Wall clock time and date at job start Wed Apr 1 2020 05:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.46907 * 2 1 4 4 C 1.52995 * 109.47328 * 240.00128 * 2 1 3 5 5 N 1.46500 * 109.47406 * 185.00116 * 4 2 1 6 6 C 1.34775 * 120.00363 * 180.02562 * 5 4 2 7 7 O 1.21579 * 119.99872 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00350 * 180.02562 * 6 5 4 9 9 C 1.39234 * 120.00422 * 176.69183 * 8 6 5 10 10 C 1.39488 * 119.83369 * 217.51899 * 9 8 6 11 11 C 1.36375 * 120.16527 * 179.75761 * 10 9 8 12 12 C 1.40872 * 119.83179 * 0.53377 * 11 10 9 13 13 C 1.41153 * 120.16540 * 179.69869 * 12 11 10 14 14 H 1.07997 * 119.99944 * 157.94821 * 13 12 11 15 15 C 1.39894 * 119.99934 * 337.94513 * 13 12 11 16 16 N 1.30880 * 119.99923 * 327.61367 * 15 13 12 17 17 Si 1.86803 * 120.00312 * 147.62028 * 15 13 12 18 18 H 1.48495 * 109.47045 * 94.98260 * 17 15 13 19 19 H 1.48495 * 109.46977 * 214.98824 * 17 15 13 20 20 H 1.48501 * 109.46590 * 334.98278 * 17 15 13 21 21 C 1.40870 * 119.66782 * 359.72062 * 12 11 10 22 22 C 1.36372 * 119.83223 * 359.97438 * 21 12 11 23 23 N 1.46900 * 109.47050 * 119.99827 * 2 1 3 24 24 C 1.46955 * 110.99815 * 300.00071 * 23 2 1 25 25 C 1.53055 * 109.36224 * 183.18774 * 24 23 2 26 26 N 1.46958 * 109.36611 * 301.60208 * 25 24 23 27 27 C 1.46900 * 111.00078 * 183.18852 * 26 25 24 28 28 C 1.46956 * 110.88091 * 59.31718 * 26 25 24 29 29 C 1.46952 * 110.99777 * 63.80236 * 23 2 1 30 30 H 1.08996 * 109.47210 * 300.00476 * 1 2 3 31 31 H 1.09002 * 109.46894 * 60.00368 * 1 2 3 32 32 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47179 * 304.99814 * 4 2 1 34 34 H 1.09001 * 109.47294 * 65.00146 * 4 2 1 35 35 H 0.97005 * 119.99848 * 359.97438 * 5 4 2 36 36 H 0.97003 * 119.99425 * 356.68937 * 8 6 5 37 37 H 1.07995 * 119.91462 * 359.97438 * 10 9 8 38 38 H 1.08006 * 120.08374 * 180.25520 * 11 10 9 39 39 H 0.97009 * 120.00203 * 179.97438 * 16 15 13 40 40 H 1.08008 * 120.07992 * 179.97438 * 21 12 11 41 41 H 1.07997 * 119.91590 * 180.02562 * 22 21 12 42 42 H 1.08997 * 109.48981 * 63.22281 * 24 23 2 43 43 H 1.09000 * 109.50857 * 303.16252 * 24 23 2 44 44 H 1.08999 * 109.48822 * 181.63195 * 25 24 23 45 45 H 1.09000 * 109.48879 * 61.56868 * 25 24 23 46 46 H 1.08996 * 109.47319 * 59.99690 * 27 26 25 47 47 H 1.08998 * 109.47037 * 299.99579 * 27 26 25 48 48 H 1.09001 * 109.46831 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.48841 * 60.64926 * 28 26 25 50 50 H 1.08999 * 109.49001 * 180.71145 * 28 26 25 51 51 H 1.09000 * 109.48985 * 296.77828 * 29 23 2 52 52 H 1.09000 * 109.48988 * 56.82438 * 29 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4282 -2.1911 7 8 3.5686 -1.8843 -3.1422 8 7 5.5163 -1.5254 -2.1369 9 6 6.2059 -2.2073 -3.1359 10 6 7.3188 -2.9811 -2.8067 11 6 7.9963 -3.6557 -3.7791 12 6 7.5764 -3.5606 -5.1204 13 6 8.2763 -4.2508 -6.1334 14 1 7.7866 -4.4794 -7.0684 15 6 9.6044 -4.6387 -5.9262 16 7 10.3924 -3.9038 -5.1833 17 14 10.2531 -6.2053 -6.7100 18 1 10.9213 -5.8762 -7.9946 19 1 11.2293 -6.8491 -5.7948 20 1 9.1240 -7.1361 -6.9635 21 6 6.4548 -2.7728 -5.4458 22 6 5.7836 -2.1090 -4.4616 23 7 2.0196 -0.6925 1.1995 24 6 1.5484 -0.0260 2.4215 25 6 2.1434 -0.7285 3.6442 26 7 1.7480 -2.1438 3.6336 27 6 2.2376 -2.8362 4.8331 28 6 2.2192 -2.8101 2.4115 29 6 1.6241 -2.1077 1.1888 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6055 -1.7198 -1.2951 34 1 1.7517 -0.1582 -2.1369 35 1 3.9825 -0.4621 -0.4318 36 1 6.0026 -1.1202 -1.4018 37 1 7.6426 -3.0489 -1.7787 38 1 8.8554 -4.2578 -3.5222 39 1 11.3132 -4.1729 -5.0393 40 1 6.1273 -2.6949 -6.4720 41 1 4.9233 -1.5050 -4.7095 42 1 0.4605 -0.0764 2.4668 43 1 1.8641 1.0172 2.4120 44 1 1.7723 -0.2539 4.5526 45 1 3.2305 -0.6544 3.6130 46 1 1.8198 -2.3633 5.7217 47 1 3.3255 -2.7776 4.8678 48 1 1.9314 -3.8818 4.7994 49 1 3.3070 -2.7597 2.3662 50 1 1.9033 -3.8533 2.4212 51 1 0.5371 -2.1818 1.2200 52 1 1.9950 -2.5821 0.2802 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475839212.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:01 Heat of formation + Delta-G solvation = -9.758439 kcal Electronic energy + Delta-G solvation = -30351.129106 eV Core-core repulsion = 26349.577831 eV Total energy + Delta-G solvation = -4001.551276 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.41665 -40.58687 -39.18540 -37.67971 -36.15107 -35.14972 -34.63763 -32.24590 -31.92550 -31.42712 -30.71060 -28.36928 -27.67051 -26.23263 -24.93220 -24.39748 -23.41276 -22.59212 -22.02147 -21.51791 -20.17767 -19.39077 -19.00721 -18.22682 -17.56578 -17.05201 -16.56918 -16.29734 -16.11826 -15.98385 -15.83228 -15.72073 -15.66440 -15.23222 -15.02355 -14.73618 -14.48828 -14.01578 -13.94844 -13.90619 -13.77021 -13.47976 -13.38426 -13.22112 -12.84708 -12.77114 -12.65895 -12.64586 -12.62219 -12.34388 -12.30901 -11.90895 -11.85966 -11.61322 -11.55481 -11.51971 -11.22993 -10.90737 -10.48018 -9.97942 -9.44810 -9.42212 -9.21449 -8.94554 -8.67659 -6.19716 0.89908 1.16319 1.38618 1.46055 1.57060 1.86965 2.20854 2.28216 2.69532 2.85126 2.98546 3.50044 3.70018 3.74248 3.86062 4.09166 4.14416 4.21826 4.31742 4.32346 4.40955 4.41913 4.52324 4.53512 4.61149 4.62699 4.67595 4.72203 4.80101 4.87123 4.92013 4.93273 4.99324 5.00826 5.06455 5.12662 5.13312 5.19197 5.29777 5.31300 5.48993 5.58091 5.66020 5.82359 5.95019 5.96633 6.06053 6.14761 6.15365 6.17466 6.30153 6.40693 6.65413 6.92129 7.03348 7.26260 7.76541 8.23335 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017199 B = 0.002034 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.606847 B =13762.090704 C =14781.250142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.080 3.920 3 H 0.106 0.894 4 C 0.148 3.852 5 N -0.717 5.717 6 C 0.692 3.308 7 O -0.630 6.630 8 N -0.659 5.659 9 C 0.017 3.983 10 C -0.103 4.103 11 C -0.188 4.188 12 C 0.082 3.918 13 C -0.507 4.507 14 H 0.074 0.926 15 C 0.052 3.948 16 N -0.800 5.800 17 Si 0.971 3.029 18 H -0.260 1.260 19 H -0.261 1.261 20 H -0.262 1.262 21 C -0.244 4.244 22 C -0.078 4.078 23 N -0.534 5.534 24 C 0.057 3.943 25 C 0.056 3.944 26 N -0.553 5.553 27 C 0.025 3.975 28 C 0.060 3.940 29 C 0.057 3.943 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.413 0.587 36 H 0.410 0.590 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.294 0.706 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.047 0.953 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.034 0.966 46 H 0.079 0.921 47 H 0.023 0.977 48 H 0.069 0.931 49 H 0.030 0.970 50 H 0.078 0.922 51 H 0.045 0.955 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.811 7.930 21.037 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.028 4.028 3 H 0.124 0.876 4 C 0.023 3.977 5 N -0.374 5.374 6 C 0.392 3.608 7 O -0.511 6.511 8 N -0.307 5.307 9 C -0.077 4.077 10 C -0.123 4.123 11 C -0.208 4.208 12 C 0.079 3.921 13 C -0.535 4.535 14 H 0.092 0.908 15 C -0.167 4.167 16 N -0.424 5.424 17 Si 0.791 3.209 18 H -0.184 1.184 19 H -0.185 1.185 20 H -0.186 1.186 21 C -0.264 4.264 22 C -0.098 4.098 23 N -0.259 5.259 24 C -0.071 4.071 25 C -0.072 4.072 26 N -0.278 5.278 27 C -0.123 4.123 28 C -0.069 4.069 29 C -0.071 4.071 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.250 0.750 36 H 0.246 0.754 37 H 0.139 0.861 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.118 0.882 42 H 0.066 0.934 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.053 0.947 46 H 0.098 0.902 47 H 0.042 0.958 48 H 0.088 0.912 49 H 0.049 0.951 50 H 0.096 0.904 51 H 0.063 0.937 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.148 7.602 20.329 26.467 hybrid contribution 0.869 -0.433 -0.044 0.972 sum -14.279 7.169 20.285 25.821 Atomic orbital electron populations 1.22321 0.95233 1.02541 1.03644 1.21907 0.94219 0.98697 0.88020 0.87572 1.21286 0.78551 1.00091 0.97778 1.44722 1.07495 1.62522 1.22639 1.16208 0.81789 0.79441 0.83323 1.90878 1.68633 1.55549 1.36073 1.41827 1.04493 1.57323 1.27091 1.16880 0.98528 1.05017 0.87262 1.20406 0.96221 0.97004 0.98662 1.20633 1.02411 1.05180 0.92587 1.17895 0.91368 0.89427 0.93419 1.19668 0.97339 1.34315 1.02134 0.90836 1.26710 0.96215 0.99461 0.94361 1.69952 1.07018 1.34635 1.30752 0.85386 0.78470 0.77943 0.79119 1.18409 1.18463 1.18639 1.20724 1.02422 1.05680 0.97534 1.20420 0.98048 0.99233 0.92086 1.62364 1.59412 1.02001 1.02152 1.22227 0.98432 0.98398 0.88013 1.22220 0.98244 0.87975 0.98728 1.62214 1.59953 1.03152 1.02507 1.22374 0.97753 0.99626 0.92532 1.22102 0.97399 0.98018 0.89333 1.22110 0.98497 0.89011 0.97495 0.90596 0.90971 0.92848 0.93233 0.91958 0.75043 0.75351 0.86091 0.88348 0.89556 0.89105 0.88165 0.93441 0.88642 0.88991 0.94723 0.90200 0.95832 0.91228 0.95126 0.90405 0.93723 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 8.50 71.98 0.61 -1.49 16 2 C 0.08 1.10 2.59 44.91 0.12 1.22 16 3 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 4 C 0.15 3.14 4.52 86.38 0.39 3.53 16 5 N -0.72 -17.48 5.39 -478.55 -2.58 -20.06 16 6 C 0.69 24.66 8.37 179.06 1.50 26.16 16 7 O -0.63 -28.69 13.96 -3.96 -0.06 -28.74 16 8 N -0.66 -23.41 5.30 -316.79 -1.68 -25.09 16 9 C 0.02 0.78 6.25 38.57 0.24 1.02 16 10 C -0.10 -4.75 9.90 22.14 0.22 -4.53 16 11 C -0.19 -9.99 8.74 22.48 0.20 -9.80 16 12 C 0.08 4.62 5.57 -21.27 -0.12 4.50 16 13 C -0.51 -28.31 8.94 23.39 0.21 -28.10 16 14 H 0.07 4.04 8.02 -2.91 -0.02 4.02 16 15 C 0.05 2.63 4.77 85.24 0.41 3.03 16 16 N -0.80 -41.36 11.78 21.82 0.26 -41.11 16 17 Si 0.97 38.16 29.66 68.60 2.03 40.19 16 18 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 19 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 C -0.24 -13.31 9.74 22.48 0.22 -13.09 16 22 C -0.08 -3.96 8.59 22.13 0.19 -3.77 16 23 N -0.53 -7.69 4.18 -870.48 -3.64 -11.33 16 24 C 0.06 0.65 5.13 86.31 0.44 1.09 16 25 C 0.06 0.70 5.62 86.31 0.49 1.18 16 26 N -0.55 -8.33 4.97 -921.94 -4.58 -12.91 16 27 C 0.03 0.31 9.60 127.69 1.23 1.54 16 28 C 0.06 1.03 5.62 86.31 0.49 1.52 16 29 C 0.06 1.00 4.83 86.31 0.42 1.41 16 30 H 0.08 0.74 6.48 -2.39 -0.02 0.72 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.74 6.56 -2.39 -0.02 0.73 16 33 H 0.05 1.23 6.57 -2.39 -0.02 1.21 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.41 7.98 8.16 -92.70 -0.76 7.22 16 36 H 0.41 11.22 8.84 -92.71 -0.82 10.40 16 37 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 38 H 0.10 5.29 6.53 -2.91 -0.02 5.27 16 39 H 0.29 13.45 8.30 -92.70 -0.77 12.68 16 40 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.10 5.12 6.44 -2.91 -0.02 5.10 16 42 H 0.05 0.56 6.48 -2.39 -0.02 0.55 16 43 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 49 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.08 1.31 8.13 -2.39 -0.02 1.29 16 51 H 0.04 0.79 6.57 -2.39 -0.02 0.77 16 52 H 0.07 1.46 6.17 -2.39 -0.01 1.44 16 Total: -1.00 -68.73 404.61 -3.64 -72.37 By element: Atomic # 1 Polarization: 41.88 SS G_CDS: -0.64 Total: 41.24 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 7.24 Total: -14.57 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -12.22 Total: -110.49 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.06 Total: -28.74 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.19 kcal Total: -68.73 -3.64 -72.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475839212.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.609 kcal (2) G-P(sol) polarization free energy of solvation -68.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds