Wall clock time and date at job start Wed Apr 1 2020 05:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46553 * 2 1 4 4 C 1.53000 * 109.46745 * 240.00439 * 2 1 3 5 5 C 1.50702 * 109.47375 * 64.99852 * 4 2 1 6 6 O 1.21285 * 119.99964 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00309 * 179.97438 * 5 4 2 8 8 C 1.46496 * 120.00053 * 180.02562 * 7 5 4 9 9 H 1.09006 * 115.55606 * 9.41356 * 8 7 5 10 10 C 1.53028 * 117.50180 * 223.73199 * 8 7 5 11 11 C 1.52816 * 117.50171 * 155.10132 * 8 7 5 12 12 C 1.53180 * 117.71516 * 359.85679 * 11 8 7 13 13 C 1.53353 * 108.76795 * 158.88726 * 12 11 8 14 14 N 1.46841 * 108.81623 * 51.31288 * 13 12 11 15 15 C 1.36936 * 120.38542 * 123.11925 * 14 13 12 16 16 H 1.08003 * 120.00135 * 331.79383 * 15 14 13 17 17 C 1.38809 * 120.00028 * 151.79819 * 15 14 13 18 18 N 1.31620 * 119.99846 * 159.30102 * 17 15 14 19 19 Si 1.86800 * 119.99952 * 339.29973 * 17 15 14 20 20 H 1.48501 * 109.47072 * 94.25190 * 19 17 15 21 21 H 1.48499 * 109.46711 * 214.24520 * 19 17 15 22 22 H 1.48492 * 109.47214 * 334.24820 * 19 17 15 23 23 C 1.46843 * 119.23122 * 303.09873 * 14 13 12 24 24 C 1.53194 * 117.71296 * 215.09850 * 11 8 7 25 25 C 1.50693 * 109.47142 * 120.00502 * 2 1 3 26 26 C 1.39869 * 126.04555 * 60.00329 * 25 2 1 27 27 N 1.30833 * 108.20696 * 179.97438 * 26 25 2 28 28 N 1.40084 * 108.20604 * 359.97438 * 27 26 25 29 29 C 1.46494 * 126.04117 * 179.97438 * 28 27 26 30 30 C 1.34947 * 107.92225 * 359.97438 * 28 27 26 31 31 H 1.09006 * 109.46899 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47346 * 299.99049 * 1 2 3 33 33 H 1.08992 * 109.47910 * 59.99921 * 1 2 3 34 34 H 1.09001 * 109.47341 * 184.99647 * 4 2 1 35 35 H 1.09001 * 109.47544 * 305.00048 * 4 2 1 36 36 H 0.96999 * 119.99961 * 359.97438 * 7 5 4 37 37 H 1.08999 * 117.50344 * 359.97438 * 10 8 7 38 38 H 1.09007 * 117.50536 * 145.04718 * 10 8 7 39 39 H 1.08993 * 109.58899 * 278.67366 * 12 11 8 40 40 H 1.08998 * 109.58636 * 39.10677 * 12 11 8 41 41 H 1.08994 * 109.58180 * 291.50542 * 13 12 11 42 42 H 1.09003 * 109.57787 * 171.10848 * 13 12 11 43 43 H 0.97006 * 120.00139 * 180.02562 * 18 17 15 44 44 H 1.09008 * 109.57673 * 297.10564 * 23 14 13 45 45 H 1.09002 * 109.58302 * 176.70615 * 23 14 13 46 46 H 1.09000 * 109.58424 * 320.90475 * 24 11 8 47 47 H 1.08998 * 109.58261 * 81.32974 * 24 11 8 48 48 H 1.08005 * 125.89718 * 359.97438 * 26 25 2 49 49 H 1.08998 * 109.47349 * 90.01792 * 29 28 27 50 50 H 1.08999 * 109.47332 * 210.02761 * 29 28 27 51 51 H 1.09011 * 109.46950 * 330.01992 * 29 28 27 52 52 H 1.08000 * 126.12779 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0572 -2.4766 6 8 1.0108 1.0871 -2.3633 7 7 1.9851 -0.3911 -3.7002 8 6 1.5980 0.3658 -4.8932 9 1 1.1772 1.3540 -4.7071 10 6 1.0481 -0.4235 -6.0833 11 6 2.4490 0.1864 -6.1497 12 6 3.6449 -0.7675 -6.0700 13 6 4.0205 -1.2076 -7.4902 14 7 4.1703 -0.0138 -8.3319 15 6 5.3445 0.2228 -8.9956 16 1 6.2757 -0.1507 -8.5957 17 6 5.3381 0.9428 -10.1824 18 7 6.4419 1.5196 -10.6082 19 14 3.7629 1.0929 -11.1752 20 1 3.0618 2.3484 -10.8044 21 1 4.0911 1.1184 -12.6233 22 1 2.8837 -0.0686 -10.8873 23 6 3.0463 0.9232 -8.4541 24 6 2.6510 1.4067 -7.0536 25 6 2.0323 -0.7105 1.2303 26 6 1.7736 -2.0409 1.5757 27 7 2.3781 -2.2943 2.7080 28 7 3.0422 -1.1315 3.1194 29 6 3.8418 -0.9807 4.3375 30 6 2.8152 -0.1746 2.1953 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 3.1263 -0.7994 -1.2058 35 1 1.6053 -1.7197 -1.2954 36 1 2.4896 -1.2146 -3.7909 37 1 0.9748 -1.5060 -5.9788 38 1 0.2661 0.0457 -6.6805 39 1 4.4904 -0.2559 -5.6104 40 1 3.3765 -1.6409 -5.4758 41 1 3.2338 -1.8440 -7.8955 42 1 4.9613 -1.7575 -7.4654 43 1 6.4373 2.0230 -11.4374 44 1 2.1992 0.4189 -8.9191 45 1 3.3459 1.7757 -9.0638 46 1 1.7232 1.9759 -7.1117 47 1 3.4430 2.0355 -6.6469 48 1 1.1777 -2.7387 1.0061 49 1 4.8791 -1.2403 4.1258 50 1 3.7886 0.0522 4.6816 51 1 3.4526 -1.6420 5.1118 52 1 3.1905 0.8377 2.2215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479982371.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:35 Heat of formation + Delta-G solvation = 86.027832 kcal Electronic energy + Delta-G solvation = -30060.631903 eV Core-core repulsion = 26063.234232 eV Total energy + Delta-G solvation = -3997.397671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.58611 -40.11539 -38.70721 -35.95235 -35.31803 -33.19066 -33.05994 -31.74004 -30.52631 -30.01073 -28.83041 -27.80366 -26.86151 -24.20511 -23.35277 -23.01590 -21.94419 -21.41570 -21.02631 -20.43917 -19.71316 -18.38813 -17.41486 -16.91406 -16.47324 -16.14017 -15.78568 -15.51452 -15.17853 -14.73422 -14.62473 -14.31569 -14.05430 -13.80177 -13.66411 -13.61673 -13.35055 -13.08783 -12.96456 -12.92486 -12.77452 -12.60612 -12.28695 -12.13079 -11.88523 -11.75305 -11.67894 -11.39526 -11.29358 -11.07946 -10.78459 -10.67183 -10.60812 -10.29898 -9.96626 -9.90640 -9.75062 -9.73272 -9.48981 -9.42938 -8.72716 -8.67889 -8.43262 -6.93910 -5.94744 -3.30493 1.56076 2.18269 2.46604 2.57076 3.10043 3.32527 3.48986 3.52220 4.05721 4.12957 4.48511 4.53387 4.55545 4.66369 4.71463 4.82851 4.87584 4.91497 4.95546 4.96320 5.00277 5.12164 5.15098 5.31335 5.34378 5.35709 5.43617 5.45200 5.48875 5.72548 5.75434 5.85901 5.91945 5.93650 6.01878 6.05812 6.13267 6.16107 6.22996 6.32509 6.36803 6.37974 6.43965 6.54531 6.61758 6.65591 6.70643 6.71407 6.96072 7.36851 7.48090 7.98455 8.20981 8.33669 8.95866 9.73044 10.11275 11.21234 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.001883 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.559307 B =14864.064791 C =15481.398569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.007 3.993 3 H 0.082 0.918 4 C -0.132 4.132 5 C 0.516 3.484 6 O -0.540 6.540 7 N -0.698 5.698 8 C 0.076 3.924 9 H 0.133 0.867 10 C -0.185 4.185 11 C -0.103 4.103 12 C -0.098 4.098 13 C 0.153 3.847 14 N -0.604 5.604 15 C -0.261 4.261 16 H 0.084 0.916 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.883 3.117 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.270 1.270 23 C 0.132 3.868 24 C -0.098 4.098 25 C -0.228 4.228 26 C 0.055 3.945 27 N -0.300 5.300 28 N -0.379 5.379 29 C 0.102 3.898 30 C 0.057 3.943 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.401 0.599 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.050 0.950 41 H 0.023 0.977 42 H 0.063 0.937 43 H 0.262 0.738 44 H 0.026 0.974 45 H 0.072 0.928 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.181 0.819 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 -5.644 26.826 29.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.013 4.013 3 H 0.101 0.899 4 C -0.173 4.173 5 C 0.303 3.697 6 O -0.417 6.417 7 N -0.348 5.348 8 C -0.030 4.030 9 H 0.150 0.850 10 C -0.224 4.224 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.027 3.973 14 N -0.327 5.327 15 C -0.389 4.389 16 H 0.102 0.898 17 C -0.176 4.176 18 N -0.551 5.551 19 Si 0.713 3.287 20 H -0.217 1.217 21 H -0.232 1.232 22 H -0.195 1.195 23 C 0.006 3.994 24 C -0.138 4.138 25 C -0.240 4.240 26 C -0.131 4.131 27 N -0.121 5.121 28 N -0.161 5.161 29 C -0.040 4.040 30 C -0.089 4.089 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.236 0.764 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.090 0.910 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.198 0.802 49 H 0.093 0.907 50 H 0.105 0.895 51 H 0.106 0.894 52 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -9.833 -5.690 27.844 30.073 hybrid contribution -0.671 0.314 -1.321 1.515 sum -10.504 -5.377 26.523 29.029 Atomic orbital electron populations 1.21929 0.94151 1.01468 1.02888 1.19103 0.95982 0.98182 0.88063 0.89944 1.21747 1.03098 1.00163 0.92248 1.20689 0.78898 0.85705 0.84426 1.90658 1.39880 1.24626 1.86544 1.45466 1.56951 1.27269 1.05115 1.21833 1.03827 0.97066 0.80269 0.84981 1.23571 0.97735 0.99792 1.01282 1.21926 0.92030 0.99308 0.97137 1.21609 0.95982 0.96420 0.99682 1.20861 0.98971 0.88923 0.88587 1.44268 1.12951 1.20931 1.54561 1.18923 0.85032 1.33083 1.01853 0.89828 1.25301 0.96347 0.98812 0.97139 1.69843 1.27469 1.34449 1.23349 0.86932 0.84542 0.77956 0.79250 1.21655 1.23206 1.19512 1.21285 0.90368 0.93692 0.94061 1.21685 1.00581 0.94607 0.96915 1.20080 1.07930 0.95326 1.00634 1.23738 0.99181 0.96118 0.94106 1.77356 1.13387 1.06057 1.15276 1.48446 1.40196 1.08384 1.19107 1.21849 0.94639 1.03551 0.83919 1.22379 1.00037 0.95744 0.90732 0.93344 0.93058 0.90450 0.88853 0.88908 0.76414 0.88898 0.88434 0.91319 0.93185 0.95886 0.91807 0.92800 0.95589 0.90996 0.92579 0.91147 0.80249 0.90720 0.89489 0.89373 0.80965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.82 37.16 0.33 -1.01 16 2 C 0.01 0.06 2.40 -91.77 -0.22 -0.16 16 3 H 0.08 0.79 7.92 -51.93 -0.41 0.37 16 4 C -0.13 -1.07 5.03 -27.88 -0.14 -1.21 16 5 C 0.52 5.86 7.55 -10.99 -0.08 5.78 16 6 O -0.54 -7.94 13.53 5.55 0.08 -7.87 16 7 N -0.70 -7.72 5.35 -53.88 -0.29 -8.01 16 8 C 0.08 1.00 6.13 -68.01 -0.42 0.58 16 9 H 0.13 1.92 7.40 -51.93 -0.38 1.54 16 10 C -0.19 -2.39 9.87 -26.75 -0.26 -2.66 16 11 C -0.10 -1.54 1.94 -154.44 -0.30 -1.84 16 12 C -0.10 -1.48 5.37 -26.46 -0.14 -1.62 16 13 C 0.15 2.87 6.52 -3.67 -0.02 2.85 16 14 N -0.60 -14.03 2.71 -172.26 -0.47 -14.50 16 15 C -0.26 -7.20 10.00 -15.06 -0.15 -7.35 16 16 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 17 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 18 N -0.91 -27.74 13.97 55.49 0.78 -26.97 16 19 Si 0.88 22.30 24.40 -169.99 -4.15 18.16 16 20 H -0.29 -7.05 6.66 56.52 0.38 -6.68 16 21 H -0.30 -7.83 7.11 56.52 0.40 -7.42 16 22 H -0.27 -6.70 6.65 56.52 0.38 -6.32 16 23 C 0.13 2.83 4.23 -3.68 -0.02 2.81 16 24 C -0.10 -1.73 5.83 -26.45 -0.15 -1.88 16 25 C -0.23 -1.91 4.80 -105.06 -0.50 -2.42 16 26 C 0.05 0.48 11.54 -17.37 -0.20 0.28 16 27 N -0.30 -3.08 12.58 30.62 0.39 -2.69 16 28 N -0.38 -3.09 4.01 -68.16 -0.27 -3.36 16 29 C 0.10 0.42 11.47 59.84 0.69 1.10 16 30 C 0.06 0.43 11.38 -17.22 -0.20 0.24 16 31 H 0.05 0.39 8.02 -51.93 -0.42 -0.03 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.87 5.95 -51.93 -0.31 0.56 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.40 3.63 7.11 -40.82 -0.29 3.34 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.60 6.75 -51.93 -0.35 0.25 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.20 7.92 -51.93 -0.41 0.79 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.03 0.55 7.27 -51.92 -0.38 0.18 16 45 H 0.07 1.71 4.31 -51.93 -0.22 1.49 16 46 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 47 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 48 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16 49 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.09 0.16 8.14 -51.93 -0.42 -0.27 16 51 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 52 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 407.88 15.07 6.15 6.15 Total: -1.00 -34.65 407.88 -8.38 -43.03 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.70 Total: 1.98 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.89 Total: -5.93 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.13 Total: -55.52 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.08 Total: -7.87 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.15 Total: 18.16 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.65 -8.38 -43.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479982371.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.060 kcal (2) G-P(sol) polarization free energy of solvation -34.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds