Wall clock time and date at job start Wed Apr 1 2020 04:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47408 * 2 1 4 4 N 1.46502 * 109.46884 * 239.99774 * 2 1 3 5 5 C 1.36943 * 119.99641 * 85.00465 * 4 2 1 6 6 H 1.07997 * 119.99910 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99759 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00104 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99757 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47160 * 59.99387 * 9 7 5 11 11 H 1.48498 * 109.46957 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46866 * 299.99641 * 9 7 5 13 13 C 1.53000 * 109.47165 * 120.00081 * 2 1 3 14 14 C 1.53031 * 109.46324 * 299.99895 * 13 2 1 15 15 C 1.53188 * 109.31705 * 178.62949 * 14 13 2 16 16 N 1.46924 * 108.77835 * 54.63326 * 15 14 13 17 17 C 1.34777 * 120.62993 * 126.36832 * 16 15 14 18 18 O 1.21273 * 120.00077 * 5.00330 * 17 16 15 19 19 C 1.50704 * 119.99778 * 184.72650 * 17 16 15 20 20 H 1.09003 * 109.43059 * 325.16766 * 19 17 16 21 21 C 1.53116 * 109.43312 * 85.07312 * 19 17 16 22 22 C 1.53497 * 109.30749 * 189.98168 * 21 19 17 23 23 C 1.50710 * 108.05628 * 311.29678 * 22 21 19 24 24 C 1.33867 * 128.67897 * 195.74375 * 23 22 21 25 25 N 1.34420 * 107.79623 * 179.90815 * 24 23 22 26 26 C 1.30785 * 109.32619 * 0.02562 * 25 24 23 27 27 N 1.34412 * 108.55168 * 0.05965 * 26 25 24 28 28 C 1.46466 * 128.44607 * 179.80861 * 27 26 25 29 29 C 1.46930 * 118.73674 * 306.65043 * 16 15 14 30 30 C 1.52757 * 109.00834 * 53.30549 * 29 16 15 31 31 H 1.09005 * 109.47128 * 299.99619 * 1 2 3 32 32 H 1.08997 * 109.47399 * 60.00006 * 1 2 3 33 33 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 34 34 H 0.96994 * 120.00293 * 264.99797 * 4 2 1 35 35 H 0.96999 * 119.99913 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.46375 * 59.97581 * 13 2 1 37 37 H 1.09008 * 109.49841 * 58.67711 * 14 13 2 38 38 H 1.09006 * 109.49939 * 298.58071 * 14 13 2 39 39 H 1.09009 * 109.58501 * 294.84638 * 15 14 13 40 40 H 1.09000 * 109.70628 * 174.49368 * 15 14 13 41 41 H 1.08999 * 109.49918 * 309.93219 * 21 19 17 42 42 H 1.08994 * 109.49519 * 70.03382 * 21 19 17 43 43 H 1.08999 * 109.74066 * 70.93396 * 22 21 19 44 44 H 1.08992 * 109.74147 * 191.60865 * 22 21 19 45 45 H 1.08001 * 126.10126 * 359.86742 * 24 23 22 46 46 H 1.07999 * 125.72855 * 180.02562 * 26 25 24 47 47 H 1.09002 * 109.60145 * 77.58141 * 28 27 26 48 48 H 1.08999 * 109.60173 * 317.10908 * 28 27 26 49 49 H 1.09003 * 109.58456 * 173.14431 * 29 16 15 50 50 H 1.08996 * 109.58309 * 293.56287 * 29 16 15 51 51 H 1.09004 * 109.56231 * 185.55836 * 30 29 16 52 52 H 1.08995 * 109.36254 * 65.49847 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4243 7 6 2.6112 -0.6620 -3.5093 8 7 2.9241 -1.9390 -3.4502 9 14 2.7890 0.2698 -5.1186 10 1 3.7443 1.3922 -4.9377 11 1 3.2980 -0.6486 -6.1686 12 1 1.4664 0.8066 -5.5284 13 6 2.0400 -0.7213 1.2492 14 6 1.5298 0.0003 2.4986 15 6 2.0139 -0.7442 3.7469 16 7 3.4756 -0.8768 3.6813 17 6 4.2496 -0.4571 4.7018 18 8 3.7381 -0.0486 5.7226 19 6 5.7508 -0.5014 4.5765 20 1 6.0402 -1.3735 3.9900 21 6 6.2413 0.7689 3.8765 22 6 7.7277 0.6137 3.5263 23 6 8.4486 0.1233 4.7556 24 6 9.7631 0.1189 5.0088 25 7 9.9444 -0.4108 6.2308 26 6 8.7834 -0.7337 6.7392 27 7 7.8251 -0.4187 5.8509 28 6 6.3765 -0.5977 5.9722 29 6 4.0780 -1.4699 2.4796 30 6 3.5704 -0.7223 1.2479 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 3.2474 -2.3963 -4.2423 36 1 1.6762 -1.7488 1.2493 37 1 0.4400 0.0211 2.4872 38 1 1.9136 1.0205 2.5118 39 1 1.5583 -1.7339 3.7817 40 1 1.7375 -0.1832 4.6396 41 1 5.6669 0.9262 2.9636 42 1 6.1113 1.6234 4.5405 43 1 7.8422 -0.1097 2.7191 44 1 8.1359 1.5764 3.2187 45 1 10.5394 0.4765 4.3486 46 1 8.6218 -1.1792 7.7096 47 1 5.9639 0.1826 6.6117 48 1 6.1637 -1.5765 6.4022 49 1 5.1633 -1.3855 2.5352 50 1 3.7943 -2.5199 2.4089 51 1 3.9331 -1.2159 0.3462 52 1 3.9349 0.3046 1.2729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481332326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:37 Heat of formation + Delta-G solvation = 28.147669 kcal Electronic energy + Delta-G solvation = -31351.704664 eV Core-core repulsion = 27351.797121 eV Total energy + Delta-G solvation = -3999.907543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.59496 -40.61850 -38.28312 -36.53503 -35.56552 -33.34980 -32.99343 -31.62711 -30.91694 -30.49948 -28.37929 -28.09567 -25.80575 -24.94147 -23.85396 -23.16476 -22.61580 -21.67496 -21.13475 -19.90816 -19.50192 -18.81318 -17.91464 -17.21610 -16.96361 -16.21880 -15.75742 -15.50827 -15.01008 -14.69990 -14.45264 -14.32284 -14.13566 -14.07560 -13.97491 -13.83623 -13.66066 -13.45630 -13.33652 -12.82142 -12.64265 -12.56346 -12.29617 -12.16504 -12.04310 -11.70662 -11.50486 -11.38575 -11.24349 -11.06237 -10.89952 -10.78615 -10.38973 -10.35216 -10.26301 -10.14972 -9.98616 -9.82141 -9.71158 -9.64052 -8.96214 -8.76024 -8.54786 -7.00834 -5.82205 -3.10300 1.83625 2.26423 2.40428 2.85141 2.97222 3.39351 3.44765 3.45060 3.94044 4.04130 4.17514 4.41086 4.53038 4.53832 4.56024 4.76788 4.82962 4.88457 4.94518 4.99115 5.00598 5.10193 5.12657 5.25328 5.28115 5.40537 5.44537 5.47640 5.48984 5.57461 5.63067 5.66700 5.72393 5.83200 5.84258 5.91584 6.02895 6.10576 6.13836 6.23245 6.29862 6.39329 6.44848 6.52813 6.57688 6.69257 6.87048 6.96738 7.05950 7.18325 7.64978 7.85908 7.87351 8.36802 9.48126 10.05572 10.40328 11.40330 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.002636 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.759448 B =10621.029783 C =12343.576135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.068 0.932 7 C -0.012 4.012 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.287 1.287 13 C -0.090 4.090 14 C -0.128 4.128 15 C 0.112 3.888 16 N -0.601 5.601 17 C 0.526 3.474 18 O -0.546 6.546 19 C -0.122 4.122 20 H 0.106 0.894 21 C -0.114 4.114 22 C -0.045 4.045 23 C -0.024 4.024 24 C -0.025 4.025 25 N -0.497 5.497 26 C 0.183 3.817 27 N -0.455 5.455 28 C 0.121 3.879 29 C 0.100 3.900 30 C -0.123 4.123 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.169 0.831 46 H 0.204 0.796 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.083 0.917 50 H 0.072 0.928 51 H 0.094 0.906 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.311 1.665 18.663 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.069 3.931 3 H 0.063 0.937 4 N -0.364 5.364 5 C -0.368 4.368 6 H 0.086 0.914 7 C -0.208 4.208 8 N -0.582 5.582 9 Si 0.735 3.265 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.167 4.167 15 C -0.010 4.010 16 N -0.333 5.333 17 C 0.313 3.687 18 O -0.424 6.424 19 C -0.144 4.144 20 H 0.124 0.876 21 C -0.152 4.152 22 C -0.083 4.083 23 C -0.139 4.139 24 C -0.172 4.172 25 N -0.216 5.216 26 C -0.099 4.099 27 N -0.138 5.138 28 C -0.002 4.002 29 C -0.022 4.022 30 C -0.161 4.161 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.216 0.784 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.112 0.888 45 H 0.186 0.814 46 H 0.220 0.780 47 H 0.119 0.881 48 H 0.113 0.887 49 H 0.101 0.899 50 H 0.090 0.910 51 H 0.113 0.887 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.661 1.844 19.472 20.362 hybrid contribution -0.732 0.115 -1.443 1.622 sum 4.929 1.958 18.030 18.793 Atomic orbital electron populations 1.22502 0.99544 1.00766 0.99877 1.20204 0.91604 0.95290 0.86050 0.93745 1.42400 1.78121 1.10587 1.05273 1.19165 1.36423 0.93765 0.87403 0.91422 1.24697 1.02285 0.95930 0.97929 1.69632 1.51003 1.08610 1.28985 0.86319 0.77769 0.78640 0.83762 1.21313 1.21735 1.21372 1.21381 0.94856 0.99989 0.94691 1.22022 1.01324 0.99579 0.93738 1.21679 0.78667 1.01009 0.99625 1.48149 1.07350 1.60217 1.17590 1.20091 0.88290 0.77259 0.83099 1.90692 1.75246 1.47577 1.28924 1.21604 0.93048 1.02320 0.97394 0.87625 1.21626 0.96195 0.95721 1.01635 1.20240 0.92840 1.02391 0.92803 1.21212 0.93696 1.06943 0.92023 1.21844 0.93840 1.06244 0.95277 1.70499 1.24489 1.17002 1.09566 1.24789 0.82610 1.04920 0.97557 1.45409 1.07592 1.46124 1.14700 1.21759 0.76475 1.04480 0.97439 1.21938 0.98087 0.97743 0.84455 1.21825 0.96184 1.00965 0.97101 0.94329 0.92994 0.93597 0.78363 0.93499 0.91348 0.90246 0.91666 0.91439 0.89305 0.89412 0.90562 0.89392 0.88787 0.81363 0.77955 0.88121 0.88739 0.89926 0.90961 0.88713 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 9.14 37.16 0.34 -2.43 16 2 C 0.18 3.15 2.47 -67.93 -0.17 2.98 16 3 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 4 N -0.72 -16.39 4.41 -53.43 -0.24 -16.62 16 5 C -0.24 -6.15 9.93 -15.06 -0.15 -6.30 16 6 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -26.76 13.06 55.49 0.72 -26.04 16 9 Si 0.90 21.59 29.55 -169.99 -5.02 16.56 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C -0.09 -1.23 1.79 -90.58 -0.16 -1.39 16 14 C -0.13 -1.47 5.04 -26.62 -0.13 -1.60 16 15 C 0.11 1.21 6.42 -3.71 -0.02 1.18 16 16 N -0.60 -6.37 2.98 -173.03 -0.52 -6.88 16 17 C 0.53 5.75 6.78 -10.98 -0.07 5.67 16 18 O -0.55 -7.55 15.34 5.56 0.09 -7.47 16 19 C -0.12 -1.04 1.69 -91.58 -0.15 -1.19 16 20 H 0.11 0.82 6.24 -51.93 -0.32 0.50 16 21 C -0.11 -0.93 5.09 -26.41 -0.13 -1.07 16 22 C -0.04 -0.34 6.31 -27.62 -0.17 -0.52 16 23 C -0.02 -0.24 6.57 -81.73 -0.54 -0.78 16 24 C -0.02 -0.27 11.84 -17.95 -0.21 -0.48 16 25 N -0.50 -6.13 11.27 -14.87 -0.17 -6.30 16 26 C 0.18 1.81 12.66 -90.71 -1.15 0.66 16 27 N -0.45 -4.31 3.13 -114.10 -0.36 -4.67 16 28 C 0.12 1.01 6.00 -3.93 -0.02 0.98 16 29 C 0.10 1.01 6.24 -3.93 -0.02 0.98 16 30 C -0.12 -1.59 5.20 -26.83 -0.14 -1.73 16 31 H 0.04 0.53 6.40 -51.93 -0.33 0.19 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.38 9.24 7.58 -40.82 -0.31 8.93 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.86 6.36 -51.92 -0.33 0.53 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 40 H 0.09 1.01 7.03 -51.93 -0.37 0.65 16 41 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 42 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.17 1.51 8.06 -52.49 -0.42 1.08 16 46 H 0.20 1.28 8.06 -52.49 -0.42 0.86 16 47 H 0.10 0.91 7.54 -51.93 -0.39 0.52 16 48 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.08 0.70 5.37 -51.93 -0.28 0.42 16 50 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.09 1.49 7.40 -51.93 -0.38 1.11 16 52 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 401.64 15.07 6.05 6.05 Total: -1.00 -31.85 401.64 -11.05 -42.90 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -8.60 Total: 7.93 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -3.02 Total: -5.47 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.55 Total: -60.51 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.09 Total: -7.47 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.85 -11.05 -42.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481332326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.048 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds