Wall clock time and date at job start Wed Apr 1 2020 04:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46994 * 2 1 4 4 N 1.46499 * 109.46776 * 240.00040 * 2 1 3 5 5 C 1.36939 * 119.99950 * 85.00414 * 4 2 1 6 6 H 1.08002 * 119.99996 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00001 * 179.97438 * 5 4 2 8 8 N 1.31623 * 119.99720 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00038 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47176 * 270.00235 * 9 7 5 11 11 H 1.48499 * 109.47176 * 30.00141 * 9 7 5 12 12 H 1.48500 * 109.47138 * 150.00355 * 9 7 5 13 13 C 1.53003 * 109.46920 * 120.00339 * 2 1 3 14 14 C 1.53040 * 109.45915 * 60.02931 * 13 2 1 15 15 C 1.53193 * 109.31028 * 178.60050 * 14 13 2 16 16 N 1.46929 * 108.76731 * 54.65002 * 15 14 13 17 17 C 1.34777 * 120.63085 * 126.40455 * 16 15 14 18 18 O 1.21277 * 119.99848 * 355.58919 * 17 16 15 19 19 C 1.50693 * 119.99783 * 175.58522 * 17 16 15 20 20 H 1.08997 * 109.42908 * 37.73021 * 19 17 16 21 21 C 1.53030 * 109.42412 * 157.55408 * 19 17 16 22 22 C 1.53377 * 109.73309 * 191.78587 * 21 19 17 23 23 C 1.50883 * 108.19801 * 309.45987 * 22 21 19 24 24 C 1.34574 * 128.32803 * 196.68057 * 23 22 21 25 25 N 1.35194 * 107.61728 * 179.83716 * 24 23 22 26 26 H 0.97002 * 126.00220 * 180.02562 * 25 24 23 27 27 N 1.40317 * 107.99311 * 0.03476 * 25 24 23 28 28 C 1.30125 * 108.12410 * 0.03424 * 27 25 24 29 29 C 1.50949 * 128.28730 * 179.86644 * 28 27 25 30 30 C 1.46927 * 118.73754 * 306.38516 * 16 15 14 31 31 C 1.53039 * 109.46026 * 299.96728 * 13 2 1 32 32 H 1.09000 * 109.47116 * 299.99954 * 1 2 3 33 33 H 1.08996 * 109.47379 * 59.99831 * 1 2 3 34 34 H 1.09004 * 109.47490 * 179.97438 * 1 2 3 35 35 H 0.97001 * 120.00446 * 264.99649 * 4 2 1 36 36 H 0.97005 * 119.99820 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.45465 * 179.97438 * 13 2 1 38 38 H 1.08996 * 109.49400 * 298.55814 * 14 13 2 39 39 H 1.08994 * 109.50217 * 58.65965 * 14 13 2 40 40 H 1.09005 * 109.59663 * 294.86835 * 15 14 13 41 41 H 1.08999 * 109.70600 * 174.50249 * 15 14 13 42 42 H 1.09003 * 109.42476 * 311.87330 * 21 19 17 43 43 H 1.09002 * 109.42879 * 71.71196 * 21 19 17 44 44 H 1.08998 * 109.72768 * 189.77208 * 22 21 19 45 45 H 1.09001 * 109.74056 * 69.15135 * 22 21 19 46 46 H 1.08000 * 126.18741 * 359.86388 * 24 23 22 47 47 H 1.08998 * 109.71155 * 77.06678 * 29 28 27 48 48 H 1.08999 * 109.75215 * 316.43687 * 29 28 27 49 49 H 1.08992 * 109.59087 * 293.81931 * 30 16 15 50 50 H 1.09003 * 109.70433 * 173.46171 * 30 16 15 51 51 H 1.08991 * 109.49823 * 301.34441 * 31 13 2 52 52 H 1.09001 * 109.49391 * 61.40522 * 31 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6122 -0.6617 -3.5091 8 7 2.7375 -0.0051 -4.6429 9 14 3.0577 -2.4738 -3.4249 10 1 4.4905 -2.6149 -3.0610 11 1 2.2181 -3.1428 -2.3988 12 1 2.8186 -3.1042 -4.7480 13 6 2.0400 -0.7213 1.2492 14 6 1.5303 -2.1644 1.2485 15 6 2.0714 -2.8934 2.4824 16 7 1.7086 -2.1261 3.6817 17 6 1.0559 -2.7158 4.7029 18 8 0.6918 -3.8684 4.6048 19 6 0.7787 -1.9429 5.9665 20 1 0.5315 -0.9118 5.7139 21 6 -0.3998 -2.5810 6.7052 22 6 -0.8772 -1.6464 7.8237 23 6 0.3230 -1.2402 8.6427 24 6 0.3482 -0.6952 9.8729 25 7 1.6436 -0.5031 10.2089 26 1 1.9665 -0.1244 11.0415 27 7 2.4387 -0.9476 9.1416 28 6 1.6498 -1.3871 8.2048 29 6 2.0242 -1.9643 6.8612 30 6 2.0712 -0.7037 3.7469 31 6 1.5304 0.0007 2.4987 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 2.2490 -1.6318 -1.1527 36 1 3.0615 -0.4622 -5.4348 37 1 3.1300 -0.7216 1.2488 38 1 0.4406 -2.1652 1.2740 39 1 1.8740 -2.6712 0.3469 40 1 3.1564 -2.9726 2.4137 41 1 1.6352 -3.8906 2.5408 42 1 -1.2162 -2.7543 6.0040 43 1 -0.0856 -3.5315 7.1365 44 1 -1.5954 -2.1673 8.4569 45 1 -1.3433 -0.7615 7.3902 46 1 -0.5109 -0.4553 10.4818 47 1 2.3700 -2.9905 6.9854 48 1 2.8125 -1.3628 6.4086 49 1 3.1561 -0.6044 3.7812 50 1 1.6346 -0.2536 4.6384 51 1 1.8741 1.0349 2.4868 52 1 0.4406 -0.0203 2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481342075.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:47 Heat of formation + Delta-G solvation = 40.461970 kcal Electronic energy + Delta-G solvation = -31152.697176 eV Core-core repulsion = 27153.323621 eV Total energy + Delta-G solvation = -3999.373555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.88732 -40.46832 -38.36357 -36.41136 -35.56298 -32.98906 -32.56150 -31.59868 -31.01106 -30.46987 -28.90269 -28.60508 -25.92741 -24.94738 -23.71560 -23.39428 -22.25190 -21.41509 -21.31875 -19.72303 -19.00759 -18.56192 -18.04150 -17.73756 -17.05802 -16.10402 -15.71184 -15.27625 -14.86959 -14.76084 -14.62104 -14.40089 -14.17437 -13.95930 -13.85962 -13.53165 -13.46577 -13.18096 -13.01500 -12.93129 -12.62845 -12.39735 -12.29545 -12.07769 -11.80115 -11.59636 -11.54738 -11.44888 -11.35276 -11.09712 -10.90129 -10.68930 -10.61745 -10.41313 -10.31108 -10.11992 -9.77341 -9.76233 -9.71947 -9.52346 -8.91609 -8.80260 -8.65731 -7.24609 -5.75338 -3.10123 1.51970 2.32402 2.39268 2.58559 2.89774 3.38090 3.40453 3.46467 4.01153 4.26090 4.38724 4.47691 4.60313 4.63942 4.71192 4.84666 4.93477 4.97618 5.01447 5.06368 5.14941 5.19203 5.24362 5.30735 5.36491 5.43362 5.49271 5.52602 5.56299 5.61499 5.64973 5.75388 5.81347 5.83194 5.86558 5.88793 6.01370 6.04492 6.09233 6.19046 6.21178 6.27448 6.37565 6.46848 6.57480 6.63896 6.82782 6.89844 7.08615 7.29200 7.33646 8.01992 8.08623 8.44122 9.23262 9.95958 10.15910 11.43210 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.002200 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.101370 B =12722.590777 C =12987.690109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.183 3.817 3 H 0.054 0.946 4 N -0.749 5.749 5 C -0.239 4.239 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.277 1.277 12 H -0.292 1.292 13 C -0.094 4.094 14 C -0.129 4.129 15 C 0.110 3.890 16 N -0.605 5.605 17 C 0.520 3.480 18 O -0.541 6.541 19 C -0.103 4.103 20 H 0.099 0.901 21 C -0.098 4.098 22 C -0.041 4.041 23 C -0.235 4.235 24 C 0.061 3.939 25 N -0.485 5.485 26 H 0.439 0.561 27 N -0.286 5.286 28 C 0.086 3.914 29 C -0.026 4.026 30 C 0.103 3.897 31 C -0.129 4.129 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.360 0.640 36 H 0.259 0.741 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.176 0.824 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.071 0.929 50 H 0.085 0.915 51 H 0.077 0.923 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 -0.909 31.942 32.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.074 3.926 3 H 0.072 0.928 4 N -0.392 5.392 5 C -0.369 4.369 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.583 5.583 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.203 1.203 12 H -0.218 1.218 13 C -0.113 4.113 14 C -0.167 4.167 15 C -0.012 4.012 16 N -0.338 5.338 17 C 0.308 3.692 18 O -0.418 6.418 19 C -0.125 4.125 20 H 0.117 0.883 21 C -0.136 4.136 22 C -0.079 4.079 23 C -0.246 4.246 24 C -0.085 4.085 25 N -0.193 5.193 26 H 0.283 0.717 27 N -0.108 5.108 28 C -0.082 4.082 29 C -0.066 4.066 30 C -0.020 4.020 31 C -0.168 4.168 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.194 0.806 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.193 0.807 47 H 0.109 0.891 48 H 0.107 0.893 49 H 0.089 0.911 50 H 0.103 0.897 51 H 0.095 0.905 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.591 -1.155 32.040 32.388 hybrid contribution -0.301 -1.024 0.094 1.072 sum -4.891 -2.179 32.134 32.577 Atomic orbital electron populations 1.22507 0.99147 1.00884 1.00208 1.20159 0.91901 0.95400 0.85118 0.92753 1.42858 1.79813 1.09391 1.07185 1.19078 1.36569 0.95494 0.85805 0.89285 1.24670 1.01639 0.97412 0.95602 1.69703 1.52830 1.35540 1.00263 0.86586 0.78429 0.86882 0.76825 1.21124 1.20325 1.21809 1.21438 1.00467 0.94576 0.94845 1.21990 1.01623 0.96089 0.97024 1.21692 0.99789 0.96118 0.83636 1.48157 1.57064 1.10979 1.17649 1.20466 0.77151 0.87182 0.84401 1.90688 1.51533 1.17863 1.81760 1.21360 0.96968 1.01287 0.92838 0.88263 1.21392 0.96576 0.98766 0.96877 1.20030 0.93610 0.98964 0.95325 1.20158 0.95670 1.12083 0.96711 1.22084 0.88456 1.00765 0.97219 1.46337 1.04029 1.52099 1.16880 0.71702 1.77036 1.18157 1.19316 0.96321 1.22162 0.91719 0.98439 0.95909 1.19952 0.96703 1.01821 0.88080 1.21894 1.00509 0.80201 0.99380 1.22008 1.01650 0.99419 0.93689 0.94122 0.92698 0.93436 0.80607 0.93135 0.90910 0.91069 0.90573 0.91535 0.89187 0.90682 0.90770 0.90749 0.90989 0.80657 0.89135 0.89306 0.91114 0.89724 0.90454 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 8.79 37.16 0.33 -2.50 16 2 C 0.18 3.30 2.72 -67.93 -0.18 3.11 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 N -0.75 -17.08 4.85 -53.42 -0.26 -17.34 16 5 C -0.24 -6.64 10.41 -15.06 -0.16 -6.79 16 6 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 7 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 8 N -0.94 -29.31 13.97 55.49 0.78 -28.54 16 9 Si 0.88 22.06 27.74 -169.99 -4.71 17.35 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 12 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 13 C -0.09 -1.32 2.14 -90.58 -0.19 -1.51 16 14 C -0.13 -1.82 4.81 -26.61 -0.13 -1.95 16 15 C 0.11 1.38 6.44 -3.71 -0.02 1.36 16 16 N -0.61 -6.77 2.97 -172.77 -0.51 -7.28 16 17 C 0.52 6.13 6.78 -10.99 -0.07 6.05 16 18 O -0.54 -8.30 15.62 5.56 0.09 -8.22 16 19 C -0.10 -0.90 1.64 -91.57 -0.15 -1.05 16 20 H 0.10 0.74 6.17 -51.93 -0.32 0.42 16 21 C -0.10 -0.83 4.56 -26.52 -0.12 -0.95 16 22 C -0.04 -0.27 6.28 -27.60 -0.17 -0.44 16 23 C -0.23 -1.83 5.89 -104.98 -0.62 -2.45 16 24 C 0.06 0.36 11.95 -17.37 -0.21 0.15 16 25 N -0.48 -3.28 7.37 30.35 0.22 -3.05 16 26 H 0.44 1.55 8.96 -182.43 -1.64 -0.09 16 27 N -0.29 -2.90 12.68 33.75 0.43 -2.47 16 28 C 0.09 0.82 7.10 -82.35 -0.58 0.23 16 29 C -0.03 -0.23 5.54 -27.57 -0.15 -0.38 16 30 C 0.10 0.93 6.02 -3.71 -0.02 0.91 16 31 C -0.13 -1.38 4.97 -26.61 -0.13 -1.51 16 32 H 0.04 0.56 6.46 -51.93 -0.34 0.23 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.80 6.46 -51.93 -0.34 0.47 16 35 H 0.36 8.10 3.90 -40.82 -0.16 7.94 16 36 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.04 6.51 -51.93 -0.34 0.71 16 39 H 0.08 1.21 6.46 -51.93 -0.34 0.87 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.09 1.23 7.00 -51.93 -0.36 0.87 16 42 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 43 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.18 0.40 8.06 -52.49 -0.42 -0.03 16 47 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 48 H 0.09 0.71 7.87 -51.93 -0.41 0.30 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.08 0.60 5.42 -51.93 -0.28 0.32 16 51 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.07 0.79 6.51 -51.93 -0.34 0.45 16 LS Contribution 392.97 15.07 5.92 5.92 Total: -1.00 -35.20 392.97 -10.25 -45.45 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -9.50 Total: 5.92 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.69 Total: -7.74 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.65 Total: -58.68 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.20 -10.25 -45.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481342075.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.908 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds