Wall clock time and date at job start Wed Apr 1 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46907 * 2 1 4 4 C 1.52995 * 109.47328 * 240.00128 * 2 1 3 5 5 N 1.46500 * 109.47406 * 185.00116 * 4 2 1 6 6 C 1.34775 * 120.00363 * 180.02562 * 5 4 2 7 7 O 1.21579 * 119.99872 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00350 * 180.02562 * 6 5 4 9 9 C 1.39234 * 120.00422 * 176.69183 * 8 6 5 10 10 C 1.39488 * 119.83369 * 217.51899 * 9 8 6 11 11 C 1.36375 * 120.16527 * 179.75761 * 10 9 8 12 12 C 1.40872 * 119.83179 * 0.53377 * 11 10 9 13 13 C 1.41153 * 120.16540 * 179.69869 * 12 11 10 14 14 H 1.07997 * 119.99944 * 157.94821 * 13 12 11 15 15 C 1.39894 * 119.99934 * 337.94513 * 13 12 11 16 16 N 1.30880 * 119.99923 * 327.61367 * 15 13 12 17 17 Si 1.86803 * 120.00312 * 147.62028 * 15 13 12 18 18 H 1.48495 * 109.47045 * 94.98260 * 17 15 13 19 19 H 1.48495 * 109.46977 * 214.98824 * 17 15 13 20 20 H 1.48501 * 109.46590 * 334.98278 * 17 15 13 21 21 C 1.40870 * 119.66782 * 359.72062 * 12 11 10 22 22 C 1.36372 * 119.83223 * 359.97438 * 21 12 11 23 23 N 1.46900 * 109.47050 * 119.99827 * 2 1 3 24 24 C 1.46955 * 110.99815 * 300.00071 * 23 2 1 25 25 C 1.53055 * 109.36224 * 183.18774 * 24 23 2 26 26 N 1.46958 * 109.36611 * 301.60208 * 25 24 23 27 27 C 1.46900 * 111.00078 * 183.18852 * 26 25 24 28 28 C 1.46956 * 110.88091 * 59.31718 * 26 25 24 29 29 C 1.46952 * 110.99777 * 63.80236 * 23 2 1 30 30 H 1.08996 * 109.47210 * 300.00476 * 1 2 3 31 31 H 1.09002 * 109.46894 * 60.00368 * 1 2 3 32 32 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47179 * 304.99814 * 4 2 1 34 34 H 1.09001 * 109.47294 * 65.00146 * 4 2 1 35 35 H 0.97005 * 119.99848 * 359.97438 * 5 4 2 36 36 H 0.97003 * 119.99425 * 356.68937 * 8 6 5 37 37 H 1.07995 * 119.91462 * 359.97438 * 10 9 8 38 38 H 1.08006 * 120.08374 * 180.25520 * 11 10 9 39 39 H 0.97009 * 120.00203 * 179.97438 * 16 15 13 40 40 H 1.08008 * 120.07992 * 179.97438 * 21 12 11 41 41 H 1.07997 * 119.91590 * 180.02562 * 22 21 12 42 42 H 1.08997 * 109.48981 * 63.22281 * 24 23 2 43 43 H 1.09000 * 109.50857 * 303.16252 * 24 23 2 44 44 H 1.08999 * 109.48822 * 181.63195 * 25 24 23 45 45 H 1.09000 * 109.48879 * 61.56868 * 25 24 23 46 46 H 1.08996 * 109.47319 * 59.99690 * 27 26 25 47 47 H 1.08998 * 109.47037 * 299.99579 * 27 26 25 48 48 H 1.09001 * 109.46831 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.48841 * 60.64926 * 28 26 25 50 50 H 1.08999 * 109.49001 * 180.71145 * 28 26 25 51 51 H 1.09000 * 109.48985 * 296.77828 * 29 23 2 52 52 H 1.09000 * 109.48988 * 56.82438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4282 -2.1911 7 8 3.5686 -1.8843 -3.1422 8 7 5.5163 -1.5254 -2.1369 9 6 6.2059 -2.2073 -3.1359 10 6 7.3188 -2.9811 -2.8067 11 6 7.9963 -3.6557 -3.7791 12 6 7.5764 -3.5606 -5.1204 13 6 8.2763 -4.2508 -6.1334 14 1 7.7866 -4.4794 -7.0684 15 6 9.6044 -4.6387 -5.9262 16 7 10.3924 -3.9038 -5.1833 17 14 10.2531 -6.2053 -6.7100 18 1 10.9213 -5.8762 -7.9946 19 1 11.2293 -6.8491 -5.7948 20 1 9.1240 -7.1361 -6.9635 21 6 6.4548 -2.7728 -5.4458 22 6 5.7836 -2.1090 -4.4616 23 7 2.0196 -0.6925 1.1995 24 6 1.5484 -0.0260 2.4215 25 6 2.1434 -0.7285 3.6442 26 7 1.7480 -2.1438 3.6336 27 6 2.2376 -2.8362 4.8331 28 6 2.2192 -2.8101 2.4115 29 6 1.6241 -2.1077 1.1888 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6055 -1.7198 -1.2951 34 1 1.7517 -0.1582 -2.1369 35 1 3.9825 -0.4621 -0.4318 36 1 6.0026 -1.1202 -1.4018 37 1 7.6426 -3.0489 -1.7787 38 1 8.8554 -4.2578 -3.5222 39 1 11.3132 -4.1729 -5.0393 40 1 6.1273 -2.6949 -6.4720 41 1 4.9233 -1.5050 -4.7095 42 1 0.4605 -0.0764 2.4668 43 1 1.8641 1.0172 2.4120 44 1 1.7723 -0.2539 4.5526 45 1 3.2305 -0.6544 3.6130 46 1 1.8198 -2.3633 5.7217 47 1 3.3255 -2.7776 4.8678 48 1 1.9314 -3.8818 4.7994 49 1 3.3070 -2.7597 2.3662 50 1 1.9033 -3.8533 2.4212 51 1 0.5371 -2.1818 1.2200 52 1 1.9950 -2.5821 0.2802 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475839212.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:03 Heat of formation + Delta-G solvation = 11.910565 kcal Electronic energy + Delta-G solvation = -30350.189468 eV Core-core repulsion = 26349.577831 eV Total energy + Delta-G solvation = -4000.611637 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.26651 -39.49384 -37.50352 -36.77162 -34.43611 -33.88688 -32.91258 -31.42237 -31.26901 -29.48644 -28.88620 -27.76557 -26.50682 -24.59899 -24.25196 -23.70881 -21.66444 -21.24621 -20.72543 -19.93022 -19.46782 -17.79890 -17.21549 -16.92312 -16.59301 -15.69957 -15.40836 -15.28445 -15.15231 -15.03196 -14.82896 -14.81745 -14.12189 -13.99443 -13.84848 -13.36709 -13.14385 -12.97384 -12.85280 -12.66233 -12.51511 -12.16266 -12.05953 -12.01256 -11.95705 -11.91038 -11.68436 -11.34890 -11.21816 -11.10242 -10.97103 -10.89095 -10.81167 -10.46872 -10.12218 -9.65459 -9.50639 -9.06400 -8.79892 -8.75892 -8.59382 -8.55017 -7.46663 -7.05116 -6.80066 -4.19533 2.73496 3.07150 3.08753 3.14652 3.17434 3.26091 3.55834 3.59837 3.83252 3.94220 4.43366 4.49028 4.58234 4.69363 4.73320 4.86584 4.89911 4.96262 4.99188 5.04439 5.16261 5.19882 5.24668 5.34085 5.43845 5.46930 5.51649 5.55415 5.58752 5.65406 5.74719 5.78586 5.83380 5.93002 6.26319 6.50058 6.55866 6.60744 6.72160 6.79623 6.84696 6.86167 6.97693 7.07508 7.19577 7.37363 7.42806 7.67143 7.97767 8.05242 8.11148 8.34260 8.63005 8.64049 8.91510 8.99976 9.25784 10.08986 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017199 B = 0.002034 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.606847 B =13762.090704 C =14781.250142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.069 3.931 3 H 0.090 0.910 4 C 0.149 3.851 5 N -0.743 5.743 6 C 0.693 3.307 7 O -0.585 6.585 8 N -0.666 5.666 9 C 0.003 3.997 10 C -0.105 4.105 11 C -0.171 4.171 12 C 0.111 3.889 13 C -0.468 4.468 14 H 0.081 0.919 15 C 0.088 3.912 16 N -0.772 5.772 17 Si 0.894 3.106 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.258 1.258 21 C -0.223 4.223 22 C -0.067 4.067 23 N -0.530 5.530 24 C 0.055 3.945 25 C 0.057 3.943 26 N -0.546 5.546 27 C 0.025 3.975 28 C 0.057 3.943 29 C 0.051 3.949 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.398 0.602 36 H 0.389 0.611 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.282 0.718 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.047 0.953 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.042 0.958 46 H 0.067 0.933 47 H 0.026 0.974 48 H 0.068 0.932 49 H 0.044 0.956 50 H 0.078 0.922 51 H 0.045 0.955 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.604 7.235 18.841 24.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.040 4.040 3 H 0.108 0.892 4 C 0.024 3.976 5 N -0.400 5.400 6 C 0.394 3.606 7 O -0.463 6.463 8 N -0.312 5.312 9 C -0.090 4.090 10 C -0.126 4.126 11 C -0.190 4.190 12 C 0.108 3.892 13 C -0.496 4.496 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.395 5.395 17 Si 0.718 3.282 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.181 1.181 21 C -0.243 4.243 22 C -0.087 4.087 23 N -0.255 5.255 24 C -0.073 4.073 25 C -0.072 4.072 26 N -0.271 5.271 27 C -0.123 4.123 28 C -0.071 4.071 29 C -0.077 4.077 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.233 0.767 36 H 0.222 0.778 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.086 0.914 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.062 0.938 50 H 0.097 0.903 51 H 0.064 0.936 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.930 6.849 18.057 24.411 hybrid contribution 0.908 -0.321 0.528 1.098 sum -14.022 6.529 18.585 24.179 Atomic orbital electron populations 1.22372 0.96327 1.02842 1.02753 1.21989 0.93552 0.98716 0.89721 0.89157 1.21146 0.80067 1.00386 0.96047 1.44915 1.06787 1.64458 1.23850 1.16043 0.82037 0.79519 0.83003 1.90899 1.67819 1.53619 1.33972 1.42042 1.04211 1.57532 1.27447 1.16857 0.99040 1.06109 0.86973 1.20152 0.96725 0.98156 0.97552 1.20600 1.01951 1.04108 0.92389 1.17580 0.90601 0.88620 0.92406 1.19469 0.95971 1.32210 1.01937 0.90123 1.25916 0.96758 0.96777 0.93822 1.69960 1.06239 1.33313 1.30034 0.86540 0.79241 0.82830 0.79624 1.19537 1.19963 1.18143 1.20602 1.01800 1.04774 0.97098 1.20331 0.98128 0.99120 0.91155 1.62358 1.59193 1.02461 1.01507 1.22176 0.98433 0.97769 0.88961 1.22162 0.98664 0.88461 0.97879 1.62178 1.59852 1.02520 1.02527 1.22340 0.97919 0.99443 0.92628 1.22173 0.98321 0.97830 0.88802 1.22257 0.98723 0.88371 0.98368 0.91870 0.91500 0.91931 0.91854 0.91421 0.76727 0.77768 0.89430 0.87564 0.90737 0.88849 0.87890 0.93507 0.90315 0.90495 0.93928 0.91445 0.95498 0.91348 0.93801 0.90344 0.93635 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 8.50 37.16 0.32 -0.96 16 2 C 0.07 0.55 2.59 -67.72 -0.18 0.38 16 3 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.15 1.66 4.52 -4.04 -0.02 1.64 16 5 N -0.74 -9.60 5.39 -65.23 -0.35 -9.95 16 6 C 0.69 12.63 8.37 -86.92 -0.73 11.90 16 7 O -0.59 -13.22 13.96 5.30 0.07 -13.14 16 8 N -0.67 -12.28 5.30 -14.10 -0.07 -12.35 16 9 C 0.00 0.06 6.25 -83.57 -0.52 -0.46 16 10 C -0.11 -2.47 9.90 -39.79 -0.39 -2.87 16 11 C -0.17 -4.46 8.74 -39.26 -0.34 -4.80 16 12 C 0.11 3.03 5.57 -106.80 -0.60 2.43 16 13 C -0.47 -12.62 8.94 -37.86 -0.34 -12.96 16 14 H 0.08 2.11 8.02 -52.49 -0.42 1.69 16 15 C 0.09 2.23 4.77 -17.34 -0.08 2.14 16 16 N -0.77 -19.83 11.78 55.54 0.65 -19.18 16 17 Si 0.89 18.55 29.66 -169.99 -5.04 13.51 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 21 C -0.22 -5.84 9.74 -39.26 -0.38 -6.22 16 22 C -0.07 -1.68 8.59 -39.79 -0.34 -2.02 16 23 N -0.53 -4.36 4.18 -226.49 -0.95 -5.31 16 24 C 0.05 0.39 5.13 -3.77 -0.02 0.37 16 25 C 0.06 0.42 5.62 -3.76 -0.02 0.40 16 26 N -0.55 -4.56 4.97 -242.75 -1.21 -5.76 16 27 C 0.02 0.17 9.60 60.06 0.58 0.75 16 28 C 0.06 0.51 5.62 -3.77 -0.02 0.49 16 29 C 0.05 0.47 4.83 -3.77 -0.02 0.45 16 30 H 0.06 0.40 6.48 -51.93 -0.34 0.06 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 33 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.40 4.34 8.16 -40.82 -0.33 4.01 16 36 H 0.39 5.80 8.84 -40.82 -0.36 5.44 16 37 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.11 2.81 6.53 -52.48 -0.34 2.46 16 39 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 40 H 0.09 2.33 8.06 -52.48 -0.42 1.91 16 41 H 0.10 2.56 6.44 -52.49 -0.34 2.22 16 42 H 0.05 0.35 6.48 -51.93 -0.34 0.01 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 49 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.68 8.13 -51.93 -0.42 0.25 16 51 H 0.05 0.42 6.57 -51.93 -0.34 0.08 16 52 H 0.09 0.96 6.17 -51.93 -0.32 0.63 16 LS Contribution 404.61 15.07 6.10 6.10 Total: -1.00 -30.89 404.61 -12.34 -43.24 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -8.44 Total: 12.19 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -3.11 Total: -9.34 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -1.92 Total: -52.55 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.07 Total: -13.14 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.04 Total: 13.51 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.89 -12.34 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475839212.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.147 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds