Wall clock time and date at job start Wed Apr 1 2020 05:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46987 * 2 1 4 4 N 1.46490 * 109.47066 * 239.99930 * 2 1 3 5 5 C 1.36935 * 120.00405 * 73.54983 * 4 2 1 6 6 H 1.08006 * 119.99527 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00455 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00102 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99808 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47441 * 90.00291 * 9 7 5 11 11 H 1.48501 * 109.47369 * 209.99911 * 9 7 5 12 12 H 1.48505 * 109.47173 * 330.00027 * 9 7 5 13 13 C 1.53000 * 109.46754 * 119.99603 * 2 1 3 14 14 H 1.09005 * 109.57992 * 70.06192 * 13 2 1 15 15 C 1.53190 * 109.58784 * 309.77731 * 13 2 1 16 16 C 1.53039 * 109.31048 * 185.57734 * 15 13 2 17 17 C 1.53036 * 109.54097 * 61.36472 * 16 15 13 18 18 C 1.53192 * 109.31084 * 298.63411 * 17 16 15 19 19 N 1.46920 * 109.58657 * 190.48466 * 13 2 1 20 20 C 1.34783 * 120.62898 * 353.40090 * 19 13 2 21 21 O 1.21599 * 120.00138 * 6.41834 * 20 19 13 22 22 C 1.47432 * 119.99827 * 186.42147 * 20 19 13 23 23 C 1.41293 * 126.41588 * 35.99848 * 22 20 19 24 24 N 1.30445 * 108.02059 * 179.85309 * 23 22 20 25 25 N 1.39935 * 108.89901 * 0.41637 * 24 23 22 26 26 C 1.46495 * 125.75243 * 179.73529 * 25 24 23 27 27 C 1.53002 * 109.47421 * 304.99490 * 26 25 24 28 28 C 1.53003 * 117.49912 * 243.75254 * 27 26 25 29 29 C 1.52999 * 117.50210 * 175.08846 * 27 26 25 30 30 C 1.34258 * 108.49097 * 359.73310 * 25 24 23 31 31 H 1.08999 * 109.47599 * 300.00567 * 1 2 3 32 32 H 1.09007 * 109.47114 * 59.99955 * 1 2 3 33 33 H 1.08994 * 109.47289 * 180.02562 * 1 2 3 34 34 H 0.97006 * 120.00167 * 253.81601 * 4 2 1 35 35 H 0.97003 * 119.99801 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.49946 * 305.52620 * 15 13 2 37 37 H 1.09002 * 109.49839 * 65.62929 * 15 13 2 38 38 H 1.08996 * 109.46388 * 181.38526 * 16 15 13 39 39 H 1.09000 * 109.45965 * 301.34224 * 16 15 13 40 40 H 1.09007 * 109.50001 * 58.58343 * 17 16 15 41 41 H 1.08997 * 109.50383 * 178.68373 * 17 16 15 42 42 H 1.09007 * 109.58418 * 174.42017 * 18 17 16 43 43 H 1.08994 * 109.58901 * 294.84496 * 18 17 16 44 44 H 1.08003 * 125.98530 * 0.02562 * 23 22 20 45 45 H 1.09001 * 109.47455 * 64.99832 * 26 25 24 46 46 H 1.08999 * 109.46992 * 184.99647 * 26 25 24 47 47 H 1.09003 * 115.54767 * 29.41950 * 27 26 25 48 48 H 1.08995 * 117.50194 * 359.97438 * 28 27 26 49 49 H 1.09001 * 117.49429 * 145.01871 * 28 27 26 50 50 H 1.08993 * 117.50183 * 214.97784 * 29 27 26 51 51 H 1.08999 * 117.49679 * 359.97438 * 29 27 26 52 52 H 1.07994 * 126.29012 * 180.02562 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.9299 -0.0844 -2.4208 6 1 1.4998 0.9027 -2.5049 7 6 2.3931 -0.7386 -3.5541 8 7 2.3077 -0.1561 -4.7313 9 14 3.1376 -2.4456 -3.4085 10 1 2.0695 -3.4661 -3.5592 11 1 4.1559 -2.6340 -4.4729 12 1 3.7796 -2.5937 -2.0775 13 6 2.0399 -0.7212 1.2493 14 1 1.8315 -1.7879 1.1660 15 6 1.3405 -0.1565 2.4897 16 6 1.9532 -0.7819 3.7449 17 6 3.4388 -0.4229 3.8227 18 6 4.1620 -0.9907 2.5974 19 7 3.4873 -0.5084 1.3846 20 6 4.1830 0.1173 0.4145 21 8 3.5984 0.6147 -0.5287 22 6 5.6528 0.1988 0.4968 23 6 6.5208 -0.7947 1.0027 24 7 7.7435 -0.3511 0.9028 25 7 7.7160 0.9321 0.3454 26 6 8.8846 1.7732 0.0754 27 6 9.6998 1.9412 1.3592 28 6 9.8228 3.3520 1.9385 29 6 11.0274 2.6951 1.2596 30 6 6.4381 1.2624 0.0999 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 2.4007 -1.5789 -1.1211 35 1 2.6317 -0.6131 -5.5232 36 1 1.4721 0.9250 2.5209 37 1 0.2773 -0.3931 2.4473 38 1 1.4407 -0.4003 4.6280 39 1 1.8432 -1.8655 3.7015 40 1 3.5507 0.6612 3.8413 41 1 3.8692 -0.8491 4.7290 42 1 5.1990 -0.6546 2.5969 43 1 4.1287 -2.0798 2.6255 44 1 6.2242 -1.7543 1.3997 45 1 9.5030 1.3018 -0.6885 46 1 8.5551 2.7509 -0.2763 47 1 9.6441 1.1111 2.0635 48 1 9.3234 4.1605 1.4047 49 1 9.8485 3.4499 3.0238 50 1 11.8449 2.3614 1.8985 51 1 11.3203 3.0711 0.2793 52 1 6.0888 2.1896 -0.3298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479831155.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:04 Heat of formation + Delta-G solvation = 104.624267 kcal Electronic energy + Delta-G solvation = -32230.070041 eV Core-core repulsion = 28233.478772 eV Total energy + Delta-G solvation = -3996.591269 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.44993 -41.10601 -38.49460 -38.00897 -36.99184 -34.43311 -33.89548 -33.35387 -31.93351 -31.21383 -29.62146 -28.33109 -26.35698 -25.74085 -24.05317 -23.35540 -23.26346 -22.76964 -21.62195 -21.48467 -21.01777 -20.29046 -19.33211 -18.24955 -17.09577 -16.87150 -16.72387 -16.50041 -16.13471 -15.93551 -15.63969 -15.44364 -15.14390 -14.93047 -14.70438 -14.57401 -14.45936 -14.22616 -14.01151 -13.79721 -13.74076 -13.69280 -13.43452 -13.07311 -12.84683 -12.75011 -12.59929 -12.41442 -12.29719 -12.07287 -11.93944 -11.84024 -11.65815 -11.65227 -11.44172 -11.36546 -11.17154 -11.05649 -10.83624 -10.47426 -9.87134 -9.54343 -9.32695 -8.82271 -7.84484 -5.06752 0.67041 1.29221 1.32429 1.37554 1.38128 1.43439 2.26025 2.53029 2.58419 2.81058 3.32339 3.47256 3.68253 3.73077 3.82557 3.84122 3.94930 3.98116 4.02076 4.13351 4.16007 4.22446 4.30283 4.33381 4.41020 4.41571 4.48933 4.64795 4.65432 4.74101 4.75792 4.78928 4.83939 4.91669 4.97143 4.97350 5.06719 5.11676 5.16911 5.18038 5.21044 5.24178 5.31303 5.43135 5.47996 5.53696 5.62861 5.90007 5.93627 6.01136 6.38090 6.54880 6.75649 7.27278 7.69414 8.06253 8.24292 9.40307 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009166 B = 0.004137 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.910089 B = 6766.117196 C = 8793.877185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.181 3.819 3 H 0.046 0.954 4 N -0.722 5.722 5 C -0.148 4.148 6 H 0.043 0.957 7 C -0.084 4.084 8 N -1.002 6.002 9 Si 0.949 3.051 10 H -0.281 1.281 11 H -0.308 1.308 12 H -0.267 1.267 13 C 0.149 3.851 14 H 0.067 0.933 15 C -0.121 4.121 16 C -0.113 4.113 17 C -0.127 4.127 18 C 0.100 3.900 19 N -0.610 5.610 20 C 0.554 3.446 21 O -0.510 6.510 22 C -0.298 4.298 23 C 0.076 3.924 24 N -0.311 5.311 25 N -0.354 5.354 26 C 0.155 3.845 27 C -0.180 4.180 28 C -0.175 4.175 29 C -0.157 4.157 30 C 0.111 3.889 31 H 0.077 0.923 32 H 0.024 0.976 33 H 0.051 0.949 34 H 0.352 0.648 35 H 0.247 0.753 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.206 0.794 45 H 0.096 0.904 46 H 0.120 0.880 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.098 0.902 50 H 0.105 0.895 51 H 0.110 0.890 52 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.825 2.319 24.538 27.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 H 0.064 0.936 4 N -0.363 5.363 5 C -0.280 4.280 6 H 0.061 0.939 7 C -0.272 4.272 8 N -0.658 5.658 9 Si 0.780 3.220 10 H -0.208 1.208 11 H -0.236 1.236 12 H -0.193 1.193 13 C 0.045 3.955 14 H 0.085 0.915 15 C -0.159 4.159 16 C -0.151 4.151 17 C -0.165 4.165 18 C -0.022 4.022 19 N -0.345 5.345 20 C 0.341 3.659 21 O -0.383 6.383 22 C -0.313 4.313 23 C -0.110 4.110 24 N -0.132 5.132 25 N -0.133 5.133 26 C 0.035 3.965 27 C -0.199 4.199 28 C -0.212 4.212 29 C -0.195 4.195 30 C -0.040 4.040 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.184 0.816 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.222 0.778 45 H 0.114 0.886 46 H 0.138 0.862 47 H 0.118 0.882 48 H 0.123 0.877 49 H 0.116 0.884 50 H 0.123 0.877 51 H 0.128 0.872 52 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 13.854 2.587 24.090 27.909 hybrid contribution -0.423 -0.748 -1.137 1.425 sum 13.431 1.839 22.953 26.657 Atomic orbital electron populations 1.22423 0.97875 1.01168 1.00560 1.20568 0.91323 0.96454 0.84337 0.93614 1.42617 1.73387 1.16852 1.03433 1.18740 1.26964 0.98110 0.84231 0.93865 1.25193 1.04730 1.02105 0.95201 1.69884 1.57610 1.39861 0.98422 0.85447 0.78019 0.82093 0.76450 1.20802 1.23583 1.19294 1.21447 0.79651 0.99026 0.95345 0.91460 1.21960 1.00345 1.00367 0.93271 1.21511 0.95315 1.01203 0.97046 1.21884 0.96024 1.00997 0.97637 1.22117 0.97442 0.99368 0.83319 1.47815 1.07749 1.59418 1.19529 1.17812 0.85949 0.80000 0.82091 1.91189 1.69280 1.45170 1.32693 1.20467 0.94440 0.98694 1.17707 1.24323 0.88957 1.00019 0.97730 1.77005 1.21672 0.94186 1.20326 1.48605 1.05801 1.12498 1.46368 1.21683 0.83500 0.93988 0.97314 1.22386 1.01413 0.97216 0.98891 1.23204 1.02334 0.94441 1.01208 1.23085 0.90902 1.02042 1.03434 1.23075 0.84041 1.00288 0.96610 0.90423 0.95679 0.93022 0.81552 0.94430 0.92370 0.89314 0.90028 0.90974 0.92662 0.88568 0.89100 0.90419 0.77751 0.88621 0.86218 0.88232 0.87671 0.88361 0.87678 0.87158 0.79270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.83 8.71 71.98 0.63 -5.20 16 2 C 0.18 7.37 1.81 44.99 0.08 7.45 16 3 H 0.05 2.17 6.20 -2.39 -0.01 2.16 16 4 N -0.72 -36.61 3.08 -322.95 -0.99 -37.61 16 5 C -0.15 -9.20 8.81 84.03 0.74 -8.46 16 6 H 0.04 2.99 8.06 -2.91 -0.02 2.97 16 7 C -0.08 -5.44 5.50 84.86 0.47 -4.98 16 8 N -1.00 -69.98 13.97 21.65 0.30 -69.68 16 9 Si 0.95 51.30 27.73 68.60 1.90 53.20 16 10 H -0.28 -14.58 7.11 99.48 0.71 -13.88 16 11 H -0.31 -17.04 7.11 99.48 0.71 -16.33 16 12 H -0.27 -13.55 6.52 99.48 0.65 -12.90 16 13 C 0.15 4.52 2.58 44.98 0.12 4.64 16 14 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 15 C -0.12 -2.65 4.51 30.67 0.14 -2.51 16 16 C -0.11 -1.77 5.88 30.62 0.18 -1.59 16 17 C -0.13 -2.00 6.08 30.67 0.19 -1.82 16 18 C 0.10 2.01 5.34 86.36 0.46 2.47 16 19 N -0.61 -18.22 2.97 -798.87 -2.37 -20.59 16 20 C 0.55 20.92 7.29 86.66 0.63 21.56 16 21 O -0.51 -24.82 10.16 -4.03 -0.04 -24.86 16 22 C -0.30 -9.64 5.32 -20.15 -0.11 -9.75 16 23 C 0.08 2.09 9.59 85.65 0.82 2.91 16 24 N -0.31 -8.59 12.14 -56.27 -0.68 -9.27 16 25 N -0.35 -8.89 3.65 -346.31 -1.26 -10.15 16 26 C 0.15 2.66 6.77 86.38 0.58 3.25 16 27 C -0.18 -2.73 5.92 -10.79 -0.06 -2.79 16 28 C -0.18 -2.05 10.18 30.62 0.31 -1.74 16 29 C -0.16 -1.66 10.26 30.62 0.31 -1.35 16 30 C 0.11 3.22 11.41 84.28 0.96 4.18 16 31 H 0.08 2.21 6.45 -2.39 -0.02 2.19 16 32 H 0.02 1.05 7.99 -2.38 -0.02 1.03 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.35 17.72 5.57 -92.70 -0.52 17.21 16 35 H 0.25 16.58 8.31 -92.71 -0.77 15.81 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.74 6.69 -2.39 -0.02 1.73 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.81 4.62 -2.38 -0.01 1.80 16 43 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.21 4.47 7.05 -2.91 -0.02 4.45 16 45 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.12 1.53 7.79 -2.39 -0.02 1.51 16 47 H 0.10 1.91 7.90 -2.39 -0.02 1.89 16 48 H 0.10 1.08 8.03 -2.39 -0.02 1.06 16 49 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.19 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -85.69 400.82 3.64 -82.05 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.34 Total: 30.63 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 6.45 Total: 6.27 kcal Atomic # 7 Polarization: -142.28 SS G_CDS: -5.01 Total: -147.30 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.04 Total: -24.86 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 1.90 Total: 53.20 kcal Total: -85.69 3.64 -82.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479831155.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.674 kcal (2) G-P(sol) polarization free energy of solvation -85.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds