098 0.902 47 H 0.043 0.957 48 H 0.087 0.913 49 H 0.052 0.948 50 H 0.096 0.904 51 H 0.057 0.943 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.728 15.889 -20.058 26.222 hybrid contribution 0.227 -0.919 0.126 0.955 sum -5.501 14.971 -19.931 25.527 Atomic orbital electron populations 1.21828 0.92284 1.02842 1.02789 1.21854 0.97218 0.95811 0.88014 0.91519 1.21283 0.99110 0.79653 0.97916 1.44733 1.65447 1.09370 1.17565 1.16213 0.79287 0.81436 0.83785 1.90881 1.50437 1.75763 1.33801 1.41864 1.58142 1.06758 1.24035 1.17038 1.11072 0.90319 0.86870 1.20480 1.01710 0.92814 0.98855 1.20910 1.04417 0.99479 0.92967 1.17992 0.89814 0.91441 0.93961 1.19691 1.22333 1.13180 0.97895 0.90932 1.26719 0.93892 0.99036 0.98654 1.69861 1.20335 1.31418 1.25173 0.85194 0.78882 0.77196 0.78013 1.18259 1.19247 1.18907 1.20888 1.11704 0.94006 0.97776 1.20531 1.00572 0.98442 0.91951 1.62171 1.11945 1.49901 1.02154 1.22247 1.01483 0.95078 0.88154 1.22213 0.86754 0.99554 0.98572 1.62218 1.13391 1.49799 1.02625 1.22372 1.00741 0.96691 0.92458 1.22096 1.00309 0.95130 0.89261 1.22132 0.87878 0.99244 0.97821 0.92114 0.91648 0.90747 0.93193 0.91699 0.74986 0.75127 0.85901 0.87248 0.90432 0.88810 0.87495 0.94272 0.88216 0.88984 0.94484 0.90213 0.95703 0.91282 0.94814 0.90412 0.94349 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.95 71.98 0.64 -0.96 16 2 C 0.08 1.13 2.34 44.91 0.11 1.23 16 3 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 4 C 0.15 3.08 4.53 86.38 0.39 3.47 16 5 N -0.71 -17.06 4.92 -478.55 -2.35 -19.41 16 6 C 0.69 24.24 8.40 179.05 1.50 25.74 16 7 O -0.63 -28.29 13.75 -3.98 -0.05 -28.34 16 8 N -0.66 -22.81 5.31 -316.78 -1.68 -24.49 16 9 C 0.04 1.85 6.30 38.56 0.24 2.10 16 10 C -0.12 -5.42 9.90 22.13 0.22 -5.20 16 11 C -0.16 -8.40 8.58 22.48 0.19 -8.20 16 12 C 0.07 3.98 5.52 -21.27 -0.12 3.86 16 13 C -0.50 -28.11 9.03 23.39 0.21 -27.90 16 14 H 0.07 3.94 7.85 -2.91 -0.02 3.91 16 15 C 0.03 1.53 5.29 85.23 0.45 1.98 16 16 N -0.84 -45.38 10.90 21.82 0.24 -45.14 16 17 Si 0.99 39.72 29.57 68.60 2.03 41.75 16 18 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 19 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 C -0.22 -12.06 9.74 22.48 0.22 -11.84 16 22 C -0.09 -4.75 8.62 22.13 0.19 -4.56 16 23 N -0.54 -7.77 3.93 -870.50 -3.42 -11.19 16 24 C 0.06 0.68 5.39 86.31 0.46 1.14 16 25 C 0.06 0.71 5.62 86.31 0.49 1.19 16 26 N -0.56 -8.44 4.97 -921.93 -4.58 -13.02 16 27 C 0.03 0.31 9.60 127.69 1.23 1.54 16 28 C 0.06 1.04 5.62 86.31 0.49 1.53 16 29 C 0.06 1.02 5.12 86.31 0.44 1.46 16 30 H 0.06 0.78 7.32 -2.39 -0.02 0.76 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.62 6.43 -2.39 -0.02 0.61 16 33 H 0.05 1.21 6.58 -2.39 -0.02 1.20 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.41 7.92 7.44 -92.71 -0.69 7.23 16 36 H 0.41 10.75 8.83 -92.71 -0.82 9.93 16 37 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16 38 H 0.11 6.01 6.37 -2.91 -0.02 6.00 16 39 H 0.29 13.99 8.30 -92.70 -0.77 13.22 16 40 H 0.09 4.88 8.06 -2.91 -0.02 4.86 16 41 H 0.11 5.37 6.22 -2.91 -0.02 5.36 16 42 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.10 0.85 6.26 -2.39 -0.01 0.84 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.07 0.84 8.13 -2.38 -0.02 0.82 16 49 H 0.03 0.64 8.14 -2.39 -0.02 0.63 16 50 H 0.08 1.33 8.13 -2.39 -0.02 1.31 16 51 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.07 1.53 6.00 -2.39 -0.01 1.52 16 Total: -1.00 -69.20 404.61 -3.05 -72.24 By element: Atomic # 1 Polarization: 41.59 SS G_CDS: -0.57 Total: 41.02 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 7.36 Total: -13.40 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -11.80 Total: -113.26 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.05 Total: -28.34 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -69.20 -3.05 -72.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475839211.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.953 kcal (2) G-P(sol) polarization free energy of solvation -69.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds