Wall clock time and date at job start Wed Apr 1 2020 04:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47408 * 2 1 4 4 N 1.46502 * 109.46884 * 239.99774 * 2 1 3 5 5 C 1.36943 * 119.99641 * 85.00465 * 4 2 1 6 6 H 1.07997 * 119.99910 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99759 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00104 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99757 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47160 * 59.99387 * 9 7 5 11 11 H 1.48498 * 109.46957 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46866 * 299.99641 * 9 7 5 13 13 C 1.53000 * 109.47165 * 120.00081 * 2 1 3 14 14 C 1.53031 * 109.46324 * 299.99895 * 13 2 1 15 15 C 1.53188 * 109.31705 * 178.62949 * 14 13 2 16 16 N 1.46924 * 108.77835 * 54.63326 * 15 14 13 17 17 C 1.34777 * 120.62993 * 126.36832 * 16 15 14 18 18 O 1.21273 * 120.00077 * 5.00330 * 17 16 15 19 19 C 1.50704 * 119.99778 * 184.72650 * 17 16 15 20 20 H 1.09003 * 109.43059 * 325.16766 * 19 17 16 21 21 C 1.53116 * 109.43312 * 85.07312 * 19 17 16 22 22 C 1.53497 * 109.30749 * 189.98168 * 21 19 17 23 23 C 1.50710 * 108.05628 * 311.29678 * 22 21 19 24 24 C 1.33867 * 128.67897 * 195.74375 * 23 22 21 25 25 N 1.34420 * 107.79623 * 179.90815 * 24 23 22 26 26 C 1.30785 * 109.32619 * 0.02562 * 25 24 23 27 27 N 1.34412 * 108.55168 * 0.05965 * 26 25 24 28 28 C 1.46466 * 128.44607 * 179.80861 * 27 26 25 29 29 C 1.46930 * 118.73674 * 306.65043 * 16 15 14 30 30 C 1.52757 * 109.00834 * 53.30549 * 29 16 15 31 31 H 1.09005 * 109.47128 * 299.99619 * 1 2 3 32 32 H 1.08997 * 109.47399 * 60.00006 * 1 2 3 33 33 H 1.09001 * 109.47236 * 180.02562 * 1 2 3 34 34 H 0.96994 * 120.00293 * 264.99797 * 4 2 1 35 35 H 0.96999 * 119.99913 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.46375 * 59.97581 * 13 2 1 37 37 H 1.09008 * 109.49841 * 58.67711 * 14 13 2 38 38 H 1.09006 * 109.49939 * 298.58071 * 14 13 2 39 39 H 1.09009 * 109.58501 * 294.84638 * 15 14 13 40 40 H 1.09000 * 109.70628 * 174.49368 * 15 14 13 41 41 H 1.08999 * 109.49918 * 309.93219 * 21 19 17 42 42 H 1.08994 * 109.49519 * 70.03382 * 21 19 17 43 43 H 1.08999 * 109.74066 * 70.93396 * 22 21 19 44 44 H 1.08992 * 109.74147 * 191.60865 * 22 21 19 45 45 H 1.08001 * 126.10126 * 359.86742 * 24 23 22 46 46 H 1.07999 * 125.72855 * 180.02562 * 26 25 24 47 47 H 1.09002 * 109.60145 * 77.58141 * 28 27 26 48 48 H 1.08999 * 109.60173 * 317.10908 * 28 27 26 49 49 H 1.09003 * 109.58456 * 173.14431 * 29 16 15 50 50 H 1.08996 * 109.58309 * 293.56287 * 29 16 15 51 51 H 1.09004 * 109.56231 * 185.55836 * 30 29 16 52 52 H 1.08995 * 109.36254 * 65.49847 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0403 -2.4243 7 6 2.6112 -0.6620 -3.5093 8 7 2.9241 -1.9390 -3.4502 9 14 2.7890 0.2698 -5.1186 10 1 3.7443 1.3922 -4.9377 11 1 3.2980 -0.6486 -6.1686 12 1 1.4664 0.8066 -5.5284 13 6 2.0400 -0.7213 1.2492 14 6 1.5298 0.0003 2.4986 15 6 2.0139 -0.7442 3.7469 16 7 3.4756 -0.8768 3.6813 17 6 4.2496 -0.4571 4.7018 18 8 3.7381 -0.0486 5.7226 19 6 5.7508 -0.5014 4.5765 20 1 6.0402 -1.3735 3.9900 21 6 6.2413 0.7689 3.8765 22 6 7.7277 0.6137 3.5263 23 6 8.4486 0.1233 4.7556 24 6 9.7631 0.1189 5.0088 25 7 9.9444 -0.4108 6.2308 26 6 8.7834 -0.7337 6.7392 27 7 7.8251 -0.4187 5.8509 28 6 6.3765 -0.5977 5.9722 29 6 4.0780 -1.4699 2.4796 30 6 3.5704 -0.7223 1.2479 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 3.2474 -2.3963 -4.2423 36 1 1.6762 -1.7488 1.2493 37 1 0.4400 0.0211 2.4872 38 1 1.9136 1.0205 2.5118 39 1 1.5583 -1.7339 3.7817 40 1 1.7375 -0.1832 4.6396 41 1 5.6669 0.9262 2.9636 42 1 6.1113 1.6234 4.5405 43 1 7.8422 -0.1097 2.7191 44 1 8.1359 1.5764 3.2187 45 1 10.5394 0.4765 4.3486 46 1 8.6218 -1.1792 7.7096 47 1 5.9639 0.1826 6.6117 48 1 6.1637 -1.5765 6.4022 49 1 5.1633 -1.3855 2.5352 50 1 3.7943 -2.5199 2.4089 51 1 3.9331 -1.2159 0.3462 52 1 3.9349 0.3046 1.2729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481332326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:35 Heat of formation + Delta-G solvation = 11.416512 kcal Electronic energy + Delta-G solvation = -31352.430182 eV Core-core repulsion = 27351.797121 eV Total energy + Delta-G solvation = -4000.633061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.32759 -41.50611 -39.37259 -37.32100 -36.89607 -34.64925 -33.98339 -32.72734 -32.12761 -31.47352 -29.90999 -28.83195 -26.82940 -26.08435 -25.18779 -24.16550 -23.49350 -22.47732 -22.19613 -21.13417 -20.41335 -19.63719 -19.13681 -18.55804 -17.81324 -17.07682 -16.76970 -16.48408 -16.34076 -15.66093 -15.59637 -15.34630 -15.15308 -15.12283 -14.96062 -14.80655 -14.61543 -14.38507 -14.19288 -14.06528 -13.95960 -13.56365 -13.46402 -13.04165 -12.97907 -12.87186 -12.80128 -12.71854 -12.29049 -12.20914 -12.19583 -12.12300 -11.97328 -11.79678 -11.46909 -11.33545 -11.18004 -10.93919 -10.90682 -10.74401 -10.47726 -9.68842 -9.28718 -8.92259 -7.89059 -5.14669 1.11157 1.42766 1.49716 1.50395 1.56421 1.65042 2.06434 2.19107 2.59638 3.24763 3.28177 3.44894 3.52353 3.72458 3.78615 3.80418 3.86974 3.92829 3.98888 4.12952 4.17868 4.25423 4.27633 4.34722 4.41242 4.44501 4.47879 4.57686 4.60977 4.62920 4.75343 4.81293 4.81875 4.89554 4.90792 4.92718 4.97913 5.06915 5.09094 5.10941 5.16372 5.27588 5.37468 5.41942 5.50378 5.54546 5.63831 5.70763 5.79601 6.26777 6.32223 6.34145 7.01614 7.10942 7.40990 8.19237 8.42061 9.33847 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.002636 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.759448 B =10621.029783 C =12343.576135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.173 3.827 3 H 0.035 0.965 4 N -0.730 5.730 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.071 4.071 8 N -0.966 5.966 9 Si 0.961 3.039 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.284 1.284 13 C -0.080 4.080 14 C -0.117 4.117 15 C 0.114 3.886 16 N -0.600 5.600 17 C 0.528 3.472 18 O -0.575 6.575 19 C -0.115 4.115 20 H 0.119 0.881 21 C -0.109 4.109 22 C -0.040 4.040 23 C -0.027 4.027 24 C -0.048 4.048 25 N -0.535 5.535 26 C 0.181 3.819 27 N -0.455 5.455 28 C 0.124 3.876 29 C 0.109 3.891 30 C -0.116 4.116 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.042 0.958 34 H 0.374 0.626 35 H 0.249 0.751 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.179 0.821 46 H 0.232 0.768 47 H 0.093 0.907 48 H 0.110 0.890 49 H 0.103 0.897 50 H 0.080 0.920 51 H 0.065 0.935 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.001 1.910 19.731 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.065 3.935 3 H 0.053 0.947 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.086 0.914 7 C -0.264 4.264 8 N -0.617 5.617 9 Si 0.791 3.209 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.211 1.211 13 C -0.100 4.100 14 C -0.156 4.156 15 C -0.008 4.008 16 N -0.331 5.331 17 C 0.316 3.684 18 O -0.455 6.455 19 C -0.137 4.137 20 H 0.137 0.863 21 C -0.147 4.147 22 C -0.078 4.078 23 C -0.142 4.142 24 C -0.195 4.195 25 N -0.254 5.254 26 C -0.101 4.101 27 N -0.139 5.139 28 C 0.002 3.998 29 C -0.013 4.013 30 C -0.155 4.155 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.206 0.794 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.196 0.804 46 H 0.249 0.751 47 H 0.111 0.889 48 H 0.129 0.871 49 H 0.121 0.879 50 H 0.099 0.901 51 H 0.083 0.917 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.329 2.124 20.559 21.344 hybrid contribution -0.687 0.095 -1.704 1.840 sum 4.642 2.219 18.855 19.544 Atomic orbital electron populations 1.22380 0.98343 1.00731 1.00432 1.20431 0.92298 0.94799 0.85977 0.94660 1.42547 1.78268 1.10232 1.05982 1.19479 1.34359 0.93864 0.88540 0.91368 1.25359 1.03460 0.96754 1.00812 1.69768 1.52871 1.09892 1.29203 0.85401 0.77699 0.77485 0.80324 1.20568 1.22472 1.21070 1.21251 0.95376 0.99580 0.93757 1.21921 1.01928 0.99020 0.92713 1.21661 0.78864 1.01485 0.98800 1.48180 1.07404 1.59973 1.17579 1.20395 0.89096 0.76372 0.82523 1.90686 1.75953 1.48830 1.30060 1.21571 0.91299 1.02960 0.97850 0.86335 1.21579 0.96527 0.95227 1.01372 1.20291 0.92111 1.03217 0.92157 1.21501 0.93584 1.06424 0.92657 1.22148 0.94864 1.07000 0.95438 1.70470 1.25994 1.18423 1.10514 1.25383 0.82137 1.04169 0.98422 1.45501 1.07942 1.45851 1.14558 1.21779 0.75687 1.05127 0.97209 1.21880 0.99180 0.97499 0.82776 1.21687 0.95623 1.00796 0.97361 0.90886 0.95307 0.93890 0.79424 0.94242 0.91482 0.89125 0.92072 0.90243 0.89620 0.89326 0.91436 0.88356 0.87715 0.80418 0.75135 0.88892 0.87143 0.87892 0.90132 0.91652 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.07 9.14 71.98 0.66 -4.42 16 2 C 0.17 5.97 2.47 44.99 0.11 6.09 16 3 H 0.04 1.29 8.08 -2.39 -0.02 1.27 16 4 N -0.73 -33.24 4.41 -322.94 -1.42 -34.66 16 5 C -0.23 -12.01 9.93 84.03 0.83 -11.18 16 6 H 0.07 3.49 7.83 -2.91 -0.02 3.46 16 7 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 8 N -0.97 -56.19 13.06 21.65 0.28 -55.91 16 9 Si 0.96 44.59 29.55 68.60 2.03 46.62 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C -0.08 -2.09 1.79 -10.77 -0.02 -2.11 16 14 C -0.12 -2.41 5.04 30.67 0.15 -2.26 16 15 C 0.11 2.17 6.42 86.36 0.55 2.72 16 16 N -0.60 -11.28 2.98 -819.74 -2.44 -13.72 16 17 C 0.53 10.40 6.78 87.66 0.59 10.99 16 18 O -0.58 -14.91 15.34 -3.01 -0.05 -14.96 16 19 C -0.12 -1.70 1.69 -11.41 -0.02 -1.72 16 20 H 0.12 1.47 6.24 -2.39 -0.01 1.46 16 21 C -0.11 -1.58 5.09 30.80 0.16 -1.42 16 22 C -0.04 -0.53 6.31 30.02 0.19 -0.35 16 23 C -0.03 -0.49 6.57 40.73 0.27 -0.23 16 24 C -0.05 -1.03 11.84 83.30 0.99 -0.04 16 25 N -0.54 -12.86 11.27 -200.96 -2.26 -15.12 16 26 C 0.18 3.33 12.66 180.38 2.28 5.61 16 27 N -0.46 -7.87 3.13 -514.91 -1.61 -9.48 16 28 C 0.12 1.81 6.00 86.47 0.52 2.33 16 29 C 0.11 1.94 6.24 86.22 0.54 2.48 16 30 C -0.12 -2.89 5.20 30.53 0.16 -2.73 16 31 H 0.07 1.81 6.40 -2.38 -0.02 1.79 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.37 18.28 7.58 -92.71 -0.70 17.57 16 35 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.09 1.68 6.36 -2.38 -0.02 1.67 16 38 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.09 1.76 7.03 -2.39 -0.02 1.74 16 41 H 0.09 1.29 8.11 -2.39 -0.02 1.27 16 42 H 0.07 1.11 8.12 -2.39 -0.02 1.09 16 43 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.18 3.13 8.06 -2.91 -0.02 3.10 16 46 H 0.23 2.47 8.06 -2.91 -0.02 2.45 16 47 H 0.09 1.55 7.54 -2.39 -0.02 1.53 16 48 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.10 1.44 5.37 -2.39 -0.01 1.43 16 50 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.06 2.05 7.40 -2.38 -0.02 2.03 16 52 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -68.88 401.64 3.17 -65.71 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.21 Total: 31.18 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 8.43 Total: 0.35 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -7.46 Total: -128.90 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.05 Total: -14.96 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -68.88 3.17 -65.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481332326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.122 kcal (2) G-P(sol) polarization free energy of solvation -68.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds