Wall clock time and date at job start Wed Apr 1 2020 04:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47316 * 2 1 4 4 N 1.46502 * 109.46906 * 239.99556 * 2 1 3 5 5 C 1.36937 * 119.99631 * 85.00149 * 4 2 1 6 6 H 1.07997 * 120.00337 * 0.02562 * 5 4 2 7 7 C 1.38819 * 119.99757 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00097 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99884 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47049 * 60.00688 * 9 7 5 11 11 H 1.48500 * 109.47443 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47632 * 300.00529 * 9 7 5 13 13 C 1.52997 * 109.47092 * 119.99769 * 2 1 3 14 14 C 1.53047 * 109.45913 * 60.02678 * 13 2 1 15 15 C 1.53191 * 109.31159 * 178.60132 * 14 13 2 16 16 N 1.46925 * 108.76745 * 54.65458 * 15 14 13 17 17 C 1.34780 * 120.63267 * 126.40633 * 16 15 14 18 18 O 1.21275 * 119.99897 * 174.77207 * 17 16 15 19 19 C 1.50692 * 119.99659 * 354.76844 * 17 16 15 20 20 H 1.08997 * 109.43087 * 324.59013 * 19 17 16 21 21 C 1.53034 * 109.42384 * 204.70067 * 19 17 16 22 22 C 1.53385 * 109.71863 * 168.18704 * 21 19 17 23 23 C 1.50877 * 108.19521 * 50.53939 * 22 21 19 24 24 C 1.34576 * 128.33124 * 163.42251 * 23 22 21 25 25 N 1.35189 * 107.62353 * 180.13935 * 24 23 22 26 26 H 0.97006 * 126.01066 * 180.02562 * 25 24 23 27 27 N 1.40316 * 107.99307 * 359.96933 * 25 24 23 28 28 C 1.30127 * 108.12228 * 359.95341 * 27 25 24 29 29 C 1.50931 * 128.30345 * 180.22902 * 28 27 25 30 30 C 1.46929 * 118.73736 * 306.38111 * 16 15 14 31 31 C 1.53033 * 109.46326 * 299.97232 * 13 2 1 32 32 H 1.09000 * 109.46782 * 300.00150 * 1 2 3 33 33 H 1.09001 * 109.47140 * 59.99879 * 1 2 3 34 34 H 1.08994 * 109.47712 * 180.02562 * 1 2 3 35 35 H 0.97002 * 120.00162 * 265.00110 * 4 2 1 36 36 H 0.96992 * 119.99972 * 179.97438 * 8 7 5 37 37 H 1.08994 * 109.46112 * 179.97438 * 13 2 1 38 38 H 1.08998 * 109.49778 * 298.56158 * 14 13 2 39 39 H 1.08993 * 109.49852 * 58.65987 * 14 13 2 40 40 H 1.09002 * 109.59736 * 294.86190 * 15 14 13 41 41 H 1.09005 * 109.70616 * 174.50318 * 15 14 13 42 42 H 1.09002 * 109.42855 * 288.26835 * 21 19 17 43 43 H 1.08995 * 109.42477 * 48.16256 * 21 19 17 44 44 H 1.09010 * 109.71691 * 170.21113 * 22 21 19 45 45 H 1.08991 * 109.72072 * 290.81427 * 22 21 19 46 46 H 1.07999 * 126.18776 * 0.12224 * 24 23 22 47 47 H 1.08993 * 109.66666 * 43.49113 * 29 28 27 48 48 H 1.08996 * 109.75610 * 282.85033 * 29 28 27 49 49 H 1.09001 * 109.58960 * 293.82164 * 30 16 15 50 50 H 1.08996 * 109.70283 * 173.46575 * 30 16 15 51 51 H 1.09005 * 109.49927 * 301.33717 * 31 13 2 52 52 H 1.08998 * 109.49871 * 61.43164 * 31 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1490 -0.0076 -2.3757 6 1 1.8926 1.0404 -2.4242 7 6 2.6122 -0.6619 -3.5090 8 7 2.9252 -1.9390 -3.4499 9 14 2.7899 0.2697 -5.1183 10 1 3.7445 1.3928 -4.9373 11 1 3.2989 -0.6487 -6.1684 12 1 1.4672 0.8056 -5.5288 13 6 2.0400 -0.7212 1.2492 14 6 1.5302 -2.1643 1.2487 15 6 2.0713 -2.8932 2.4826 16 7 1.7085 -2.1258 3.6819 17 6 1.0559 -2.7154 4.7031 18 8 0.8457 -2.0980 5.7256 19 6 0.5872 -4.1418 4.5743 20 1 0.2736 -4.3291 3.5474 21 6 -0.5942 -4.3765 5.5182 22 6 -1.2622 -5.7172 5.1879 23 6 -0.1898 -6.7772 5.1340 24 6 -0.3348 -8.1143 5.1806 25 7 0.8985 -8.6627 5.1040 26 1 1.1027 -9.6109 5.1139 27 7 1.8315 -7.6192 5.0061 28 6 1.1814 -6.4921 5.0226 29 6 1.7359 -5.0909 4.9379 30 6 2.0712 -0.7034 3.7469 31 6 1.5303 0.0008 2.4986 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 2.2490 -1.6319 -1.1526 36 1 3.2485 -2.3963 -4.2418 37 1 3.1299 -0.7215 1.2489 38 1 0.4405 -2.1652 1.2742 39 1 1.8739 -2.6712 0.3471 40 1 3.1563 -2.9725 2.4139 41 1 1.6351 -3.8904 2.5412 42 1 -0.2378 -4.3930 6.5482 43 1 -1.3194 -3.5717 5.3984 44 1 -1.9878 -5.9672 5.9620 45 1 -1.7631 -5.6505 4.2222 46 1 -1.2676 -8.6520 5.2644 47 1 2.5065 -5.0473 4.1683 48 1 2.1597 -4.8036 5.9002 49 1 3.1561 -0.6041 3.7813 50 1 1.6347 -0.2533 4.6385 51 1 1.8741 1.0352 2.4868 52 1 0.4406 -0.0207 2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481342073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:42 Heat of formation + Delta-G solvation = 35.574129 kcal Electronic energy + Delta-G solvation = -31230.951051 eV Core-core repulsion = 27231.365543 eV Total energy + Delta-G solvation = -3999.585508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.77721 -40.36752 -38.22557 -36.31879 -35.38081 -32.99714 -32.46266 -31.51133 -30.56176 -30.43198 -28.78880 -28.16460 -25.82014 -24.86805 -23.79898 -23.15669 -22.50822 -21.31128 -21.16044 -19.60542 -18.94277 -18.39997 -17.90548 -17.33277 -16.95613 -15.96702 -15.61240 -15.15994 -14.93388 -14.60087 -14.39394 -14.29742 -14.10628 -13.81960 -13.77993 -13.59811 -13.23070 -13.11670 -12.98007 -12.76123 -12.56803 -12.23984 -12.12744 -11.86991 -11.67319 -11.52293 -11.47297 -11.37026 -11.06111 -10.98865 -10.82628 -10.58060 -10.50651 -10.32339 -10.24992 -10.10075 -9.78207 -9.66148 -9.57145 -9.51862 -8.89183 -8.69035 -8.55744 -6.93951 -5.75918 -3.03507 1.63384 2.43212 2.50520 2.67360 3.00336 3.44138 3.48934 3.49459 4.11521 4.37683 4.49533 4.59084 4.59724 4.79478 4.85689 4.96885 5.07953 5.11139 5.14190 5.18674 5.24164 5.30920 5.34735 5.42642 5.50066 5.54600 5.57166 5.65215 5.69680 5.72893 5.83022 5.85818 5.91362 5.92551 5.99660 6.02419 6.10196 6.17278 6.23331 6.30321 6.32979 6.38438 6.51207 6.59951 6.70265 6.78478 6.94550 7.01103 7.17655 7.40485 7.43183 7.71193 8.16556 8.43815 9.54723 10.13498 10.47918 11.46970 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.002480 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.589180 B =11286.319700 C =12569.256128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.724 5.724 5 C -0.236 4.236 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.935 5.935 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.090 4.090 14 C -0.129 4.129 15 C 0.102 3.898 16 N -0.605 5.605 17 C 0.522 3.478 18 O -0.546 6.546 19 C -0.104 4.104 20 H 0.100 0.900 21 C -0.097 4.097 22 C -0.041 4.041 23 C -0.235 4.235 24 C 0.060 3.940 25 N -0.485 5.485 26 H 0.439 0.561 27 N -0.285 5.285 28 C 0.087 3.913 29 C -0.028 4.028 30 C 0.112 3.888 31 C -0.128 4.128 32 H 0.037 0.963 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.176 0.824 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.073 0.927 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.135 -10.484 20.243 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.367 5.367 5 C -0.367 4.367 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.584 5.584 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.167 4.167 15 C -0.021 4.021 16 N -0.338 5.338 17 C 0.310 3.690 18 O -0.423 6.423 19 C -0.125 4.125 20 H 0.118 0.882 21 C -0.135 4.135 22 C -0.080 4.080 23 C -0.246 4.246 24 C -0.085 4.085 25 N -0.193 5.193 26 H 0.283 0.717 27 N -0.108 5.108 28 C -0.082 4.082 29 C -0.067 4.067 30 C -0.010 4.010 31 C -0.166 4.166 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.193 0.807 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.083 0.917 50 H 0.106 0.894 51 H 0.092 0.908 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.083 -10.588 20.559 23.912 hybrid contribution -0.516 -0.164 -1.165 1.285 sum -6.599 -10.751 19.394 23.136 Atomic orbital electron populations 1.22528 0.99608 1.00797 0.99713 1.20190 0.91727 0.95173 0.86118 0.93681 1.42483 1.78164 1.10704 1.05307 1.19204 1.36219 0.93822 0.87460 0.91367 1.24707 1.02356 0.95982 0.97974 1.69633 1.51152 1.08632 1.28936 0.86299 0.77735 0.78614 0.83725 1.21348 1.21766 1.21383 1.21382 1.00355 0.94523 0.94635 1.21985 1.01252 0.96331 0.97120 1.21963 1.00593 0.95111 0.84421 1.48178 1.56804 1.11028 1.17746 1.20459 0.77231 0.88513 0.82821 1.90668 1.57044 1.65871 1.28762 1.21360 0.96874 0.91569 1.02736 0.88173 1.21381 0.95861 0.96803 0.99414 1.20031 0.94665 0.91414 1.01844 1.20148 0.95082 0.93703 1.15679 1.22070 0.90304 0.94261 1.01909 1.46330 1.03907 1.08793 1.60313 0.71722 1.77039 1.14833 0.94604 1.24299 1.22156 0.92479 0.94427 0.99130 1.19990 0.96598 0.86379 1.03742 1.21626 0.99829 0.80146 0.99423 1.22012 1.01478 0.99303 0.93854 0.94409 0.93204 0.93359 0.78196 0.93542 0.91070 0.91329 0.89606 0.91005 0.89771 0.90794 0.90809 0.90801 0.90934 0.80689 0.89225 0.89135 0.91663 0.89390 0.90843 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 8.79 37.16 0.33 -2.58 16 2 C 0.18 3.34 2.72 -67.93 -0.18 3.15 16 3 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 4 N -0.72 -17.32 5.04 -53.43 -0.27 -17.59 16 5 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 9 Si 0.90 22.20 29.55 -169.99 -5.02 17.18 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C -0.09 -1.35 2.14 -90.58 -0.19 -1.54 16 14 C -0.13 -1.80 4.81 -26.61 -0.13 -1.93 16 15 C 0.10 1.17 5.92 -3.71 -0.02 1.14 16 16 N -0.60 -7.29 2.97 -172.77 -0.51 -7.81 16 17 C 0.52 6.55 6.75 -10.99 -0.07 6.48 16 18 O -0.55 -8.48 15.70 5.56 0.09 -8.39 16 19 C -0.10 -1.04 1.61 -91.56 -0.15 -1.19 16 20 H 0.10 0.95 6.48 -51.93 -0.34 0.62 16 21 C -0.10 -0.91 4.57 -26.51 -0.12 -1.03 16 22 C -0.04 -0.32 6.28 -27.60 -0.17 -0.49 16 23 C -0.23 -2.14 5.89 -104.98 -0.62 -2.76 16 24 C 0.06 0.44 11.95 -17.37 -0.21 0.23 16 25 N -0.48 -3.93 7.37 30.35 0.22 -3.71 16 26 H 0.44 2.11 8.96 -182.43 -1.64 0.48 16 27 N -0.29 -3.29 12.68 33.75 0.43 -2.87 16 28 C 0.09 0.94 7.10 -82.35 -0.58 0.36 16 29 C -0.03 -0.28 5.41 -27.57 -0.15 -0.43 16 30 C 0.11 1.36 6.41 -3.71 -0.02 1.33 16 31 C -0.13 -1.62 4.96 -26.61 -0.13 -1.75 16 32 H 0.04 0.56 6.46 -51.93 -0.34 0.22 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.84 6.46 -51.93 -0.34 0.51 16 35 H 0.38 9.58 6.04 -40.82 -0.25 9.33 16 36 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.97 6.51 -51.93 -0.34 0.63 16 39 H 0.09 1.39 6.46 -51.93 -0.34 1.06 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.84 4.95 -51.93 -0.26 0.58 16 42 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 43 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 44 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 47 H 0.09 0.86 7.27 -51.93 -0.38 0.48 16 48 H 0.09 0.93 8.12 -51.93 -0.42 0.51 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 50 H 0.09 1.12 7.05 -51.93 -0.37 0.75 16 51 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 52 H 0.07 0.91 6.51 -51.93 -0.34 0.57 16 LS Contribution 395.18 15.07 5.96 5.96 Total: -1.00 -33.55 395.18 -10.58 -44.13 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -9.51 Total: 8.07 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -2.68 Total: -8.06 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.59 Total: -58.89 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.55 -10.58 -44.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481342073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.706 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds