Wall clock time and date at job start Wed Apr 1 2020 04:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47038 * 2 1 4 4 N 1.46497 * 109.47590 * 239.99719 * 2 1 3 5 5 C 1.36930 * 120.00150 * 84.99789 * 4 2 1 6 6 H 1.08001 * 119.99841 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00107 * 179.97438 * 5 4 2 8 8 N 1.31625 * 120.00186 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00058 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47244 * 270.00315 * 9 7 5 11 11 H 1.48498 * 109.46824 * 30.00811 * 9 7 5 12 12 H 1.48501 * 109.47046 * 150.00178 * 9 7 5 13 13 C 1.53004 * 109.46780 * 119.99518 * 2 1 3 14 14 C 1.53038 * 109.46009 * 60.02909 * 13 2 1 15 15 C 1.53190 * 109.31430 * 178.59752 * 14 13 2 16 16 N 1.46930 * 108.76230 * 54.65930 * 15 14 13 17 17 C 1.34777 * 120.63100 * 126.36162 * 16 15 14 18 18 O 1.21280 * 119.99603 * 175.33407 * 17 16 15 19 19 C 1.50699 * 119.99984 * 355.33768 * 17 16 15 20 20 H 1.08994 * 109.43264 * 35.24731 * 19 17 16 21 21 C 1.53112 * 109.43149 * 275.34080 * 19 17 16 22 22 C 1.53492 * 109.31276 * 170.02727 * 21 19 17 23 23 C 1.50710 * 108.06116 * 48.69372 * 22 21 19 24 24 C 1.33857 * 128.68174 * 164.27000 * 23 22 21 25 25 N 1.34424 * 107.80162 * 180.02562 * 24 23 22 26 26 C 1.30788 * 109.31828 * 359.97438 * 25 24 23 27 27 N 1.34404 * 108.55162 * 359.94352 * 26 25 24 28 28 C 1.46479 * 128.44043 * 180.17950 * 27 26 25 29 29 C 1.46928 * 118.73833 * 306.37838 * 16 15 14 30 30 C 1.53039 * 109.46019 * 299.97482 * 13 2 1 31 31 H 1.09000 * 109.47038 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47385 * 300.00592 * 1 2 3 33 33 H 1.09001 * 109.46995 * 60.00668 * 1 2 3 34 34 H 0.97005 * 119.99513 * 265.00786 * 4 2 1 35 35 H 0.96997 * 119.99742 * 0.02562 * 8 7 5 36 36 H 1.08998 * 109.45792 * 179.97438 * 13 2 1 37 37 H 1.08994 * 109.49941 * 298.56862 * 14 13 2 38 38 H 1.09008 * 109.49690 * 58.66236 * 14 13 2 39 39 H 1.08998 * 109.60294 * 294.86857 * 15 14 13 40 40 H 1.09002 * 109.70305 * 174.50478 * 15 14 13 41 41 H 1.09001 * 109.49648 * 289.97415 * 21 19 17 42 42 H 1.08999 * 109.49862 * 50.07075 * 21 19 17 43 43 H 1.09001 * 109.74502 * 168.33960 * 22 21 19 44 44 H 1.09005 * 109.74365 * 289.05644 * 22 21 19 45 45 H 1.08011 * 126.10112 * 0.06713 * 24 23 22 46 46 H 1.07998 * 125.72485 * 179.97438 * 26 25 24 47 47 H 1.08994 * 109.59554 * 42.86804 * 28 27 26 48 48 H 1.09000 * 109.60183 * 282.38662 * 28 27 26 49 49 H 1.09002 * 109.58675 * 293.82862 * 29 16 15 50 50 H 1.08996 * 109.58571 * 173.39619 * 29 16 15 51 51 H 1.08998 * 109.49958 * 301.33404 * 30 13 2 52 52 H 1.08994 * 109.49891 * 61.40665 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0076 -2.3756 6 1 1.8926 1.0403 -2.4241 7 6 2.6125 -0.6619 -3.5088 8 7 2.9256 -1.9390 -3.4496 9 14 2.7916 0.2701 -5.1178 10 1 1.5243 0.1789 -5.8864 11 1 3.0965 1.6952 -4.8330 12 1 3.8966 -0.3231 -5.9130 13 6 2.0399 -0.7212 1.2494 14 6 1.5302 -2.1642 1.2488 15 6 2.0712 -2.8931 2.4828 16 7 1.7083 -2.1257 3.6820 17 6 1.0548 -2.7151 4.7028 18 8 0.8355 -2.0945 5.7214 19 6 0.5967 -4.1454 4.5784 20 1 1.3261 -4.7107 3.9985 21 6 -0.7597 -4.1860 3.8692 22 6 -1.1071 -5.6400 3.5209 23 6 -0.8936 -6.4797 4.7540 24 6 -1.3296 -7.7196 5.0076 25 7 -0.8979 -8.0644 6.2331 26 6 -0.2089 -7.0765 6.7430 27 7 -0.1810 -6.0702 5.8524 28 6 0.4704 -4.7639 5.9745 29 6 2.0709 -0.7033 3.7471 30 6 1.5301 0.0009 2.4987 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 2.2490 -1.6319 -1.1524 35 1 2.8323 -2.4230 -2.6142 36 1 3.1299 -0.7215 1.2490 37 1 0.4405 -2.1651 1.2741 38 1 1.8740 -2.6712 0.3472 39 1 3.1562 -2.9724 2.4142 40 1 1.6350 -3.8903 2.5412 41 1 -1.5265 -3.7764 4.5268 42 1 -0.7101 -3.5947 2.9550 43 1 -2.1490 -5.7046 3.2072 44 1 -0.4579 -5.9917 2.7190 45 1 -1.9220 -8.3338 4.3455 46 1 0.2594 -7.0705 7.7161 47 1 1.4613 -4.8889 6.4110 48 1 -0.1316 -4.1129 6.6084 49 1 3.1558 -0.6041 3.7815 50 1 1.6323 -0.2549 4.6385 51 1 1.8739 1.0352 2.4868 52 1 0.4404 -0.0202 2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481332323.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:11 Heat of formation + Delta-G solvation = 12.562378 kcal Electronic energy + Delta-G solvation = -31484.923883 eV Core-core repulsion = 27484.340511 eV Total energy + Delta-G solvation = -4000.583372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.34679 -41.58121 -39.58065 -37.37496 -37.04645 -34.93246 -34.00850 -32.77300 -31.96684 -31.45469 -29.70620 -28.85496 -26.92384 -26.01861 -25.20810 -24.39692 -23.82490 -22.76628 -22.36305 -20.97890 -20.11637 -19.54934 -19.39049 -18.62655 -17.86115 -17.13761 -16.93032 -16.51365 -16.35519 -15.91502 -15.72608 -15.43199 -15.23821 -15.14392 -15.10289 -14.93708 -14.67851 -14.51107 -14.28156 -14.19438 -14.04483 -13.57533 -13.29583 -13.05448 -13.00304 -12.94306 -12.84424 -12.62799 -12.48862 -12.20072 -12.04584 -11.95166 -11.86015 -11.75449 -11.43136 -11.37239 -11.06658 -10.95284 -10.89922 -10.81339 -10.49650 -9.75606 -9.30196 -9.05440 -8.33713 -5.26457 1.09589 1.39106 1.59168 1.61393 1.68537 1.82607 2.02395 2.17640 2.72544 3.21333 3.24772 3.43784 3.49780 3.65534 3.68600 3.74412 3.83428 3.89909 3.91142 4.02678 4.12537 4.16417 4.22642 4.29123 4.33485 4.33675 4.42819 4.47763 4.56423 4.61308 4.65817 4.71986 4.74637 4.81172 4.85670 4.88871 4.92271 4.94217 5.03335 5.05466 5.07130 5.17577 5.28034 5.34905 5.40216 5.49664 5.64429 5.65956 5.78330 6.24805 6.27533 6.56821 6.97461 7.09556 7.17086 8.08588 8.18463 9.18801 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015893 B = 0.002426 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.327137 B =11538.375395 C =12690.138167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.177 3.823 3 H 0.032 0.968 4 N -0.746 5.746 5 C -0.324 4.324 6 H 0.060 0.940 7 C -0.104 4.104 8 N -0.977 5.977 9 Si 1.123 2.877 10 H -0.288 1.288 11 H -0.277 1.277 12 H -0.294 1.294 13 C -0.081 4.081 14 C -0.122 4.122 15 C 0.108 3.892 16 N -0.600 5.600 17 C 0.529 3.471 18 O -0.574 6.574 19 C -0.115 4.115 20 H 0.120 0.880 21 C -0.109 4.109 22 C -0.040 4.040 23 C -0.027 4.027 24 C -0.048 4.048 25 N -0.535 5.535 26 C 0.181 3.819 27 N -0.455 5.455 28 C 0.124 3.876 29 C 0.115 3.885 30 C -0.118 4.118 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.363 0.637 35 H 0.246 0.754 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.179 0.821 46 H 0.232 0.768 47 H 0.110 0.890 48 H 0.093 0.907 49 H 0.076 0.924 50 H 0.087 0.913 51 H 0.082 0.918 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.134 -4.690 19.776 20.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 H 0.050 0.950 4 N -0.389 5.389 5 C -0.455 4.455 6 H 0.078 0.922 7 C -0.296 4.296 8 N -0.626 5.626 9 Si 0.950 3.050 10 H -0.215 1.215 11 H -0.202 1.202 12 H -0.221 1.221 13 C -0.100 4.100 14 C -0.160 4.160 15 C -0.014 4.014 16 N -0.331 5.331 17 C 0.317 3.683 18 O -0.454 6.454 19 C -0.137 4.137 20 H 0.137 0.863 21 C -0.147 4.147 22 C -0.078 4.078 23 C -0.142 4.142 24 C -0.195 4.195 25 N -0.254 5.254 26 C -0.102 4.102 27 N -0.139 5.139 28 C 0.002 3.998 29 C -0.007 4.007 30 C -0.156 4.156 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.196 0.804 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.118 0.882 45 H 0.196 0.804 46 H 0.248 0.752 47 H 0.128 0.872 48 H 0.111 0.889 49 H 0.094 0.906 50 H 0.105 0.895 51 H 0.101 0.899 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.909 -4.838 19.135 20.338 hybrid contribution -0.143 0.633 0.959 1.159 sum -5.052 -4.205 20.094 21.142 Atomic orbital electron populations 1.22356 0.98044 1.00959 1.00097 1.20351 0.92591 0.94521 0.85687 0.94989 1.42662 1.79596 1.09811 1.06864 1.20348 1.39608 0.95075 0.90510 0.92244 1.26961 1.00076 0.97719 1.04797 1.70965 1.54057 1.09373 1.28158 0.82649 0.76412 0.73755 0.72213 1.21479 1.20227 1.22087 1.21253 0.99654 0.95325 0.93816 1.21877 1.01450 0.95326 0.97349 1.21960 1.01154 0.95534 0.82750 1.48142 1.56065 1.11207 1.17698 1.20416 0.76717 0.88763 0.82431 1.90695 1.57910 1.66619 1.30189 1.21563 1.01119 0.93129 0.97850 0.86262 1.21589 0.93860 0.97899 1.01372 1.20303 1.04526 0.90871 0.92061 1.21508 1.02547 0.97539 0.92567 1.22158 1.06684 0.95288 0.95355 1.70477 1.15647 1.28812 1.10476 1.25376 1.02860 0.83520 0.98396 1.45499 1.39671 1.14326 1.14359 1.21772 0.99872 0.80970 0.97233 1.21633 1.00483 0.79842 0.98777 1.21914 1.01406 0.99673 0.92633 0.93183 0.91280 0.95621 0.80357 0.94347 0.92138 0.90874 0.92049 0.90341 0.87413 0.91426 0.89128 0.87670 0.88237 0.80394 0.75197 0.87203 0.88911 0.90552 0.89452 0.89917 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 8.79 71.98 0.63 -4.36 16 2 C 0.18 6.26 2.72 44.99 0.12 6.38 16 3 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 4 N -0.75 -34.58 5.04 -322.96 -1.63 -36.20 16 5 C -0.32 -17.46 9.93 84.03 0.83 -16.62 16 6 H 0.06 3.19 7.83 -2.91 -0.02 3.17 16 7 C -0.10 -5.85 5.50 84.86 0.47 -5.38 16 8 N -0.98 -58.80 13.70 21.65 0.30 -58.51 16 9 Si 1.12 51.01 29.92 68.60 2.05 53.06 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 13 C -0.08 -2.14 2.14 -10.77 -0.02 -2.16 16 14 C -0.12 -2.80 4.81 30.67 0.15 -2.65 16 15 C 0.11 1.80 6.27 86.36 0.54 2.34 16 16 N -0.60 -10.83 2.97 -818.88 -2.43 -13.26 16 17 C 0.53 9.96 6.78 87.66 0.59 10.56 16 18 O -0.57 -14.54 15.34 -3.03 -0.05 -14.58 16 19 C -0.12 -1.58 1.68 -11.43 -0.02 -1.60 16 20 H 0.12 1.34 6.25 -2.39 -0.01 1.32 16 21 C -0.11 -1.43 5.09 30.80 0.16 -1.27 16 22 C -0.04 -0.48 6.31 30.02 0.19 -0.29 16 23 C -0.03 -0.47 6.57 40.73 0.27 -0.20 16 24 C -0.05 -1.00 11.84 83.30 0.99 -0.01 16 25 N -0.54 -12.59 11.27 -200.97 -2.26 -14.86 16 26 C 0.18 3.24 12.66 180.38 2.28 5.52 16 27 N -0.46 -7.56 3.13 -514.98 -1.61 -9.17 16 28 C 0.12 1.72 6.00 86.46 0.52 2.24 16 29 C 0.11 2.19 6.42 86.37 0.55 2.74 16 30 C -0.12 -2.45 4.97 30.67 0.15 -2.29 16 31 H 0.05 1.57 6.46 -2.39 -0.02 1.55 16 32 H 0.07 1.79 6.46 -2.39 -0.02 1.78 16 33 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.36 17.19 4.87 -92.70 -0.45 16.74 16 35 H 0.25 14.52 6.77 -92.71 -0.63 13.89 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.64 6.51 -2.39 -0.02 1.63 16 38 H 0.06 1.71 6.46 -2.38 -0.02 1.70 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.11 1.31 5.36 -2.39 -0.01 1.30 16 41 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 42 H 0.09 1.14 8.11 -2.39 -0.02 1.13 16 43 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.18 3.00 8.06 -2.90 -0.02 2.98 16 46 H 0.23 2.39 8.06 -2.91 -0.02 2.37 16 47 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.09 1.49 7.54 -2.39 -0.02 1.47 16 49 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 50 H 0.09 1.78 7.03 -2.39 -0.02 1.77 16 51 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 52 H 0.07 1.49 6.51 -2.39 -0.02 1.48 16 Total: -1.00 -72.97 394.78 3.39 -69.58 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.62 Total: 31.00 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 8.41 Total: -7.06 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -7.64 Total: -132.00 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.05 Total: -14.58 kcal Atomic # 14 Polarization: 51.01 SS G_CDS: 2.05 Total: 53.06 kcal Total: -72.97 3.39 -69.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481332323.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.144 kcal (2) G-P(sol) polarization free energy of solvation -72.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds