Wall clock time and date at job start Wed Apr 1 2020 04:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47598 * 2 1 4 4 N 1.46498 * 109.46994 * 120.00158 * 2 1 3 5 5 C 1.36939 * 119.99978 * 275.00110 * 4 2 1 6 6 H 1.07995 * 119.99848 * 359.97438 * 5 4 2 7 7 C 1.38819 * 119.99897 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99706 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00142 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47312 * 90.00124 * 9 7 5 11 11 H 1.48499 * 109.47294 * 210.00283 * 9 7 5 12 12 H 1.48501 * 109.47102 * 330.00212 * 9 7 5 13 13 C 1.53002 * 109.47049 * 239.99663 * 2 1 3 14 14 C 1.53045 * 109.45635 * 65.00404 * 13 2 1 15 15 C 1.53191 * 109.31174 * 178.61251 * 14 13 2 16 16 N 1.46928 * 108.89342 * 54.56199 * 15 14 13 17 17 C 1.34777 * 120.63387 * 126.46420 * 16 15 14 18 18 O 1.21294 * 119.99180 * 355.60035 * 17 16 15 19 19 C 1.50690 * 120.00536 * 175.59973 * 17 16 15 20 20 H 1.08994 * 109.43445 * 37.87723 * 19 17 16 21 21 C 1.53110 * 109.43595 * 157.78768 * 19 17 16 22 22 C 1.53493 * 109.31202 * 189.98048 * 21 19 17 23 23 C 1.50713 * 108.05614 * 311.29639 * 22 21 19 24 24 C 1.33860 * 128.67999 * 195.74421 * 23 22 21 25 25 N 1.34421 * 107.80025 * 179.90195 * 24 23 22 26 26 C 1.30788 * 109.32116 * 0.02562 * 25 24 23 27 27 N 1.34410 * 108.55234 * 0.06152 * 26 25 24 28 28 C 1.46447 * 128.46453 * 179.86845 * 27 26 25 29 29 C 1.46967 * 118.71662 * 306.64521 * 16 15 14 30 30 C 1.53039 * 109.46017 * 304.93665 * 13 2 1 31 31 H 1.09004 * 109.47486 * 300.00216 * 1 2 3 32 32 H 1.09005 * 109.47355 * 59.99571 * 1 2 3 33 33 H 1.08994 * 109.47598 * 180.02562 * 1 2 3 34 34 H 0.97003 * 119.99976 * 94.99641 * 4 2 1 35 35 H 0.97002 * 120.00040 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.45961 * 184.97631 * 13 2 1 37 37 H 1.09001 * 109.49579 * 58.66375 * 14 13 2 38 38 H 1.09001 * 109.52262 * 298.57895 * 14 13 2 39 39 H 1.08994 * 109.58912 * 174.42264 * 15 14 13 40 40 H 1.09002 * 109.58794 * 294.71200 * 15 14 13 41 41 H 1.08999 * 109.49614 * 309.93127 * 21 19 17 42 42 H 1.09002 * 109.50235 * 70.02920 * 21 19 17 43 43 H 1.09004 * 109.74398 * 70.93001 * 22 21 19 44 44 H 1.08998 * 109.75004 * 191.59972 * 22 21 19 45 45 H 1.08008 * 126.09904 * 359.86550 * 24 23 22 46 46 H 1.07998 * 125.72421 * 180.02562 * 26 25 24 47 47 H 1.08993 * 109.63641 * 77.57441 * 28 27 26 48 48 H 1.09007 * 109.55431 * 317.11104 * 28 27 26 49 49 H 1.08998 * 109.46342 * 293.56826 * 29 16 15 50 50 H 1.08996 * 109.70973 * 173.28514 * 29 16 15 51 51 H 1.08996 * 109.49894 * 301.33423 * 30 13 2 52 52 H 1.08994 * 109.50082 * 61.43580 * 30 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1490 -0.0075 2.3758 6 1 1.8925 1.0404 2.4242 7 6 2.6122 -0.6618 3.5091 8 7 2.7383 -0.0051 4.6427 9 14 3.0565 -2.4743 3.4252 10 1 4.4891 -2.6164 3.0608 11 1 2.8174 -3.1043 4.7484 12 1 2.2161 -3.1429 2.3995 13 6 2.0400 -0.7213 -1.2492 14 6 1.6350 0.0693 -2.4955 15 6 2.1769 -0.6373 -3.7420 16 7 1.7158 -2.0323 -3.7363 17 6 1.0686 -2.5461 -4.8011 18 8 0.7913 -1.8344 -5.7433 19 6 0.6897 -4.0044 -4.8210 20 1 0.3771 -4.3115 -3.8231 21 6 -0.4642 -4.2176 -5.8045 22 6 -1.0128 -5.6419 -5.6424 23 6 0.1537 -6.5961 -5.6553 24 6 0.1470 -7.9233 -5.8297 25 7 1.4193 -8.3525 -5.7660 26 6 2.2103 -7.3321 -5.5574 27 7 1.4611 -6.2189 -5.4806 28 6 1.8991 -4.8398 -5.2550 29 6 1.9704 -2.8553 -2.5456 30 6 1.4308 -2.1238 -1.3125 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 2.2489 -1.6318 1.1526 35 1 3.0617 -0.4624 5.4347 36 1 3.1263 -0.7991 -1.2056 37 1 2.0498 1.0757 -2.4385 38 1 0.5480 0.1265 -2.5533 39 1 1.8087 -0.1344 -4.6362 40 1 3.2665 -0.6127 -3.7313 41 1 -1.2558 -3.4972 -5.5983 42 1 -0.1035 -4.0806 -6.8239 43 1 -1.5463 -5.7255 -4.6955 44 1 -1.6876 -5.8728 -6.4666 45 1 -0.7251 -8.5395 -5.9919 46 1 3.2852 -7.3766 -5.4623 47 1 2.3128 -4.4314 -6.1769 48 1 2.6571 -4.8212 -4.4718 49 1 3.0432 -3.0137 -2.4362 50 1 1.4678 -3.8169 -2.6491 51 1 1.7003 -2.6784 -0.4137 52 1 0.3458 -2.0465 -1.3813 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481332324.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:20 Heat of formation + Delta-G solvation = 15.156711 kcal Electronic energy + Delta-G solvation = -31416.974174 eV Core-core repulsion = 27416.503301 eV Total energy + Delta-G solvation = -4000.470874 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.33131 -41.52172 -39.55873 -37.33673 -36.95549 -34.71676 -33.98909 -33.00832 -32.19653 -31.46845 -30.21058 -28.82290 -26.86020 -25.95661 -25.15938 -24.44201 -23.72795 -22.48674 -22.33973 -20.95836 -20.17388 -19.77459 -19.49842 -18.27885 -18.12450 -17.03338 -16.74079 -16.53829 -16.37095 -16.20188 -15.53348 -15.32393 -15.19538 -15.08535 -14.92300 -14.86460 -14.67629 -14.47443 -14.28065 -14.16700 -14.07200 -13.93886 -13.17278 -13.13547 -13.05197 -12.92204 -12.83726 -12.73690 -12.69071 -12.20915 -12.11250 -11.97751 -11.84290 -11.82325 -11.60387 -11.35877 -11.19622 -10.97065 -10.91486 -10.77045 -10.51668 -9.71490 -9.28410 -9.27962 -7.99758 -5.32297 1.10467 1.35754 1.37038 1.42582 1.49929 1.73410 2.00049 2.19744 2.50666 3.24259 3.31670 3.32130 3.47536 3.55911 3.69078 3.75937 3.87206 3.93045 3.94543 4.06791 4.13819 4.14468 4.20894 4.30601 4.36540 4.38229 4.45335 4.53148 4.57873 4.62360 4.69622 4.76703 4.79758 4.84606 4.90865 4.91567 4.97297 5.00981 5.07602 5.09422 5.14665 5.21364 5.30602 5.39825 5.41223 5.53090 5.68133 5.79565 5.81186 6.24739 6.26612 6.31588 7.03013 7.11660 7.12150 7.89027 8.08531 9.22336 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012982 B = 0.002708 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.338652 B =10335.768963 C =11704.670901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.037 0.963 4 N -0.748 5.748 5 C -0.225 4.225 6 H 0.051 0.949 7 C -0.070 4.070 8 N -0.989 5.989 9 Si 0.955 3.045 10 H -0.277 1.277 11 H -0.302 1.302 12 H -0.245 1.245 13 C -0.084 4.084 14 C -0.119 4.119 15 C 0.114 3.886 16 N -0.601 5.601 17 C 0.526 3.474 18 O -0.571 6.571 19 C -0.116 4.116 20 H 0.119 0.881 21 C -0.101 4.101 22 C -0.040 4.040 23 C -0.026 4.026 24 C -0.048 4.048 25 N -0.537 5.537 26 C 0.183 3.817 27 N -0.455 5.455 28 C 0.120 3.880 29 C 0.105 3.895 30 C -0.131 4.131 31 H 0.023 0.977 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.366 0.634 35 H 0.256 0.744 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.178 0.822 46 H 0.233 0.767 47 H 0.091 0.909 48 H 0.121 0.879 49 H 0.089 0.911 50 H 0.104 0.896 51 H 0.068 0.932 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.633 -11.734 -25.174 28.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.068 3.932 3 H 0.055 0.945 4 N -0.393 5.393 5 C -0.356 4.356 6 H 0.069 0.931 7 C -0.261 4.261 8 N -0.640 5.640 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.229 1.229 12 H -0.169 1.169 13 C -0.103 4.103 14 C -0.158 4.158 15 C -0.008 4.008 16 N -0.333 5.333 17 C 0.314 3.686 18 O -0.451 6.451 19 C -0.137 4.137 20 H 0.137 0.863 21 C -0.140 4.140 22 C -0.078 4.078 23 C -0.141 4.141 24 C -0.195 4.195 25 N -0.256 5.256 26 C -0.099 4.099 27 N -0.139 5.139 28 C -0.003 4.003 29 C -0.017 4.017 30 C -0.169 4.169 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.200 0.800 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.195 0.805 46 H 0.249 0.751 47 H 0.109 0.891 48 H 0.139 0.861 49 H 0.108 0.892 50 H 0.122 0.878 51 H 0.087 0.913 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.443 -11.849 -25.595 28.414 hybrid contribution 0.117 0.275 1.054 1.096 sum -3.326 -11.574 -24.541 27.336 Atomic orbital electron populations 1.22372 0.98023 1.01294 1.00103 1.20399 0.92563 0.94937 0.85310 0.94472 1.42791 1.80005 1.09572 1.06892 1.19019 1.34638 0.94221 0.87704 0.93088 1.25541 1.02636 1.02785 0.95135 1.69900 1.54992 1.37840 1.01277 0.85419 0.78759 0.80580 0.77070 1.20264 1.22914 1.16929 1.21303 1.00370 0.95175 0.93445 1.21896 1.01645 0.99379 0.92863 1.21629 0.99648 0.80787 0.98714 1.48229 1.56116 1.13078 1.15840 1.20452 0.76703 0.89670 0.81761 1.90711 1.55176 1.62210 1.36970 1.21609 0.97175 0.91188 1.03749 0.86292 1.21457 0.96767 0.97101 0.98643 1.20312 0.92746 0.89891 1.04862 1.21495 0.86477 0.96151 1.09933 1.22147 0.95535 0.92664 1.09120 1.70479 1.02709 1.31042 1.21325 1.25394 1.00105 0.79894 1.04492 1.45451 1.06973 1.08382 1.53064 1.21873 0.96560 0.77695 1.04141 1.22025 1.02554 0.94174 0.82938 1.21993 1.01364 0.95762 0.97781 0.95779 0.91428 0.92566 0.79955 0.93543 0.90848 0.90012 0.91508 0.89804 0.89919 0.90024 0.91696 0.88485 0.87732 0.80457 0.75101 0.89052 0.86116 0.89235 0.87757 0.91312 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 8.76 71.98 0.63 -4.30 16 2 C 0.18 5.85 2.67 44.99 0.12 5.97 16 3 H 0.04 1.37 8.08 -2.39 -0.02 1.35 16 4 N -0.75 -31.90 4.86 -322.95 -1.57 -33.47 16 5 C -0.22 -12.33 10.41 84.03 0.87 -11.45 16 6 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 7 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 8 N -0.99 -62.75 13.97 21.65 0.30 -62.45 16 9 Si 0.95 43.38 27.74 68.60 1.90 45.29 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 12 H -0.25 -9.64 6.52 99.48 0.65 -8.99 16 13 C -0.08 -1.95 2.08 -10.76 -0.02 -1.97 16 14 C -0.12 -2.28 5.08 30.67 0.16 -2.12 16 15 C 0.11 1.91 6.43 86.36 0.56 2.47 16 16 N -0.60 -9.18 2.98 -818.81 -2.44 -11.62 16 17 C 0.53 8.92 6.80 87.65 0.60 9.52 16 18 O -0.57 -14.05 15.63 -3.07 -0.05 -14.10 16 19 C -0.12 -1.35 1.69 -11.42 -0.02 -1.37 16 20 H 0.12 1.13 6.18 -2.39 -0.01 1.12 16 21 C -0.10 -1.27 4.62 30.80 0.14 -1.13 16 22 C -0.04 -0.42 6.31 30.02 0.19 -0.23 16 23 C -0.03 -0.40 6.57 40.73 0.27 -0.13 16 24 C -0.05 -0.91 11.84 83.30 0.99 0.08 16 25 N -0.54 -11.69 11.27 -200.96 -2.26 -13.95 16 26 C 0.18 2.87 12.66 180.38 2.28 5.16 16 27 N -0.46 -6.32 3.13 -514.95 -1.61 -7.93 16 28 C 0.12 1.18 6.24 86.48 0.54 1.72 16 29 C 0.10 1.34 6.00 86.36 0.52 1.86 16 30 C -0.13 -2.55 4.72 30.67 0.14 -2.41 16 31 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.07 1.72 6.60 -2.38 -0.02 1.71 16 33 H 0.06 1.64 6.38 -2.39 -0.02 1.63 16 34 H 0.37 14.59 4.21 -92.71 -0.39 14.20 16 35 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.35 6.64 -2.39 -0.02 1.33 16 39 H 0.08 1.60 7.00 -2.39 -0.02 1.58 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.08 1.08 8.11 -2.39 -0.02 1.06 16 42 H 0.06 1.00 8.12 -2.39 -0.02 0.98 16 43 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 46 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 47 H 0.09 0.96 8.12 -2.39 -0.02 0.94 16 48 H 0.12 0.67 7.85 -2.38 -0.02 0.65 16 49 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.10 0.91 5.42 -2.39 -0.01 0.90 16 51 H 0.07 1.53 6.74 -2.39 -0.02 1.52 16 52 H 0.07 1.44 6.43 -2.39 -0.02 1.43 16 Total: -1.00 -76.75 394.04 3.17 -73.57 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.48 Total: 26.58 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 8.43 Total: -1.90 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -7.58 Total: -129.43 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.05 Total: -14.10 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.90 Total: 45.29 kcal Total: -76.75 3.17 -73.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481332324.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.730 kcal (2) G-P(sol) polarization free energy of solvation -76.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds