Wall clock time and date at job start Wed Apr 1 2020 05:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47208 * 2 1 4 4 N 1.46501 * 109.47175 * 239.99972 * 2 1 3 5 5 C 1.36937 * 120.00019 * 85.00141 * 4 2 1 6 6 H 1.07997 * 120.00087 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99682 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99736 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00244 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47254 * 90.00444 * 9 7 5 11 11 H 1.48501 * 109.47388 * 210.00480 * 9 7 5 12 12 H 1.48498 * 109.47331 * 330.00401 * 9 7 5 13 13 C 1.52999 * 109.46957 * 119.99655 * 2 1 3 14 14 H 1.08998 * 109.58886 * 302.49718 * 13 2 1 15 15 C 1.53200 * 109.58528 * 62.92676 * 13 2 1 16 16 C 1.53042 * 109.31113 * 174.42126 * 15 13 2 17 17 C 1.53037 * 109.53636 * 298.62993 * 16 15 13 18 18 C 1.52765 * 109.38505 * 61.24501 * 17 16 15 19 19 N 1.46924 * 109.00603 * 305.58785 * 18 17 16 20 20 C 1.34782 * 120.63096 * 233.58715 * 19 18 17 21 21 O 1.21569 * 119.99920 * 185.62721 * 20 19 18 22 22 C 1.47716 * 119.99670 * 5.61992 * 20 19 18 23 23 N 1.32199 * 126.67495 * 354.09008 * 22 20 19 24 24 N 1.28854 * 110.14720 * 179.97438 * 23 22 20 25 25 H 0.96998 * 124.98188 * 179.97438 * 24 23 22 26 26 C 1.34314 * 110.03726 * 359.93063 * 24 23 22 27 27 C 1.35577 * 107.21735 * 0.13065 * 26 24 23 28 28 C 1.50379 * 124.61682 * 179.84042 * 27 26 24 29 29 C 1.53480 * 108.28820 * 343.77054 * 28 27 26 30 30 C 1.53103 * 109.50733 * 49.48466 * 29 28 27 31 31 C 1.50634 * 128.91296 * 180.24912 * 26 24 23 32 32 H 1.09001 * 109.47188 * 174.94579 * 1 2 3 33 33 H 1.09000 * 109.47192 * 294.94912 * 1 2 3 34 34 H 1.08996 * 109.47229 * 54.94625 * 1 2 3 35 35 H 0.97000 * 119.99675 * 264.99895 * 4 2 1 36 36 H 0.96994 * 120.00111 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.49580 * 294.37105 * 15 13 2 38 38 H 1.09000 * 109.49685 * 54.46805 * 15 13 2 39 39 H 1.09004 * 109.46246 * 58.65350 * 16 15 13 40 40 H 1.08995 * 109.45584 * 178.61331 * 16 15 13 41 41 H 1.09000 * 109.49682 * 181.31556 * 17 16 15 42 42 H 1.08995 * 109.49985 * 301.38289 * 17 16 15 43 43 H 1.08996 * 109.51410 * 185.70546 * 18 17 16 44 44 H 1.08997 * 109.43034 * 65.42079 * 18 17 16 45 45 H 1.09002 * 109.70486 * 224.06605 * 28 27 26 46 46 H 1.08998 * 109.70014 * 103.46430 * 28 27 26 47 47 H 1.09001 * 109.46185 * 289.47719 * 29 28 27 48 48 H 1.08997 * 109.46237 * 169.49535 * 29 28 27 49 49 H 1.09000 * 109.44341 * 49.99595 * 30 29 28 50 50 H 1.09003 * 109.44347 * 169.93203 * 30 29 28 51 51 H 1.09002 * 109.65225 * 43.51309 * 31 26 24 52 52 H 1.09000 * 109.69258 * 282.96301 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6113 -0.6621 -3.5092 8 7 2.7376 -0.0053 -4.6429 9 14 3.0556 -2.4745 -3.4253 10 1 1.8582 -3.2929 -3.7442 11 1 4.1306 -2.7667 -4.4072 12 1 3.5310 -2.8048 -2.0578 13 6 2.0399 -0.7212 1.2493 14 1 1.6416 -0.2353 2.1399 15 6 1.5917 -2.1858 1.2157 16 6 2.2197 -2.9343 2.3936 17 6 3.7447 -2.8930 2.2718 18 6 4.2175 -1.4410 2.3139 19 7 3.5082 -0.6766 1.2789 20 6 4.1917 0.0473 0.3703 21 8 3.5942 0.7560 -0.4162 22 6 5.6667 -0.0204 0.3304 23 7 6.4514 -0.6554 1.1841 24 7 7.6863 -0.5055 0.8479 25 1 8.4422 -0.8810 1.3257 26 6 7.7731 0.2463 -0.2617 27 6 6.5087 0.5773 -0.6222 28 6 6.1536 1.4203 -1.8158 29 6 7.4195 2.1518 -2.2825 30 6 8.5702 1.1503 -2.4127 31 6 9.0019 0.6776 -1.0187 32 1 -0.3633 -1.0237 -0.0905 33 1 -0.3633 0.4335 0.9318 34 1 -0.3633 0.5902 -0.8412 35 1 2.2490 -1.6318 -1.1525 36 1 3.0609 -0.4626 -5.4348 37 1 0.5054 -2.2356 1.2905 38 1 1.9139 -2.6434 0.2804 39 1 1.9170 -2.4610 3.3277 40 1 1.8828 -3.9709 2.3862 41 1 4.1907 -3.4462 3.0983 42 1 4.0465 -3.3446 1.3268 43 1 5.2905 -1.4020 2.1261 44 1 4.0004 -1.0173 3.2944 45 1 5.3902 2.1472 -1.5383 46 1 5.7807 0.7831 -2.6177 47 1 7.6856 2.9180 -1.5542 48 1 7.2333 2.6190 -3.2495 49 1 8.2405 0.2934 -3.0003 50 1 9.4133 1.6290 -2.9108 51 1 9.6888 -0.1635 -1.1124 52 1 9.4915 1.4949 -0.4891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479822086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:18 Heat of formation + Delta-G solvation = 89.065800 kcal Electronic energy + Delta-G solvation = -33834.609448 eV Core-core repulsion = 29837.343513 eV Total energy + Delta-G solvation = -3997.265935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.63308 -39.90371 -36.87045 -36.62562 -35.25845 -32.65521 -32.20354 -31.89084 -29.98174 -29.72299 -29.23634 -28.32595 -25.40987 -23.90968 -23.52211 -23.25830 -22.44487 -21.92628 -20.53680 -19.74632 -18.81057 -18.28645 -17.62655 -17.26139 -16.16175 -15.75883 -15.38368 -14.73433 -14.49849 -14.36790 -14.13371 -13.84759 -13.77499 -13.57897 -13.39224 -13.36724 -13.06606 -12.85607 -12.64046 -12.50951 -12.25945 -12.07240 -11.86049 -11.80024 -11.44514 -11.27690 -11.20025 -10.73774 -10.70266 -10.62434 -10.59949 -10.54259 -10.51171 -10.30844 -10.06846 -9.87733 -9.56510 -9.22947 -9.04204 -8.66604 -8.34651 -8.20362 -7.90174 -6.83250 -5.43922 -2.72047 1.89251 2.44715 2.92096 3.51440 3.53077 3.54755 3.58796 4.11962 4.56064 4.73001 4.85228 4.87604 4.97310 5.03465 5.11145 5.17072 5.35844 5.36633 5.44641 5.50718 5.56611 5.62104 5.65555 5.69780 5.72556 5.74827 5.80306 5.87229 5.99958 6.03649 6.07865 6.14323 6.18823 6.21954 6.26149 6.32227 6.38220 6.42260 6.45087 6.50689 6.55010 6.65757 6.72619 6.77635 6.99639 7.08251 7.09762 7.26050 7.46261 8.00955 8.19025 8.36635 8.73978 9.06393 9.54858 10.27604 10.48910 11.76463 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.006116 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.259143 B = 4576.998228 C = 6277.932145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.171 3.829 3 H 0.095 0.905 4 N -0.734 5.734 5 C -0.176 4.176 6 H 0.089 0.911 7 C -0.007 4.007 8 N -0.945 5.945 9 Si 0.867 3.133 10 H -0.292 1.292 11 H -0.297 1.297 12 H -0.285 1.285 13 C 0.144 3.856 14 H 0.067 0.933 15 C -0.133 4.133 16 C -0.118 4.118 17 C -0.132 4.132 18 C 0.078 3.922 19 N -0.604 5.604 20 C 0.581 3.419 21 O -0.443 6.443 22 C 0.017 3.983 23 N -0.280 5.280 24 N -0.387 5.387 25 H 0.437 0.563 26 C 0.001 3.999 27 C -0.129 4.129 28 C -0.044 4.044 29 C -0.118 4.118 30 C -0.116 4.116 31 C -0.043 4.043 32 H 0.043 0.957 33 H 0.035 0.965 34 H 0.057 0.943 35 H 0.354 0.646 36 H 0.251 0.749 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.136 0.864 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.073 0.927 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.388 -1.130 15.265 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.061 3.939 3 H 0.113 0.887 4 N -0.377 5.377 5 C -0.306 4.306 6 H 0.107 0.893 7 C -0.200 4.200 8 N -0.597 5.597 9 Si 0.700 3.300 10 H -0.219 1.219 11 H -0.224 1.224 12 H -0.212 1.212 13 C 0.041 3.959 14 H 0.084 0.916 15 C -0.171 4.171 16 C -0.156 4.156 17 C -0.171 4.171 18 C -0.047 4.047 19 N -0.340 5.340 20 C 0.365 3.635 21 O -0.310 6.310 22 C -0.143 4.143 23 N -0.116 5.116 24 N -0.098 5.098 25 H 0.280 0.720 26 C -0.126 4.126 27 C -0.139 4.139 28 C -0.082 4.082 29 C -0.156 4.156 30 C -0.154 4.154 31 C -0.082 4.082 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.187 0.813 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.153 0.847 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.092 0.908 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.999 -1.158 15.568 19.097 hybrid contribution 0.839 -1.694 -0.278 1.911 sum 11.838 -2.852 15.290 19.546 Atomic orbital electron populations 1.22542 0.99651 1.00807 0.99867 1.20740 0.90412 0.98458 0.84247 0.88710 1.42826 1.79130 1.08544 1.07204 1.18966 1.32250 0.95033 0.84383 0.89303 1.24466 1.03428 0.96029 0.96069 1.69672 1.55432 1.34548 1.00064 0.86774 0.77837 0.89043 0.76312 1.21910 1.22432 1.21181 1.21609 0.78972 0.95630 0.99727 0.91554 1.21992 1.00447 0.95883 0.98775 1.21528 0.95501 1.00004 0.98530 1.21808 0.96090 0.97343 1.01846 1.22459 1.01456 0.90243 0.90508 1.47692 1.05974 1.49177 1.31191 1.17002 0.83406 0.82120 0.80926 1.91003 1.65689 1.37526 1.36766 1.22050 0.95020 1.01543 0.95658 1.73293 0.89630 1.23288 1.25344 1.43075 1.06711 1.38913 1.21053 0.71950 1.21091 0.97926 1.01182 0.92409 1.19987 0.90311 1.03764 0.99837 1.20016 0.96728 0.97752 0.93718 1.21650 0.94797 0.97563 1.01594 1.21574 0.98729 1.00108 0.94949 1.20168 0.92065 1.00593 0.95380 0.93811 0.94610 0.92403 0.81264 0.93888 0.90813 0.91373 0.92205 0.92414 0.91671 0.92013 0.84748 0.92927 0.89403 0.89371 0.92282 0.91115 0.91214 0.91268 0.90825 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.07 37.16 0.34 -2.74 16 2 C 0.17 3.49 1.89 -67.93 -0.13 3.36 16 3 H 0.10 2.16 5.85 -52.26 -0.31 1.85 16 4 N -0.73 -17.94 3.30 -53.43 -0.18 -18.12 16 5 C -0.18 -5.07 8.59 -15.06 -0.13 -5.20 16 6 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 7 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 8 N -0.95 -30.49 13.97 55.49 0.78 -29.72 16 9 Si 0.87 23.61 27.74 -169.99 -4.71 18.90 16 10 H -0.29 -7.93 7.11 56.52 0.40 -7.52 16 11 H -0.30 -8.24 7.11 56.52 0.40 -7.83 16 12 H -0.28 -7.57 6.52 56.52 0.37 -7.20 16 13 C 0.14 2.47 2.75 -67.59 -0.19 2.28 16 14 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 15 C -0.13 -2.08 4.82 -26.61 -0.13 -2.21 16 16 C -0.12 -1.52 5.89 -26.69 -0.16 -1.68 16 17 C -0.13 -1.77 6.06 -26.83 -0.16 -1.93 16 18 C 0.08 1.12 6.31 -3.93 -0.02 1.10 16 19 N -0.60 -10.68 2.97 -166.63 -0.50 -11.17 16 20 C 0.58 11.88 7.12 -12.39 -0.09 11.79 16 21 O -0.44 -10.39 8.93 5.31 0.05 -10.34 16 22 C 0.02 0.32 6.89 -82.99 -0.57 -0.26 16 23 N -0.28 -4.28 8.61 33.28 0.29 -3.99 16 24 N -0.39 -4.69 6.82 33.40 0.23 -4.46 16 25 H 0.44 3.37 8.96 -190.21 -1.70 1.66 16 26 C 0.00 0.01 7.12 -82.49 -0.59 -0.57 16 27 C -0.13 -2.26 5.99 -104.88 -0.63 -2.89 16 28 C -0.04 -0.80 5.59 -27.79 -0.16 -0.96 16 29 C -0.12 -1.61 5.91 -26.43 -0.16 -1.77 16 30 C -0.12 -1.31 5.89 -26.47 -0.16 -1.47 16 31 C -0.04 -0.43 6.30 -27.71 -0.17 -0.60 16 32 H 0.04 0.78 6.91 -51.93 -0.36 0.42 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.35 8.82 3.69 -40.82 -0.15 8.67 16 36 H 0.25 7.84 8.31 -40.82 -0.34 7.50 16 37 H 0.07 1.06 6.93 -51.93 -0.36 0.70 16 38 H 0.07 1.28 6.20 -51.93 -0.32 0.95 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.14 1.99 3.69 -116.82 -0.43 1.56 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 46 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 47 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 48 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 50 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 52 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -34.78 383.01 -11.43 -46.20 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -9.96 Total: 10.98 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -3.19 Total: -4.05 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: 0.62 Total: -67.46 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.05 Total: -10.34 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.71 Total: 18.90 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.78 -11.43 -46.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479822086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.268 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds