Wall clock time and date at job start Wed Apr 1 2020 05:58:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09000 * 109.47174 * 2 1
4 4 C 1.52995 * 109.47341 * 120.00107 * 2 1 3
5 5 N 1.46498 * 109.47411 * 65.34094 * 4 2 1
6 6 C 1.34772 * 120.00127 * 184.98127 * 5 4 2
7 7 O 1.21585 * 120.00301 * 0.02562 * 6 5 4
8 8 N 1.34783 * 119.99766 * 179.97438 * 6 5 4
9 9 C 1.39250 * 119.99859 * 174.59837 * 8 6 5
10 10 C 1.39475 * 119.83179 * 215.52202 * 9 8 6
11 11 C 1.36381 * 120.16846 * 179.75961 * 10 9 8
12 12 C 1.40866 * 119.82330 * 0.53544 * 11 10 9
13 13 C 1.41159 * 120.16060 * 179.69414 * 12 11 10
14 14 H 1.08000 * 119.99542 * 212.56647 * 13 12 11
15 15 C 1.39888 * 120.00113 * 32.57471 * 13 12 11
16 16 N 1.30886 * 119.99836 * 6.96571 * 15 13 12
17 17 Si 1.86800 * 120.00258 * 186.96821 * 15 13 12
18 18 H 1.48492 * 109.47154 * 59.99583 * 17 15 13
19 19 H 1.48501 * 109.47273 * 180.02562 * 17 15 13
20 20 H 1.48506 * 109.46893 * 299.99604 * 17 15 13
21 21 C 1.40873 * 119.67696 * 359.71989 * 12 11 10
22 22 C 1.36374 * 119.82206 * 359.97438 * 21 12 11
23 23 N 1.46898 * 109.47325 * 240.00068 * 2 1 3
24 24 C 1.46963 * 111.00008 * 63.92453 * 23 2 1
25 25 C 1.53049 * 109.36466 * 183.19036 * 24 23 2
26 26 N 1.46965 * 109.36375 * 301.59989 * 25 24 23
27 27 C 1.46902 * 110.99562 * 183.18881 * 26 25 24
28 28 C 1.46956 * 110.87821 * 59.32355 * 26 25 24
29 29 C 1.46954 * 111.00434 * 187.72682 * 23 2 1
30 30 H 1.09000 * 109.47174 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.47243 * 300.00329 * 1 2 3
32 32 H 1.08998 * 109.47074 * 59.99915 * 1 2 3
33 33 H 1.09002 * 109.47142 * 185.34594 * 4 2 1
34 34 H 1.09003 * 109.47384 * 305.34255 * 4 2 1
35 35 H 0.96999 * 119.99617 * 4.98488 * 5 4 2
36 36 H 0.96993 * 120.00177 * 354.60531 * 8 6 5
37 37 H 1.08008 * 119.91896 * 359.97438 * 10 9 8
38 38 H 1.07998 * 120.08657 * 180.25356 * 11 10 9
39 39 H 0.97005 * 119.99635 * 180.02562 * 16 15 13
40 40 H 1.07998 * 120.08678 * 179.97438 * 21 12 11
41 41 H 1.08007 * 119.90922 * 180.02562 * 22 21 12
42 42 H 1.08997 * 109.48693 * 63.22329 * 24 23 2
43 43 H 1.08995 * 109.50726 * 303.16934 * 24 23 2
44 44 H 1.09001 * 109.48872 * 181.63149 * 25 24 23
45 45 H 1.08995 * 109.50594 * 61.57715 * 25 24 23
46 46 H 1.08996 * 109.47427 * 60.00343 * 27 26 25
47 47 H 1.08996 * 109.47256 * 299.99733 * 27 26 25
48 48 H 1.09004 * 109.46547 * 180.02562 * 27 26 25
49 49 H 1.08997 * 109.49142 * 60.64570 * 28 26 25
50 50 H 1.09001 * 109.48742 * 180.71126 * 28 26 25
51 51 H 1.09002 * 109.48593 * 296.78097 * 29 23 2
52 52 H 1.09001 * 109.48892 * 56.84184 * 29 23 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2492
5 7 1.6595 -2.1346 1.1867
6 6 1.9156 -2.9482 2.2301
7 8 2.4620 -2.5091 3.2236
8 7 1.5651 -4.2483 2.1728
9 6 1.9289 -5.1136 3.2014
10 6 2.2658 -6.4352 2.9098
11 6 2.6279 -7.2872 3.9113
12 6 2.6502 -6.8322 5.2442
13 6 3.0177 -7.7097 6.2871
14 1 2.5720 -7.6028 7.2650
15 6 3.9593 -8.7176 6.0540
16 7 4.5998 -8.7638 4.9134
17 14 4.3025 -9.9978 7.3703
18 1 3.0529 -10.7385 7.6783
19 1 5.3336 -10.9476 6.8803
20 1 4.7946 -9.3245 8.5992
21 6 2.3035 -5.4974 5.5315
22 6 1.9496 -4.6556 4.5186
23 7 2.0197 -0.6925 -1.1994
24 6 1.6267 0.0260 -2.4197
25 6 2.0857 -0.7670 -3.6456
26 7 3.5431 -0.9484 -3.5909
27 6 4.0327 -1.6409 -4.7904
28 6 3.9360 -1.6669 -2.3707
29 6 3.4769 -0.8739 -1.1448
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5139 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 3.1258 -0.6390 1.2983
34 1 1.6007 -0.2657 2.1367
35 1 1.2233 -2.4848 0.3942
36 1 1.0594 -4.5813 1.4150
37 1 2.2432 -6.7840 1.8878
38 1 2.8925 -8.3092 3.6835
39 1 5.2524 -9.4629 4.7517
40 1 2.3179 -5.1417 6.5511
41 1 1.6839 -3.6318 4.7372
42 1 2.0934 1.0109 -2.4280
43 1 0.5426 0.1371 -2.4435
44 1 1.8208 -0.2217 -4.5515
45 1 1.5979 -1.7417 -3.6521
46 1 3.7866 -1.0535 -5.6750
47 1 3.5610 -2.6209 -4.8622
48 1 5.1139 -1.7625 -4.7238
49 1 3.4692 -2.6518 -2.3624
50 1 5.0201 -1.7777 -2.3471
51 1 3.9647 0.1008 -1.1386
52 1 3.7418 -1.4192 -0.2389
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001475839211.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:58:56
Heat of formation + Delta-G solvation = -7.287337 kcal
Electronic energy + Delta-G solvation = -30441.978277 eV
Core-core repulsion = 26440.534157 eV
Total energy + Delta-G solvation = -4001.444121 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.44 seconds
Orbital eigenvalues (eV)
-41.46585 -40.50277 -39.20837 -37.70055 -36.10691 -35.11551 -34.55922 -32.41113
-31.92120 -31.43162 -30.56755 -28.39739 -27.80048 -26.39574 -24.66468 -24.19578
-23.43756 -22.69990 -21.67200 -21.52473 -20.55151 -19.45054 -19.07505 -18.21686
-17.58659 -17.03747 -16.59665 -16.18945 -16.12688 -15.91421 -15.74318 -15.69694
-15.53203 -15.24312 -14.98429 -14.89201 -14.53540 -14.36058 -13.97104 -13.78266
-13.59130 -13.33980 -13.21779 -13.13985 -12.94785 -12.77656 -12.76641 -12.61884
-12.46551 -12.37761 -12.22455 -12.17627 -11.80265 -11.59593 -11.44674 -11.38111
-11.19024 -10.98479 -10.62865 -9.98085 -9.44952 -9.43567 -9.26510 -8.69628
-8.50975 -6.27327 0.88886 1.16948 1.40379 1.51004 1.52286 1.83561
2.24509 2.28883 2.79488 2.83346 2.97893 3.49063 3.67261 3.73471
3.87100 4.00025 4.08740 4.21833 4.34496 4.36857 4.41561 4.43785
4.50456 4.56810 4.61268 4.67376 4.68586 4.77646 4.83816 4.86766
4.89811 4.94850 4.99961 5.01917 5.04919 5.12008 5.16154 5.18514
5.35001 5.38697 5.47342 5.54740 5.70385 5.85302 5.94520 5.95092
6.07062 6.13552 6.14681 6.16267 6.30357 6.43190 6.69931 6.98420
7.03757 7.23596 7.73356 8.43914
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.017150 B = 0.002076 C = 0.001917
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1632.220438 B =13483.252922 C =14601.712216
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.079 3.921
3 H 0.067 0.933
4 C 0.145 3.855
5 N -0.714 5.714
6 C 0.692 3.308
7 O -0.628 6.628
8 N -0.660 5.660
9 C 0.041 3.959
10 C -0.118 4.118
11 C -0.158 4.158
12 C 0.070 3.930
13 C -0.500 4.500
14 H 0.073 0.927
15 C 0.029 3.971
16 N -0.840 5.840
17 Si 0.986 3.014
18 H -0.258 1.258
19 H -0.268 1.268
20 H -0.264 1.264
21 C -0.224 4.224
22 C -0.095 4.095
23 N -0.536 5.536
24 C 0.058 3.942
25 C 0.057 3.943
26 N -0.555 5.555
27 C 0.025 3.975
28 C 0.060 3.940
29 C 0.058 3.942
30 H 0.060 0.940
31 H 0.065 0.935
32 H 0.074 0.926
33 H 0.050 0.950
34 H 0.065 0.935
35 H 0.413 0.587
36 H 0.412 0.588
37 H 0.123 0.877
38 H 0.110 0.890
39 H 0.285 0.715
40 H 0.094 0.906
41 H 0.107 0.893
42 H 0.039 0.961
43 H 0.100 0.900
44 H 0.092 0.908
45 H 0.037 0.963
46 H 0.079 0.921
47 H 0.024 0.976
48 H 0.068 0.932
49 H 0.034 0.966
50 H 0.077 0.923
51 H 0.038 0.962
52 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.400 15.560 -20.760 26.721
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.029 4.029
3 H 0.085 0.915
4 C 0.020 3.980
5 N -0.371 5.371
6 C 0.393 3.607
7 O -0.509 6.509
8 N -0.308 5.308
9 C -0.053 4.053
10 C -0.139 4.139
11 C -0.178 4.178
12 C 0.068 3.932
13 C -0.531 4.531
14 H 0.091 0.909
15 C -0.183 4.183
16 N -0.468 5.468
17 Si 0.807 3.193
18 H -0.183 1.183
19 H -0.192 1.192
20 H -0.189 1.189
21 C -0.244 4.244
22 C -0.115 4.115
23 N -0.262 5.262
24 C -0.070 4.070
25 C -0.071 4.071
26 N -0.280 5.280
27 C -0.123 4.123
28 C -0.068 4.068
29 C -0.071 4.071
30 H 0.079 0.921
31 H 0.084 0.916
32 H 0.093 0.907
33 H 0.068 0.932
34 H 0.083 0.917
35 H 0.250 0.750
36 H 0.249 0.751
37 H 0.141 0.859
38 H 0.128 0.872
39 H 0.096 0.904
40 H 0.112 0.888
41 H 0.125 0.875
42 H 0.057 0.943
43 H 0.118 0.882
44 H 0.110 0.890
45 H 0.055 0.945
46 H 0.098 0.902
47 H 0.043 0.957
48 H 0.087 0.913
49 H 0.052 0.948
50 H 0.096 0.904
51 H 0.057 0.943
52 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -5.728 15.889 -20.058 26.222
hybrid contribution 0.227 -0.919 0.126 0.955
sum -5.501 14.971 -19.931 25.527
Atomic orbital electron populations
1.21828 0.92284 1.02842 1.02789 1.21854 0.97218 0.95811 0.88014
0.91519 1.21283 0.99110 0.79653 0.97916 1.44733 1.65447 1.09370
1.17565 1.16213 0.79287 0.81436 0.83785 1.90881 1.50437 1.75763
1.33801 1.41864 1.58142 1.06758 1.24035 1.17038 1.11072 0.90319
0.86870 1.20480 1.01710 0.92814 0.98855 1.20910 1.04417 0.99479
0.92967 1.17992 0.89814 0.91441 0.93961 1.19691 1.22333 1.13180
0.97895 0.90932 1.26719 0.93892 0.99036 0.98654 1.69861 1.20335
1.31418 1.25173 0.85194 0.78882 0.77196 0.78013 1.18259 1.19247
1.18907 1.20888 1.11704 0.94006 0.97776 1.20531 1.00572 0.98442
0.91951 1.62171 1.11945 1.49901 1.02154 1.22247 1.01483 0.95078
0.88154 1.22213 0.86754 0.99554 0.98572 1.62218 1.13391 1.49799
1.02625 1.22372 1.00741 0.96691 0.92458 1.22096 1.00309 0.95130
0.89261 1.22132 0.87878 0.99244 0.97821 0.92114 0.91648 0.90747
0.93193 0.91699 0.74986 0.75127 0.85901 0.87248 0.90432 0.88810
0.87495 0.94272 0.88216 0.88984 0.94484 0.90213 0.95703 0.91282
0.94814 0.90412 0.94349 0.91019
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.60 8.95 71.98 0.64 -0.96 16
2 C 0.08 1.13 2.34 44.91 0.11 1.23 16
3 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16
4 C 0.15 3.08 4.53 86.38 0.39 3.47 16
5 N -0.71 -17.06 4.92 -478.55 -2.35 -19.41 16
6 C 0.69 24.24 8.40 179.05 1.50 25.74 16
7 O -0.63 -28.29 13.75 -3.98 -0.05 -28.34 16
8 N -0.66 -22.81 5.31 -316.78 -1.68 -24.49 16
9 C 0.04 1.85 6.30 38.56 0.24 2.10 16
10 C -0.12 -5.42 9.90 22.13 0.22 -5.20 16
11 C -0.16 -8.40 8.58 22.48 0.19 -8.20 16
12 C 0.07 3.98 5.52 -21.27 -0.12 3.86 16
13 C -0.50 -28.11 9.03 23.39 0.21 -27.90 16
14 H 0.07 3.94 7.85 -2.91 -0.02 3.91 16
15 C 0.03 1.53 5.29 85.23 0.45 1.98 16
16 N -0.84 -45.38 10.90 21.82 0.24 -45.14 16
17 Si 0.99 39.72 29.57 68.60 2.03 41.75 16
18 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16
19 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16
20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16
21 C -0.22 -12.06 9.74 22.48 0.22 -11.84 16
22 C -0.09 -4.75 8.62 22.13 0.19 -4.56 16
23 N -0.54 -7.77 3.93 -870.50 -3.42 -11.19 16
24 C 0.06 0.68 5.39 86.31 0.46 1.14 16
25 C 0.06 0.71 5.62 86.31 0.49 1.19 16
26 N -0.56 -8.44 4.97 -921.93 -4.58 -13.02 16
27 C 0.03 0.31 9.60 127.69 1.23 1.54 16
28 C 0.06 1.04 5.62 86.31 0.49 1.53 16
29 C 0.06 1.02 5.12 86.31 0.44 1.46 16
30 H 0.06 0.78 7.32 -2.39 -0.02 0.76 16
31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
32 H 0.07 0.62 6.43 -2.39 -0.02 0.61 16
33 H 0.05 1.21 6.58 -2.39 -0.02 1.20 16
34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16
35 H 0.41 7.92 7.44 -92.71 -0.69 7.23 16
36 H 0.41 10.75 8.83 -92.71 -0.82 9.93 16
37 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16
38 H 0.11 6.01 6.37 -2.91 -0.02 6.00 16
39 H 0.29 13.99 8.30 -92.70 -0.77 13.22 16
40 H 0.09 4.88 8.06 -2.91 -0.02 4.86 16
41 H 0.11 5.37 6.22 -2.91 -0.02 5.36 16
42 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16
43 H 0.10 0.85 6.26 -2.39 -0.01 0.84 16
44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16
45 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16
46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16
47 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16
48 H 0.07 0.84 8.13 -2.38 -0.02 0.82 16
49 H 0.03 0.64 8.14 -2.39 -0.02 0.63 16
50 H 0.08 1.33 8.13 -2.39 -0.02 1.31 16
51 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16
52 H 0.07 1.53 6.00 -2.39 -0.01 1.52 16
Total: -1.00 -69.20 404.61 -3.05 -72.24
By element:
Atomic # 1 Polarization: 41.59 SS G_CDS: -0.57 Total: 41.02 kcal
Atomic # 6 Polarization: -20.76 SS G_CDS: 7.36 Total: -13.40 kcal
Atomic # 7 Polarization: -101.46 SS G_CDS: -11.80 Total: -113.26 kcal
Atomic # 8 Polarization: -28.29 SS G_CDS: -0.05 Total: -28.34 kcal
Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal
Total: -69.20 -3.05 -72.24 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001475839211.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.953 kcal
(2) G-P(sol) polarization free energy of solvation -69.195 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.242 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.046 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.241 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.287 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.45 seconds