Wall clock time and date at job start Wed Apr 1 2020 04:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47316 * 2 1 4 4 N 1.46502 * 109.46906 * 239.99556 * 2 1 3 5 5 C 1.36937 * 119.99631 * 85.00149 * 4 2 1 6 6 H 1.07997 * 120.00337 * 0.02562 * 5 4 2 7 7 C 1.38819 * 119.99757 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00097 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99884 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47049 * 60.00688 * 9 7 5 11 11 H 1.48500 * 109.47443 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47632 * 300.00529 * 9 7 5 13 13 C 1.52997 * 109.47092 * 119.99769 * 2 1 3 14 14 C 1.53047 * 109.45913 * 60.02678 * 13 2 1 15 15 C 1.53191 * 109.31159 * 178.60132 * 14 13 2 16 16 N 1.46925 * 108.76745 * 54.65458 * 15 14 13 17 17 C 1.34780 * 120.63267 * 126.40633 * 16 15 14 18 18 O 1.21275 * 119.99897 * 174.77207 * 17 16 15 19 19 C 1.50692 * 119.99659 * 354.76844 * 17 16 15 20 20 H 1.08997 * 109.43087 * 324.59013 * 19 17 16 21 21 C 1.53034 * 109.42384 * 204.70067 * 19 17 16 22 22 C 1.53385 * 109.71863 * 168.18704 * 21 19 17 23 23 C 1.50877 * 108.19521 * 50.53939 * 22 21 19 24 24 C 1.34576 * 128.33124 * 163.42251 * 23 22 21 25 25 N 1.35189 * 107.62353 * 180.13935 * 24 23 22 26 26 H 0.97006 * 126.01066 * 180.02562 * 25 24 23 27 27 N 1.40316 * 107.99307 * 359.96933 * 25 24 23 28 28 C 1.30127 * 108.12228 * 359.95341 * 27 25 24 29 29 C 1.50931 * 128.30345 * 180.22902 * 28 27 25 30 30 C 1.46929 * 118.73736 * 306.38111 * 16 15 14 31 31 C 1.53033 * 109.46326 * 299.97232 * 13 2 1 32 32 H 1.09000 * 109.46782 * 300.00150 * 1 2 3 33 33 H 1.09001 * 109.47140 * 59.99879 * 1 2 3 34 34 H 1.08994 * 109.47712 * 180.02562 * 1 2 3 35 35 H 0.97002 * 120.00162 * 265.00110 * 4 2 1 36 36 H 0.96992 * 119.99972 * 179.97438 * 8 7 5 37 37 H 1.08994 * 109.46112 * 179.97438 * 13 2 1 38 38 H 1.08998 * 109.49778 * 298.56158 * 14 13 2 39 39 H 1.08993 * 109.49852 * 58.65987 * 14 13 2 40 40 H 1.09002 * 109.59736 * 294.86190 * 15 14 13 41 41 H 1.09005 * 109.70616 * 174.50318 * 15 14 13 42 42 H 1.09002 * 109.42855 * 288.26835 * 21 19 17 43 43 H 1.08995 * 109.42477 * 48.16256 * 21 19 17 44 44 H 1.09010 * 109.71691 * 170.21113 * 22 21 19 45 45 H 1.08991 * 109.72072 * 290.81427 * 22 21 19 46 46 H 1.07999 * 126.18776 * 0.12224 * 24 23 22 47 47 H 1.08993 * 109.66666 * 43.49113 * 29 28 27 48 48 H 1.08996 * 109.75610 * 282.85033 * 29 28 27 49 49 H 1.09001 * 109.58960 * 293.82164 * 30 16 15 50 50 H 1.08996 * 109.70283 * 173.46575 * 30 16 15 51 51 H 1.09005 * 109.49927 * 301.33717 * 31 13 2 52 52 H 1.08998 * 109.49871 * 61.43164 * 31 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1490 -0.0076 -2.3757 6 1 1.8926 1.0404 -2.4242 7 6 2.6122 -0.6619 -3.5090 8 7 2.9252 -1.9390 -3.4499 9 14 2.7899 0.2697 -5.1183 10 1 3.7445 1.3928 -4.9373 11 1 3.2989 -0.6487 -6.1684 12 1 1.4672 0.8056 -5.5288 13 6 2.0400 -0.7212 1.2492 14 6 1.5302 -2.1643 1.2487 15 6 2.0713 -2.8932 2.4826 16 7 1.7085 -2.1258 3.6819 17 6 1.0559 -2.7154 4.7031 18 8 0.8457 -2.0980 5.7256 19 6 0.5872 -4.1418 4.5743 20 1 0.2736 -4.3291 3.5474 21 6 -0.5942 -4.3765 5.5182 22 6 -1.2622 -5.7172 5.1879 23 6 -0.1898 -6.7772 5.1340 24 6 -0.3348 -8.1143 5.1806 25 7 0.8985 -8.6627 5.1040 26 1 1.1027 -9.6109 5.1139 27 7 1.8315 -7.6192 5.0061 28 6 1.1814 -6.4921 5.0226 29 6 1.7359 -5.0909 4.9379 30 6 2.0712 -0.7034 3.7469 31 6 1.5303 0.0008 2.4986 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 2.2490 -1.6319 -1.1526 36 1 3.2485 -2.3963 -4.2418 37 1 3.1299 -0.7215 1.2489 38 1 0.4405 -2.1652 1.2742 39 1 1.8739 -2.6712 0.3471 40 1 3.1563 -2.9725 2.4139 41 1 1.6351 -3.8904 2.5412 42 1 -0.2378 -4.3930 6.5482 43 1 -1.3194 -3.5717 5.3984 44 1 -1.9878 -5.9672 5.9620 45 1 -1.7631 -5.6505 4.2222 46 1 -1.2676 -8.6520 5.2644 47 1 2.5065 -5.0473 4.1683 48 1 2.1597 -4.8036 5.9002 49 1 3.1561 -0.6041 3.7813 50 1 1.6347 -0.2533 4.6385 51 1 1.8741 1.0352 2.4868 52 1 0.4406 -0.0207 2.5121 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481342073.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:40 Heat of formation + Delta-G solvation = 14.802264 kcal Electronic energy + Delta-G solvation = -31231.851787 eV Core-core repulsion = 27231.365543 eV Total energy + Delta-G solvation = -4000.486244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.46120 -41.36232 -39.42698 -37.17202 -36.78277 -34.64232 -33.23988 -32.61475 -31.92753 -31.37134 -29.84164 -29.43112 -26.91263 -26.14211 -25.21816 -24.30365 -23.48651 -22.31583 -21.93911 -20.68970 -19.80646 -19.50450 -19.22783 -18.55696 -17.99679 -16.96649 -16.67626 -16.44593 -16.05435 -15.84300 -15.49297 -15.39066 -15.31084 -15.05163 -14.79741 -14.55079 -14.25573 -14.20204 -14.06351 -13.78909 -13.70586 -13.52062 -13.03794 -12.93787 -12.89075 -12.85179 -12.73113 -12.60777 -12.33012 -12.21218 -12.18015 -11.99598 -11.77635 -11.71916 -11.56278 -11.21915 -11.20109 -11.08523 -10.85541 -10.62956 -10.36453 -9.61398 -9.30999 -8.93528 -7.89773 -5.15823 1.00559 1.48720 1.50474 1.55988 1.56420 1.79071 1.95855 2.11511 2.59385 3.33747 3.43573 3.61407 3.74935 3.80743 3.83661 3.93060 3.96274 4.10603 4.17760 4.27031 4.30675 4.41089 4.41444 4.45891 4.47920 4.58424 4.61980 4.68388 4.70005 4.77441 4.80040 4.88003 4.92180 4.98381 4.99837 5.03192 5.06962 5.13860 5.17461 5.22977 5.28203 5.31317 5.37698 5.41254 5.46476 5.56853 5.64534 5.71844 5.75571 6.33874 6.43316 6.52145 6.74678 7.16885 7.40335 8.19625 8.42478 9.33489 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.002480 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.589180 B =11286.319700 C =12569.256128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.172 3.828 3 H 0.037 0.963 4 N -0.735 5.735 5 C -0.235 4.235 6 H 0.070 0.930 7 C -0.075 4.075 8 N -0.968 5.968 9 Si 0.966 3.034 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.281 1.281 13 C -0.080 4.080 14 C -0.122 4.122 15 C 0.110 3.890 16 N -0.604 5.604 17 C 0.522 3.478 18 O -0.577 6.577 19 C -0.095 4.095 20 H 0.109 0.891 21 C -0.094 4.094 22 C -0.033 4.033 23 C -0.258 4.258 24 C 0.076 3.924 25 N -0.479 5.479 26 H 0.451 0.549 27 N -0.327 5.327 28 C 0.071 3.929 29 C -0.024 4.024 30 C 0.113 3.887 31 C -0.117 4.117 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.046 0.954 35 H 0.375 0.625 36 H 0.249 0.751 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.217 0.783 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.085 0.915 51 H 0.084 0.916 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 -10.931 21.109 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.063 3.937 3 H 0.055 0.945 4 N -0.376 5.376 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.267 4.267 8 N -0.619 5.619 9 Si 0.795 3.205 10 H -0.207 1.207 11 H -0.223 1.223 12 H -0.208 1.208 13 C -0.099 4.099 14 C -0.160 4.160 15 C -0.013 4.013 16 N -0.336 5.336 17 C 0.311 3.689 18 O -0.457 6.457 19 C -0.117 4.117 20 H 0.127 0.873 21 C -0.132 4.132 22 C -0.071 4.071 23 C -0.269 4.269 24 C -0.070 4.070 25 N -0.189 5.189 26 H 0.298 0.702 27 N -0.151 5.151 28 C -0.097 4.097 29 C -0.063 4.063 30 C -0.009 4.009 31 C -0.155 4.155 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.209 0.791 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.120 0.880 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.110 0.890 45 H 0.099 0.901 46 H 0.234 0.766 47 H 0.109 0.891 48 H 0.100 0.900 49 H 0.092 0.908 50 H 0.104 0.896 51 H 0.103 0.897 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.452 -11.010 21.448 25.234 hybrid contribution -0.114 -0.022 -1.357 1.362 sum -7.566 -11.032 20.091 24.137 Atomic orbital electron populations 1.22371 0.98160 1.00873 1.00136 1.20420 0.92585 0.94729 0.85921 0.94472 1.42677 1.78364 1.10515 1.06075 1.19561 1.34484 0.94036 0.88626 0.91166 1.25436 1.03354 0.96871 1.01079 1.69780 1.52864 1.09988 1.29282 0.85325 0.77782 0.77382 0.79969 1.20667 1.22347 1.20766 1.21237 0.99687 0.95093 0.93930 1.21871 1.01228 0.95657 0.97283 1.21914 1.00922 0.95457 0.82982 1.48225 1.56493 1.11110 1.17730 1.20858 0.76520 0.89253 0.82232 1.90653 1.58265 1.66816 1.29935 1.21324 0.97134 0.89794 1.03423 0.87317 1.21354 0.95481 0.97919 0.98469 1.20005 0.94417 0.89815 1.02863 1.20417 0.94607 0.94954 1.16924 1.22703 0.91133 0.93900 0.99311 1.46395 1.03904 1.09087 1.59511 0.70221 1.76952 1.16562 0.95577 1.25981 1.22282 0.93545 0.94306 0.99583 1.19910 0.96530 0.86549 1.03312 1.21614 1.00332 0.80146 0.98820 1.21913 1.01360 0.99654 0.92603 0.91364 0.95324 0.93449 0.79092 0.94202 0.92068 0.91207 0.92001 0.90513 0.87996 0.92071 0.91129 0.89030 0.90121 0.76629 0.89139 0.89994 0.90828 0.89634 0.89726 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 8.79 71.98 0.63 -4.64 16 2 C 0.17 6.36 2.72 44.99 0.12 6.49 16 3 H 0.04 1.44 8.08 -2.39 -0.02 1.42 16 4 N -0.73 -35.47 5.04 -322.95 -1.63 -37.10 16 5 C -0.23 -12.81 9.93 84.04 0.83 -11.98 16 6 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 7 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 8 N -0.97 -58.18 13.06 21.65 0.28 -57.90 16 9 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 11 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 13 C -0.08 -2.34 2.14 -10.77 -0.02 -2.37 16 14 C -0.12 -3.34 4.81 30.67 0.15 -3.19 16 15 C 0.11 2.39 5.92 86.36 0.51 2.90 16 16 N -0.60 -13.81 2.97 -818.91 -2.43 -16.24 16 17 C 0.52 12.63 6.75 87.65 0.59 13.22 16 18 O -0.58 -17.62 15.70 -3.01 -0.05 -17.67 16 19 C -0.10 -1.82 1.61 -11.40 -0.02 -1.84 16 20 H 0.11 1.89 6.48 -2.39 -0.02 1.88 16 21 C -0.09 -1.66 4.57 30.73 0.14 -1.52 16 22 C -0.03 -0.43 6.28 30.03 0.19 -0.24 16 23 C -0.26 -4.19 5.89 -20.10 -0.12 -4.31 16 24 C 0.08 0.88 11.95 83.34 1.00 1.88 16 25 N -0.48 -6.90 7.37 -57.89 -0.43 -7.32 16 26 H 0.45 3.53 8.96 -213.17 -1.91 1.62 16 27 N -0.33 -7.33 12.68 -47.15 -0.60 -7.93 16 28 C 0.07 1.47 7.10 43.43 0.31 1.78 16 29 C -0.02 -0.46 5.41 30.05 0.16 -0.30 16 30 C 0.11 2.57 6.41 86.36 0.55 3.13 16 31 C -0.12 -2.75 4.96 30.67 0.15 -2.60 16 32 H 0.07 1.88 6.46 -2.39 -0.02 1.87 16 33 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 1.60 6.46 -2.39 -0.02 1.58 16 35 H 0.38 19.16 6.04 -92.71 -0.56 18.60 16 36 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 1.89 6.51 -2.39 -0.02 1.87 16 39 H 0.06 2.03 6.46 -2.39 -0.02 2.01 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 41 H 0.10 1.89 4.95 -2.38 -0.01 1.88 16 42 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 43 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 44 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.22 0.55 8.06 -2.91 -0.02 0.52 16 47 H 0.09 1.70 7.27 -2.39 -0.02 1.69 16 48 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 49 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.09 2.05 7.05 -2.39 -0.02 2.04 16 51 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 52 H 0.07 1.67 6.51 -2.39 -0.02 1.66 16 Total: -1.00 -72.82 395.18 1.31 -71.52 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: -1.52 Total: 32.07 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.65 Total: -7.38 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -4.80 Total: -126.49 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.05 Total: -17.67 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -72.82 1.31 -71.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481342073.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.320 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds