Wall clock time and date at job start Wed Apr 1 2020 05:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47208 * 2 1 4 4 N 1.46501 * 109.47175 * 239.99972 * 2 1 3 5 5 C 1.36937 * 120.00019 * 85.00141 * 4 2 1 6 6 H 1.07997 * 120.00087 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99682 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99736 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00244 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47254 * 90.00444 * 9 7 5 11 11 H 1.48501 * 109.47388 * 210.00480 * 9 7 5 12 12 H 1.48498 * 109.47331 * 330.00401 * 9 7 5 13 13 C 1.52999 * 109.46957 * 119.99655 * 2 1 3 14 14 H 1.08998 * 109.58886 * 302.49718 * 13 2 1 15 15 C 1.53200 * 109.58528 * 62.92676 * 13 2 1 16 16 C 1.53042 * 109.31113 * 174.42126 * 15 13 2 17 17 C 1.53037 * 109.53636 * 298.62993 * 16 15 13 18 18 C 1.52765 * 109.38505 * 61.24501 * 17 16 15 19 19 N 1.46924 * 109.00603 * 305.58785 * 18 17 16 20 20 C 1.34782 * 120.63096 * 233.58715 * 19 18 17 21 21 O 1.21569 * 119.99920 * 185.62721 * 20 19 18 22 22 C 1.47716 * 119.99670 * 5.61992 * 20 19 18 23 23 N 1.32199 * 126.67495 * 354.09008 * 22 20 19 24 24 N 1.28854 * 110.14720 * 179.97438 * 23 22 20 25 25 H 0.96998 * 124.98188 * 179.97438 * 24 23 22 26 26 C 1.34314 * 110.03726 * 359.93063 * 24 23 22 27 27 C 1.35577 * 107.21735 * 0.13065 * 26 24 23 28 28 C 1.50379 * 124.61682 * 179.84042 * 27 26 24 29 29 C 1.53480 * 108.28820 * 343.77054 * 28 27 26 30 30 C 1.53103 * 109.50733 * 49.48466 * 29 28 27 31 31 C 1.50634 * 128.91296 * 180.24912 * 26 24 23 32 32 H 1.09001 * 109.47188 * 174.94579 * 1 2 3 33 33 H 1.09000 * 109.47192 * 294.94912 * 1 2 3 34 34 H 1.08996 * 109.47229 * 54.94625 * 1 2 3 35 35 H 0.97000 * 119.99675 * 264.99895 * 4 2 1 36 36 H 0.96994 * 120.00111 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.49580 * 294.37105 * 15 13 2 38 38 H 1.09000 * 109.49685 * 54.46805 * 15 13 2 39 39 H 1.09004 * 109.46246 * 58.65350 * 16 15 13 40 40 H 1.08995 * 109.45584 * 178.61331 * 16 15 13 41 41 H 1.09000 * 109.49682 * 181.31556 * 17 16 15 42 42 H 1.08995 * 109.49985 * 301.38289 * 17 16 15 43 43 H 1.08996 * 109.51410 * 185.70546 * 18 17 16 44 44 H 1.08997 * 109.43034 * 65.42079 * 18 17 16 45 45 H 1.09002 * 109.70486 * 224.06605 * 28 27 26 46 46 H 1.08998 * 109.70014 * 103.46430 * 28 27 26 47 47 H 1.09001 * 109.46185 * 289.47719 * 29 28 27 48 48 H 1.08997 * 109.46237 * 169.49535 * 29 28 27 49 49 H 1.09000 * 109.44341 * 49.99595 * 30 29 28 50 50 H 1.09003 * 109.44347 * 169.93203 * 30 29 28 51 51 H 1.09002 * 109.65225 * 43.51309 * 31 26 24 52 52 H 1.09000 * 109.69258 * 282.96301 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6113 -0.6621 -3.5092 8 7 2.7376 -0.0053 -4.6429 9 14 3.0556 -2.4745 -3.4253 10 1 1.8582 -3.2929 -3.7442 11 1 4.1306 -2.7667 -4.4072 12 1 3.5310 -2.8048 -2.0578 13 6 2.0399 -0.7212 1.2493 14 1 1.6416 -0.2353 2.1399 15 6 1.5917 -2.1858 1.2157 16 6 2.2197 -2.9343 2.3936 17 6 3.7447 -2.8930 2.2718 18 6 4.2175 -1.4410 2.3139 19 7 3.5082 -0.6766 1.2789 20 6 4.1917 0.0473 0.3703 21 8 3.5942 0.7560 -0.4162 22 6 5.6667 -0.0204 0.3304 23 7 6.4514 -0.6554 1.1841 24 7 7.6863 -0.5055 0.8479 25 1 8.4422 -0.8810 1.3257 26 6 7.7731 0.2463 -0.2617 27 6 6.5087 0.5773 -0.6222 28 6 6.1536 1.4203 -1.8158 29 6 7.4195 2.1518 -2.2825 30 6 8.5702 1.1503 -2.4127 31 6 9.0019 0.6776 -1.0187 32 1 -0.3633 -1.0237 -0.0905 33 1 -0.3633 0.4335 0.9318 34 1 -0.3633 0.5902 -0.8412 35 1 2.2490 -1.6318 -1.1525 36 1 3.0609 -0.4626 -5.4348 37 1 0.5054 -2.2356 1.2905 38 1 1.9139 -2.6434 0.2804 39 1 1.9170 -2.4610 3.3277 40 1 1.8828 -3.9709 2.3862 41 1 4.1907 -3.4462 3.0983 42 1 4.0465 -3.3446 1.3268 43 1 5.2905 -1.4020 2.1261 44 1 4.0004 -1.0173 3.2944 45 1 5.3902 2.1472 -1.5383 46 1 5.7807 0.7831 -2.6177 47 1 7.6856 2.9180 -1.5542 48 1 7.2333 2.6190 -3.2495 49 1 8.2405 0.2934 -3.0003 50 1 9.4133 1.6290 -2.9108 51 1 9.6888 -0.1635 -1.1124 52 1 9.4915 1.4949 -0.4891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479822086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:17 Heat of formation + Delta-G solvation = 65.647531 kcal Electronic energy + Delta-G solvation = -33835.624941 eV Core-core repulsion = 29837.343513 eV Total energy + Delta-G solvation = -3998.281427 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.82825 -41.34471 -38.23044 -37.79452 -36.96826 -34.29090 -33.78366 -33.25188 -31.76438 -30.91786 -30.44466 -29.87713 -26.77612 -25.55964 -24.85982 -24.62429 -23.91753 -23.08779 -21.83501 -21.24713 -20.03507 -19.82267 -19.25605 -18.76123 -17.49787 -17.02272 -16.85718 -16.42262 -15.91653 -15.80476 -15.40059 -15.34201 -15.16789 -14.96516 -14.75312 -14.61319 -14.52035 -14.21953 -14.09083 -13.89873 -13.83898 -13.46864 -13.27924 -13.22658 -12.99497 -12.89275 -12.63560 -12.52812 -12.32930 -12.02836 -11.82183 -11.78071 -11.74379 -11.68229 -11.57989 -11.47092 -11.34342 -10.89732 -10.75996 -10.20997 -9.82916 -9.59089 -9.40119 -8.90812 -7.83363 -5.06918 0.62920 1.16073 1.26032 1.29584 1.34586 1.86223 2.24943 2.54001 2.64633 3.36136 3.48316 3.67508 3.74032 3.78498 3.92973 3.98582 4.02532 4.04424 4.22127 4.24250 4.30697 4.38213 4.40575 4.42333 4.59446 4.63337 4.68120 4.76164 4.78911 4.84248 4.92948 4.96071 5.00250 5.01507 5.05281 5.09395 5.11045 5.16124 5.20908 5.27127 5.28487 5.35093 5.44243 5.47049 5.50300 5.55820 5.64022 5.94395 6.02338 6.21824 6.38815 6.65245 6.96867 7.27119 7.58177 8.04862 8.24209 9.41142 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.006116 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.259143 B = 4576.998228 C = 6277.932145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.165 3.835 3 H 0.065 0.935 4 N -0.729 5.729 5 C -0.141 4.141 6 H 0.046 0.954 7 C -0.075 4.075 8 N -0.993 5.993 9 Si 0.934 3.066 10 H -0.283 1.283 11 H -0.304 1.304 12 H -0.278 1.278 13 C 0.146 3.854 14 H 0.097 0.903 15 C -0.129 4.129 16 C -0.111 4.111 17 C -0.129 4.129 18 C 0.072 3.928 19 N -0.604 5.604 20 C 0.570 3.430 21 O -0.496 6.496 22 C -0.020 4.020 23 N -0.268 5.268 24 N -0.360 5.360 25 H 0.462 0.538 26 C 0.030 3.970 27 C -0.176 4.176 28 C -0.035 4.035 29 C -0.113 4.113 30 C -0.114 4.114 31 C -0.039 4.039 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.028 0.972 35 H 0.353 0.647 36 H 0.246 0.754 37 H 0.090 0.910 38 H 0.032 0.968 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.033 0.967 43 H 0.134 0.866 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.031 0.969 47 H 0.078 0.922 48 H 0.063 0.937 49 H 0.046 0.954 50 H 0.105 0.895 51 H 0.109 0.891 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.869 -3.327 19.304 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 H 0.082 0.918 4 N -0.372 5.372 5 C -0.273 4.273 6 H 0.064 0.936 7 C -0.263 4.263 8 N -0.648 5.648 9 Si 0.766 3.234 10 H -0.210 1.210 11 H -0.231 1.231 12 H -0.204 1.204 13 C 0.042 3.958 14 H 0.114 0.886 15 C -0.168 4.168 16 C -0.149 4.149 17 C -0.167 4.167 18 C -0.051 4.051 19 N -0.339 5.339 20 C 0.355 3.645 21 O -0.368 6.368 22 C -0.178 4.178 23 N -0.105 5.105 24 N -0.074 5.074 25 H 0.310 0.690 26 C -0.099 4.099 27 C -0.186 4.186 28 C -0.073 4.073 29 C -0.150 4.150 30 C -0.152 4.152 31 C -0.077 4.077 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.187 0.813 36 H 0.055 0.945 37 H 0.108 0.892 38 H 0.051 0.949 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.051 0.949 43 H 0.150 0.850 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.097 0.903 48 H 0.082 0.918 49 H 0.064 0.936 50 H 0.123 0.877 51 H 0.127 0.873 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.474 -3.406 19.724 24.129 hybrid contribution 0.099 -0.890 -1.402 1.664 sum 13.573 -4.297 18.322 23.203 Atomic orbital electron populations 1.22368 0.97540 1.01158 1.00688 1.20816 0.91724 0.97216 0.84546 0.91776 1.42763 1.79065 1.08307 1.07109 1.18734 1.29436 0.93128 0.85989 0.93627 1.25052 1.05093 1.00264 0.95933 1.69851 1.57912 1.36267 1.00794 0.85673 0.77412 0.84100 0.76171 1.21013 1.23117 1.20413 1.21623 0.78970 0.96688 0.98472 0.88566 1.21975 1.01674 0.94503 0.98643 1.21516 0.94669 1.00729 0.97946 1.21800 0.96815 0.96361 1.01701 1.22693 1.01177 0.90842 0.90352 1.47863 1.06318 1.48596 1.31121 1.17467 0.84553 0.81699 0.80784 1.90988 1.66978 1.39816 1.38976 1.21922 0.94592 1.03782 0.97516 1.73232 0.90434 1.22436 1.24393 1.43170 1.06624 1.37258 1.20338 0.68974 1.21514 0.97774 0.98897 0.91735 1.20055 0.92465 1.05798 1.00284 1.19721 0.98114 0.96562 0.92928 1.21621 0.93599 0.98258 1.01532 1.21585 0.98522 0.98673 0.96378 1.20401 0.90650 1.02987 0.93665 0.92886 0.90787 0.95270 0.81264 0.94465 0.89150 0.94876 0.89642 0.90787 0.88303 0.94852 0.84998 0.90460 0.93308 0.95065 0.90318 0.91797 0.93555 0.87673 0.87318 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.77 9.07 71.98 0.65 -5.12 16 2 C 0.16 6.98 1.89 44.99 0.08 7.06 16 3 H 0.06 3.16 5.85 -7.60 -0.04 3.11 16 4 N -0.73 -37.53 3.30 -322.95 -1.06 -38.60 16 5 C -0.14 -8.76 8.59 84.03 0.72 -8.04 16 6 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 7 C -0.07 -4.83 5.50 84.86 0.47 -4.37 16 8 N -0.99 -68.68 13.97 21.65 0.30 -68.38 16 9 Si 0.93 51.65 27.74 68.60 1.90 53.55 16 10 H -0.28 -15.13 7.11 99.48 0.71 -14.42 16 11 H -0.30 -16.97 7.11 99.48 0.71 -16.26 16 12 H -0.28 -14.77 6.52 99.48 0.65 -14.13 16 13 C 0.15 4.83 2.75 44.98 0.12 4.95 16 14 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 15 C -0.13 -3.78 4.82 30.68 0.15 -3.63 16 16 C -0.11 -2.41 5.89 30.62 0.18 -2.23 16 17 C -0.13 -3.00 6.06 30.53 0.19 -2.81 16 18 C 0.07 1.91 6.31 86.22 0.54 2.45 16 19 N -0.60 -21.16 2.97 -799.35 -2.37 -23.53 16 20 C 0.57 24.46 7.12 86.75 0.62 25.07 16 21 O -0.50 -25.49 8.93 -3.93 -0.04 -25.53 16 22 C -0.02 -0.76 6.89 42.14 0.29 -0.47 16 23 N -0.27 -7.78 8.61 -48.63 -0.42 -8.20 16 24 N -0.36 -7.61 6.82 -48.24 -0.33 -7.94 16 25 H 0.46 4.98 8.96 -219.80 -1.97 3.01 16 26 C 0.03 0.74 7.12 41.54 0.30 1.04 16 27 C -0.18 -6.40 5.99 -20.03 -0.12 -6.52 16 28 C -0.03 -1.41 5.59 29.91 0.17 -1.24 16 29 C -0.11 -3.17 5.91 30.79 0.18 -2.99 16 30 C -0.11 -2.38 5.89 30.76 0.18 -2.19 16 31 C -0.04 -0.60 6.30 29.96 0.19 -0.41 16 32 H 0.05 1.83 6.91 -2.39 -0.02 1.82 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.35 18.20 3.69 -92.71 -0.34 17.86 16 36 H 0.25 16.43 8.31 -92.71 -0.77 15.66 16 37 H 0.09 2.32 6.93 -2.39 -0.02 2.31 16 38 H 0.03 1.20 6.20 -2.39 -0.01 1.19 16 39 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.13 3.62 3.69 -86.35 -0.32 3.30 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.05 2.25 7.58 -2.39 -0.02 2.24 16 46 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 48 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.05 1.19 8.12 -2.39 -0.02 1.17 16 50 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -87.17 383.01 1.13 -86.05 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -1.76 Total: 32.03 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 4.91 Total: 0.55 kcal Atomic # 7 Polarization: -142.76 SS G_CDS: -3.88 Total: -146.65 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.04 Total: -25.53 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 1.90 Total: 53.55 kcal Total: -87.17 1.13 -86.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479822086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.694 kcal (2) G-P(sol) polarization free energy of solvation -87.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds