Wall clock time and date at job start Wed Apr 1 2020 04:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47598 * 2 1 4 4 N 1.46498 * 109.46994 * 120.00158 * 2 1 3 5 5 C 1.36939 * 119.99978 * 275.00110 * 4 2 1 6 6 H 1.07995 * 119.99848 * 359.97438 * 5 4 2 7 7 C 1.38819 * 119.99897 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99706 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00142 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47312 * 90.00124 * 9 7 5 11 11 H 1.48499 * 109.47294 * 210.00283 * 9 7 5 12 12 H 1.48501 * 109.47102 * 330.00212 * 9 7 5 13 13 C 1.53002 * 109.47049 * 239.99663 * 2 1 3 14 14 C 1.53045 * 109.45635 * 65.00404 * 13 2 1 15 15 C 1.53191 * 109.31174 * 178.61251 * 14 13 2 16 16 N 1.46928 * 108.89342 * 54.56199 * 15 14 13 17 17 C 1.34777 * 120.63387 * 126.46420 * 16 15 14 18 18 O 1.21294 * 119.99180 * 355.60035 * 17 16 15 19 19 C 1.50690 * 120.00536 * 175.59973 * 17 16 15 20 20 H 1.08994 * 109.43445 * 37.87723 * 19 17 16 21 21 C 1.53110 * 109.43595 * 157.78768 * 19 17 16 22 22 C 1.53493 * 109.31202 * 189.98048 * 21 19 17 23 23 C 1.50713 * 108.05614 * 311.29639 * 22 21 19 24 24 C 1.33860 * 128.67999 * 195.74421 * 23 22 21 25 25 N 1.34421 * 107.80025 * 179.90195 * 24 23 22 26 26 C 1.30788 * 109.32116 * 0.02562 * 25 24 23 27 27 N 1.34410 * 108.55234 * 0.06152 * 26 25 24 28 28 C 1.46447 * 128.46453 * 179.86845 * 27 26 25 29 29 C 1.46967 * 118.71662 * 306.64521 * 16 15 14 30 30 C 1.53039 * 109.46017 * 304.93665 * 13 2 1 31 31 H 1.09004 * 109.47486 * 300.00216 * 1 2 3 32 32 H 1.09005 * 109.47355 * 59.99571 * 1 2 3 33 33 H 1.08994 * 109.47598 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.99976 * 94.99641 * 4 2 1 35 35 H 0.97002 * 120.00040 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.45961 * 184.97631 * 13 2 1 37 37 H 1.09001 * 109.49579 * 58.66375 * 14 13 2 38 38 H 1.09001 * 109.52262 * 298.57895 * 14 13 2 39 39 H 1.08994 * 109.58912 * 174.42264 * 15 14 13 40 40 H 1.09002 * 109.58794 * 294.71200 * 15 14 13 41 41 H 1.08999 * 109.49614 * 309.93127 * 21 19 17 42 42 H 1.09002 * 109.50235 * 70.02920 * 21 19 17 43 43 H 1.09004 * 109.74398 * 70.93001 * 22 21 19 44 44 H 1.08998 * 109.75004 * 191.59972 * 22 21 19 45 45 H 1.08008 * 126.09904 * 359.86550 * 24 23 22 46 46 H 1.07998 * 125.72421 * 180.02562 * 26 25 24 47 47 H 1.08993 * 109.63641 * 77.57441 * 28 27 26 48 48 H 1.09007 * 109.55431 * 317.11104 * 28 27 26 49 49 H 1.08998 * 109.46342 * 293.56826 * 29 16 15 50 50 H 1.08996 * 109.70973 * 173.28514 * 29 16 15 51 51 H 1.08996 * 109.49894 * 301.33423 * 30 13 2 52 52 H 1.08994 * 109.50082 * 61.43580 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1490 -0.0075 2.3758 6 1 1.8925 1.0404 2.4242 7 6 2.6122 -0.6618 3.5091 8 7 2.7383 -0.0051 4.6427 9 14 3.0565 -2.4743 3.4252 10 1 4.4891 -2.6164 3.0608 11 1 2.8174 -3.1043 4.7484 12 1 2.2161 -3.1429 2.3995 13 6 2.0400 -0.7213 -1.2492 14 6 1.6350 0.0693 -2.4955 15 6 2.1769 -0.6373 -3.7420 16 7 1.7158 -2.0323 -3.7363 17 6 1.0686 -2.5461 -4.8011 18 8 0.7913 -1.8344 -5.7433 19 6 0.6897 -4.0044 -4.8210 20 1 0.3771 -4.3115 -3.8231 21 6 -0.4642 -4.2176 -5.8045 22 6 -1.0128 -5.6419 -5.6424 23 6 0.1537 -6.5961 -5.6553 24 6 0.1470 -7.9233 -5.8297 25 7 1.4193 -8.3525 -5.7660 26 6 2.2103 -7.3321 -5.5574 27 7 1.4611 -6.2189 -5.4806 28 6 1.8991 -4.8398 -5.2550 29 6 1.9704 -2.8553 -2.5456 30 6 1.4308 -2.1238 -1.3125 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 2.2489 -1.6318 1.1526 35 1 3.0617 -0.4624 5.4347 36 1 3.1263 -0.7991 -1.2056 37 1 2.0498 1.0757 -2.4385 38 1 0.5480 0.1265 -2.5533 39 1 1.8087 -0.1344 -4.6362 40 1 3.2665 -0.6127 -3.7313 41 1 -1.2558 -3.4972 -5.5983 42 1 -0.1035 -4.0806 -6.8239 43 1 -1.5463 -5.7255 -4.6955 44 1 -1.6876 -5.8728 -6.4666 45 1 -0.7251 -8.5395 -5.9919 46 1 3.2852 -7.3766 -5.4623 47 1 2.3128 -4.4314 -6.1769 48 1 2.6571 -4.8212 -4.4718 49 1 3.0432 -3.0137 -2.4362 50 1 1.4678 -3.8169 -2.6491 51 1 1.7003 -2.6784 -0.4137 52 1 0.3458 -2.0465 -1.3813 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481332324.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:23 Heat of formation + Delta-G solvation = 35.083357 kcal Electronic energy + Delta-G solvation = -31416.110090 eV Core-core repulsion = 27416.503301 eV Total energy + Delta-G solvation = -3999.606789 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.71287 -40.73508 -38.53961 -36.62848 -35.72424 -33.46088 -33.09278 -31.83699 -30.92452 -30.70242 -28.80199 -28.18092 -25.88922 -25.03841 -23.94577 -23.44302 -22.85845 -21.76653 -21.33199 -19.98830 -19.31922 -18.80281 -17.93048 -17.55309 -17.32510 -16.29849 -15.98186 -15.65916 -14.95767 -14.77256 -14.74066 -14.50364 -14.40269 -14.26537 -14.12269 -14.04739 -13.57169 -13.49916 -13.38967 -13.18794 -12.78295 -12.53322 -12.48058 -12.26643 -12.09200 -11.85784 -11.69233 -11.54274 -11.42836 -11.37464 -10.99534 -10.81174 -10.54164 -10.43849 -10.27994 -10.18840 -10.07913 -9.88986 -9.85490 -9.62112 -9.00963 -8.89409 -8.65518 -7.33106 -5.82325 -3.17813 1.71551 2.05658 2.39089 2.66723 2.87187 3.28988 3.31317 3.39189 3.85964 3.91249 4.00438 4.28674 4.40248 4.44162 4.52437 4.61972 4.65941 4.67721 4.78054 4.81333 4.89417 4.92882 4.99773 5.10448 5.13239 5.21718 5.33534 5.35899 5.39203 5.42389 5.52336 5.56124 5.58040 5.68744 5.73625 5.74595 5.86942 5.95467 6.01493 6.03634 6.11475 6.20578 6.30567 6.41650 6.42984 6.50604 6.73877 6.84728 6.97816 7.05385 7.75677 7.77372 7.94480 8.36883 9.15369 9.87727 10.07320 11.36261 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.002708 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.338652 B =10335.768963 C =11704.670901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.183 3.817 3 H 0.056 0.944 4 N -0.748 5.748 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.279 1.279 13 C -0.094 4.094 14 C -0.127 4.127 15 C 0.111 3.889 16 N -0.603 5.603 17 C 0.524 3.476 18 O -0.536 6.536 19 C -0.123 4.123 20 H 0.107 0.893 21 C -0.104 4.104 22 C -0.047 4.047 23 C -0.024 4.024 24 C -0.024 4.024 25 N -0.495 5.495 26 C 0.186 3.814 27 N -0.455 5.455 28 C 0.118 3.882 29 C 0.100 3.900 30 C -0.132 4.132 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.359 0.641 35 H 0.259 0.741 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.169 0.831 46 H 0.205 0.795 47 H 0.092 0.908 48 H 0.098 0.902 49 H 0.073 0.927 50 H 0.081 0.919 51 H 0.079 0.921 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 -9.723 -23.301 25.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.074 3.926 3 H 0.074 0.926 4 N -0.392 5.392 5 C -0.372 4.372 6 H 0.107 0.893 7 C -0.192 4.192 8 N -0.582 5.582 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.205 1.205 13 C -0.113 4.113 14 C -0.166 4.166 15 C -0.011 4.011 16 N -0.336 5.336 17 C 0.310 3.690 18 O -0.412 6.412 19 C -0.144 4.144 20 H 0.125 0.875 21 C -0.143 4.143 22 C -0.085 4.085 23 C -0.138 4.138 24 C -0.171 4.171 25 N -0.213 5.213 26 C -0.096 4.096 27 N -0.139 5.139 28 C -0.005 4.005 29 C -0.023 4.023 30 C -0.170 4.170 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.192 0.808 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.186 0.814 46 H 0.222 0.778 47 H 0.110 0.890 48 H 0.116 0.884 49 H 0.091 0.909 50 H 0.099 0.901 51 H 0.097 0.903 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.678 -9.836 -23.662 25.888 hybrid contribution 0.240 -0.509 0.517 0.764 sum -3.438 -10.346 -23.145 25.584 Atomic orbital electron populations 1.22507 0.99098 1.00810 1.00338 1.20163 0.91925 0.95526 0.84967 0.92633 1.42818 1.79854 1.09291 1.07212 1.19076 1.36779 0.95526 0.85774 0.89254 1.24676 1.01556 0.97404 0.95590 1.69695 1.52669 1.35555 1.00293 0.86578 0.78349 0.86852 0.76832 1.21113 1.21749 1.20494 1.21454 1.00498 0.94298 0.95097 1.21982 1.01893 0.99278 0.93417 1.21693 0.98913 0.80570 0.99919 1.48192 1.56565 1.13198 1.15666 1.20122 0.77545 0.88976 0.82358 1.90716 1.53783 1.61115 1.35610 1.21654 0.96853 0.92835 1.03106 0.87524 1.21506 0.96779 0.96621 0.99348 1.20270 0.93327 0.91209 1.03679 1.21200 0.85663 0.96180 1.10779 1.21846 0.95420 0.91694 1.08139 1.70516 1.01716 1.29415 1.19694 1.24833 0.99023 0.80218 1.05552 1.45352 1.07162 1.07942 1.53461 1.21778 0.96608 0.78797 1.03322 1.21975 1.01362 0.93999 0.84917 1.22031 1.01446 0.96818 0.96664 0.92591 0.94146 0.93465 0.80760 0.93053 0.90785 0.90355 0.91091 0.89065 0.91304 0.89749 0.90370 0.89711 0.88917 0.81353 0.77845 0.88995 0.88379 0.90876 0.90065 0.90254 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 8.76 37.16 0.33 -2.38 16 2 C 0.18 3.14 2.67 -67.93 -0.18 2.96 16 3 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 4 N -0.75 -16.31 4.86 -53.43 -0.26 -16.57 16 5 C -0.24 -6.51 10.41 -15.06 -0.16 -6.67 16 6 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 7 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 8 N -0.93 -28.73 13.97 55.49 0.78 -27.96 16 9 Si 0.88 21.25 27.74 -169.99 -4.71 16.53 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 13 C -0.09 -1.21 2.08 -90.57 -0.19 -1.40 16 14 C -0.13 -1.37 5.08 -26.61 -0.14 -1.51 16 15 C 0.11 1.09 6.43 -3.71 -0.02 1.06 16 16 N -0.60 -5.68 2.98 -172.74 -0.51 -6.19 16 17 C 0.52 5.20 6.80 -10.99 -0.07 5.13 16 18 O -0.54 -7.08 15.63 5.55 0.09 -7.00 16 19 C -0.12 -0.92 1.69 -91.59 -0.16 -1.07 16 20 H 0.11 0.74 6.18 -51.93 -0.32 0.42 16 21 C -0.10 -0.77 4.62 -26.42 -0.12 -0.90 16 22 C -0.05 -0.30 6.31 -27.62 -0.17 -0.48 16 23 C -0.02 -0.21 6.57 -81.73 -0.54 -0.75 16 24 C -0.02 -0.24 11.84 -17.96 -0.21 -0.45 16 25 N -0.50 -5.71 11.27 -14.87 -0.17 -5.88 16 26 C 0.19 1.67 12.66 -90.71 -1.15 0.52 16 27 N -0.46 -3.78 3.13 -114.12 -0.36 -4.14 16 28 C 0.12 0.78 6.24 -3.94 -0.02 0.76 16 29 C 0.10 0.86 6.00 -3.69 -0.02 0.84 16 30 C -0.13 -1.52 4.72 -26.61 -0.13 -1.64 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.04 0.55 6.60 -51.93 -0.34 0.21 16 33 H 0.05 0.74 6.38 -51.93 -0.33 0.41 16 34 H 0.36 7.61 4.21 -40.82 -0.17 7.44 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.81 6.64 -51.93 -0.34 0.46 16 39 H 0.09 0.97 7.00 -51.93 -0.36 0.60 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 42 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 46 H 0.20 1.14 8.06 -52.49 -0.42 0.71 16 47 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 48 H 0.10 0.50 7.85 -51.93 -0.41 0.10 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.08 0.57 5.42 -51.93 -0.28 0.29 16 51 H 0.08 1.04 6.74 -51.93 -0.35 0.69 16 52 H 0.07 0.87 6.43 -51.93 -0.33 0.54 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -34.10 394.04 -10.59 -44.69 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.33 Total: 6.53 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -3.05 Total: -5.97 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: -0.52 Total: -60.73 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.09 Total: -7.00 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.53 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.10 -10.59 -44.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481332324.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.775 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds