Wall clock time and date at job start Wed Apr 1 2020 04:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46969 * 2 1 4 4 N 1.46505 * 109.46750 * 119.99245 * 2 1 3 5 5 C 1.36932 * 120.00431 * 275.00113 * 4 2 1 6 6 H 1.08000 * 119.99714 * 0.02562 * 5 4 2 7 7 C 1.38808 * 120.00361 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99832 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00301 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46701 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47130 * 120.00207 * 9 7 5 12 12 H 1.48498 * 109.47060 * 239.99921 * 9 7 5 13 13 C 1.52996 * 109.47289 * 239.99419 * 2 1 3 14 14 C 1.53038 * 109.46196 * 65.00697 * 13 2 1 15 15 C 1.53187 * 109.31284 * 178.61590 * 14 13 2 16 16 N 1.46923 * 108.77883 * 54.63381 * 15 14 13 17 17 C 1.34775 * 120.63401 * 126.37345 * 16 15 14 18 18 O 1.21283 * 119.99943 * 184.36638 * 17 16 15 19 19 C 1.50702 * 119.99794 * 4.35277 * 17 16 15 20 20 H 1.08997 * 109.40016 * 322.21604 * 19 17 16 21 21 C 1.53121 * 109.43134 * 202.32722 * 19 17 16 22 22 C 1.53490 * 109.30980 * 170.02763 * 21 19 17 23 23 C 1.50701 * 108.06358 * 48.68403 * 22 21 19 24 24 C 1.33866 * 128.67770 * 164.22832 * 23 22 21 25 25 N 1.34431 * 107.79662 * 180.13020 * 24 23 22 26 26 C 1.30786 * 109.32044 * 359.97438 * 25 24 23 27 27 N 1.34409 * 108.55401 * 359.95368 * 26 25 24 28 28 C 1.46466 * 128.44069 * 180.16854 * 27 26 25 29 29 C 1.46928 * 118.73390 * 306.63794 * 16 15 14 30 30 C 1.52760 * 109.00887 * 53.31627 * 29 16 15 31 31 H 1.08994 * 109.47526 * 300.00636 * 1 2 3 32 32 H 1.09010 * 109.46484 * 60.00409 * 1 2 3 33 33 H 1.09002 * 109.46969 * 180.02562 * 1 2 3 34 34 H 0.97005 * 119.99513 * 95.00053 * 4 2 1 35 35 H 0.97002 * 120.00059 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.45876 * 184.97157 * 13 2 1 37 37 H 1.08997 * 109.50121 * 58.65756 * 14 13 2 38 38 H 1.09001 * 109.52067 * 298.58037 * 14 13 2 39 39 H 1.08999 * 109.58788 * 294.83659 * 15 14 13 40 40 H 1.09007 * 109.70005 * 174.48937 * 15 14 13 41 41 H 1.08992 * 109.49797 * 289.97269 * 21 19 17 42 42 H 1.09004 * 109.49546 * 50.07167 * 21 19 17 43 43 H 1.09001 * 109.73018 * 289.04606 * 22 21 19 44 44 H 1.09004 * 109.75022 * 168.33303 * 22 21 19 45 45 H 1.08001 * 126.10477 * 0.11866 * 24 23 22 46 46 H 1.07995 * 125.72021 * 179.97438 * 26 25 24 47 47 H 1.09000 * 109.60321 * 282.41178 * 28 27 26 48 48 H 1.08997 * 109.60800 * 42.89423 * 28 27 26 49 49 H 1.09004 * 109.58560 * 173.14496 * 29 16 15 50 50 H 1.08997 * 109.58779 * 293.57078 * 29 16 15 51 51 H 1.08995 * 109.56844 * 185.54901 * 30 29 16 52 52 H 1.09004 * 109.38861 * 65.50742 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8918 1.0405 2.4243 7 6 2.6111 -0.6617 3.5094 8 7 2.9241 -1.9388 3.4504 9 14 2.7888 0.2701 5.1187 10 1 2.3739 1.6823 4.9213 11 1 1.9276 -0.3585 6.1524 12 1 4.2055 0.2271 5.5618 13 6 2.0400 -0.7213 -1.2491 14 6 1.6352 0.0692 -2.4954 15 6 2.1771 -0.6376 -3.7418 16 7 1.7131 -2.0316 -3.7344 17 6 1.0634 -2.5448 -4.7978 18 8 0.6159 -3.6711 -4.7494 19 6 0.8927 -1.7192 -6.0469 20 1 0.7069 -0.6809 -5.7720 21 6 -0.2949 -2.2534 -6.8523 22 6 -0.6232 -1.2709 -7.9849 23 6 0.6609 -0.9342 -8.6983 24 6 0.8267 -0.3616 -9.8969 25 7 2.1477 -0.2605 -10.1247 26 6 2.8017 -0.7522 -9.1044 27 7 1.9121 -1.1815 -8.1929 28 6 2.1693 -1.8013 -6.8910 29 6 1.9658 -2.8538 -2.5432 30 6 1.4310 -2.1240 -1.3123 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 2.2489 -1.6317 1.1528 35 1 3.2474 -2.3960 4.2425 36 1 3.1264 -0.7990 -1.2055 37 1 2.0499 1.0755 -2.4386 38 1 0.5483 0.1264 -2.5533 39 1 3.2668 -0.6150 -3.7300 40 1 1.8110 -0.1354 -4.6374 41 1 -0.0397 -3.2247 -7.2760 42 1 -1.1607 -2.3573 -6.1983 43 1 -1.0624 -0.3639 -7.5695 44 1 -1.3218 -1.7330 -8.6825 45 1 0.0397 -0.0385 -10.5622 46 1 3.8763 -0.8041 -9.0099 47 1 2.4469 -2.8459 -7.0317 48 1 2.9768 -1.2707 -6.3865 49 1 1.4581 -3.8128 -2.6467 50 1 3.0378 -3.0157 -2.4315 51 1 1.7004 -2.6784 -0.4134 52 1 0.3459 -2.0466 -1.3805 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481332325.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:31 Heat of formation + Delta-G solvation = 31.020488 kcal Electronic energy + Delta-G solvation = -31169.073844 eV Core-core repulsion = 27169.290875 eV Total energy + Delta-G solvation = -3999.782969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.70411 -40.65202 -38.41449 -36.57360 -35.58570 -33.43756 -33.00483 -31.74059 -30.95277 -30.39681 -28.35818 -28.10629 -25.80170 -24.98318 -23.92484 -23.67567 -22.57571 -21.76622 -21.50320 -19.95535 -19.18947 -18.64658 -17.65014 -17.49723 -17.10069 -16.24701 -15.90356 -15.61177 -14.99964 -14.70706 -14.54570 -14.46208 -14.33763 -14.15288 -14.08505 -13.81244 -13.71914 -13.49528 -13.28228 -13.08807 -12.72347 -12.46948 -12.28364 -12.23560 -12.07439 -11.67937 -11.58238 -11.42787 -11.29876 -11.13752 -10.89716 -10.68661 -10.50620 -10.34766 -10.26063 -10.11997 -9.96942 -9.87588 -9.75855 -9.60928 -8.96456 -8.78940 -8.65380 -6.99770 -5.80970 -3.09181 1.72095 2.11637 2.44151 2.74547 2.87127 3.39521 3.45448 3.47511 3.89699 3.96260 4.03325 4.30136 4.42413 4.45722 4.53823 4.67979 4.68391 4.71011 4.86269 4.91491 4.95566 5.01629 5.09426 5.16904 5.25295 5.33369 5.36943 5.42724 5.48370 5.53515 5.59501 5.68489 5.72281 5.75941 5.85215 5.87338 6.01366 6.02413 6.10013 6.17597 6.21498 6.37974 6.41809 6.47120 6.59935 6.69165 6.85183 6.85876 7.08489 7.16281 7.66788 7.75734 7.86881 8.38217 9.49419 10.07451 10.41666 11.41847 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.002066 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.802356 B =13547.817342 C =13788.805116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.724 5.724 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.015 4.015 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.090 4.090 14 C -0.129 4.129 15 C 0.102 3.898 16 N -0.603 5.603 17 C 0.521 3.479 18 O -0.534 6.534 19 C -0.122 4.122 20 H 0.106 0.894 21 C -0.105 4.105 22 C -0.046 4.046 23 C -0.024 4.024 24 C -0.025 4.025 25 N -0.496 5.496 26 C 0.185 3.815 27 N -0.455 5.455 28 C 0.118 3.882 29 C 0.110 3.890 30 C -0.128 4.128 31 H 0.050 0.950 32 H 0.035 0.965 33 H 0.049 0.951 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.169 0.831 46 H 0.205 0.795 47 H 0.092 0.908 48 H 0.098 0.902 49 H 0.090 0.910 50 H 0.069 0.931 51 H 0.085 0.915 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 1.652 -24.304 24.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.069 3.931 3 H 0.063 0.937 4 N -0.366 5.366 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.211 4.211 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.110 4.110 14 C -0.168 4.168 15 C -0.021 4.021 16 N -0.336 5.336 17 C 0.308 3.692 18 O -0.411 6.411 19 C -0.143 4.143 20 H 0.124 0.876 21 C -0.143 4.143 22 C -0.085 4.085 23 C -0.138 4.138 24 C -0.172 4.172 25 N -0.214 5.214 26 C -0.097 4.097 27 N -0.139 5.139 28 C -0.005 4.005 29 C -0.012 4.012 30 C -0.166 4.166 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.186 0.814 46 H 0.222 0.778 47 H 0.110 0.890 48 H 0.117 0.883 49 H 0.109 0.891 50 H 0.087 0.913 51 H 0.104 0.896 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.327 1.444 -24.692 24.957 hybrid contribution -0.014 -0.056 1.863 1.864 sum -3.341 1.388 -22.830 23.115 Atomic orbital electron populations 1.22542 0.99610 1.00904 0.99661 1.20186 0.91732 0.95130 0.86093 0.93656 1.42467 1.78125 1.10714 1.05328 1.19274 1.36231 0.93855 0.87383 0.91239 1.24728 1.02312 0.95983 0.98035 1.69660 1.51108 1.08646 1.28775 0.86147 0.77294 0.78790 0.84143 1.20614 1.21929 1.21910 1.21403 1.00483 0.94578 0.94488 1.22000 1.01729 0.99197 0.93843 1.21917 0.99685 0.80955 0.99507 1.48203 1.56331 1.12988 1.16043 1.20116 0.77963 0.87060 0.84105 1.90723 1.48297 1.19464 1.82608 1.21651 0.96539 1.02196 0.93957 0.87606 1.21511 0.97051 0.99197 0.96568 1.20269 0.91961 0.99774 0.96459 1.21205 0.86991 1.08092 0.97487 1.21845 0.93761 1.05631 0.95951 1.70516 1.04900 1.21015 1.24968 1.24830 0.97284 1.01404 0.86165 1.45367 1.06806 1.45870 1.15823 1.21795 0.97668 0.99874 0.81197 1.21675 1.00927 0.94936 0.83633 1.21919 1.00994 0.96425 0.97233 0.93115 0.94605 0.93219 0.78239 0.93588 0.90903 0.90526 0.91151 0.90930 0.90220 0.90359 0.89725 0.89745 0.88942 0.81376 0.77850 0.88963 0.88350 0.89136 0.91273 0.89615 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 8.76 37.16 0.33 -2.50 16 2 C 0.18 3.22 2.67 -67.93 -0.18 3.04 16 3 H 0.05 0.85 8.08 -51.93 -0.42 0.43 16 4 N -0.72 -17.04 5.06 -53.43 -0.27 -17.31 16 5 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 9 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C -0.09 -1.26 2.08 -90.58 -0.19 -1.45 16 14 C -0.13 -1.34 5.08 -26.62 -0.14 -1.47 16 15 C 0.10 0.84 6.01 -3.72 -0.02 0.81 16 16 N -0.60 -6.16 2.98 -173.03 -0.52 -6.68 16 17 C 0.52 5.54 6.80 -10.99 -0.07 5.46 16 18 O -0.53 -7.65 15.63 5.55 0.09 -7.57 16 19 C -0.12 -0.91 1.69 -91.57 -0.15 -1.07 16 20 H 0.11 0.70 6.18 -51.93 -0.32 0.37 16 21 C -0.11 -0.79 4.62 -26.41 -0.12 -0.92 16 22 C -0.05 -0.29 6.31 -27.63 -0.17 -0.47 16 23 C -0.02 -0.20 6.57 -81.73 -0.54 -0.74 16 24 C -0.02 -0.24 11.84 -17.95 -0.21 -0.45 16 25 N -0.50 -5.52 11.27 -14.87 -0.17 -5.68 16 26 C 0.19 1.60 12.66 -90.71 -1.15 0.45 16 27 N -0.45 -3.66 3.13 -114.11 -0.36 -4.01 16 28 C 0.12 0.78 6.23 -3.93 -0.02 0.75 16 29 C 0.11 1.33 6.41 -3.93 -0.03 1.30 16 30 C -0.13 -1.78 4.70 -26.83 -0.13 -1.91 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.50 6.60 -51.92 -0.34 0.16 16 33 H 0.05 0.86 6.38 -51.93 -0.33 0.53 16 34 H 0.38 9.53 6.35 -40.82 -0.26 9.27 16 35 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.75 6.64 -51.93 -0.34 0.41 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.49 5.37 -51.93 -0.28 0.21 16 41 H 0.08 0.69 8.12 -51.93 -0.42 0.26 16 42 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 46 H 0.20 1.06 8.06 -52.49 -0.42 0.63 16 47 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 48 H 0.10 0.48 7.81 -51.93 -0.41 0.08 16 49 H 0.09 1.20 7.00 -51.93 -0.36 0.83 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.09 1.40 6.74 -51.93 -0.35 1.05 16 52 H 0.07 0.99 6.43 -51.93 -0.33 0.66 16 LS Contribution 397.02 15.07 5.98 5.98 Total: -1.00 -33.36 397.02 -10.95 -44.31 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -8.37 Total: 6.88 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.05 Total: -6.14 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -0.59 Total: -60.43 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.09 Total: -7.57 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.36 -10.95 -44.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481332325.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.329 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds