Wall clock time and date at job start Wed Apr 1 2020 04:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46994 * 2 1 4 4 N 1.46499 * 109.46776 * 240.00040 * 2 1 3 5 5 C 1.36939 * 119.99950 * 85.00414 * 4 2 1 6 6 H 1.08002 * 119.99996 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00001 * 179.97438 * 5 4 2 8 8 N 1.31623 * 119.99720 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00038 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47176 * 270.00235 * 9 7 5 11 11 H 1.48499 * 109.47176 * 30.00141 * 9 7 5 12 12 H 1.48500 * 109.47138 * 150.00355 * 9 7 5 13 13 C 1.53003 * 109.46920 * 120.00339 * 2 1 3 14 14 C 1.53040 * 109.45915 * 60.02931 * 13 2 1 15 15 C 1.53193 * 109.31028 * 178.60050 * 14 13 2 16 16 N 1.46929 * 108.76731 * 54.65002 * 15 14 13 17 17 C 1.34777 * 120.63085 * 126.40455 * 16 15 14 18 18 O 1.21277 * 119.99848 * 355.58919 * 17 16 15 19 19 C 1.50693 * 119.99783 * 175.58522 * 17 16 15 20 20 H 1.08997 * 109.42908 * 37.73021 * 19 17 16 21 21 C 1.53030 * 109.42412 * 157.55408 * 19 17 16 22 22 C 1.53377 * 109.73309 * 191.78587 * 21 19 17 23 23 C 1.50883 * 108.19801 * 309.45987 * 22 21 19 24 24 C 1.34574 * 128.32803 * 196.68057 * 23 22 21 25 25 N 1.35194 * 107.61728 * 179.83716 * 24 23 22 26 26 H 0.97002 * 126.00220 * 180.02562 * 25 24 23 27 27 N 1.40317 * 107.99311 * 0.03476 * 25 24 23 28 28 C 1.30125 * 108.12410 * 0.03424 * 27 25 24 29 29 C 1.50949 * 128.28730 * 179.86644 * 28 27 25 30 30 C 1.46927 * 118.73754 * 306.38516 * 16 15 14 31 31 C 1.53039 * 109.46026 * 299.96728 * 13 2 1 32 32 H 1.09000 * 109.47116 * 299.99954 * 1 2 3 33 33 H 1.08996 * 109.47379 * 59.99831 * 1 2 3 34 34 H 1.09004 * 109.47490 * 179.97438 * 1 2 3 35 35 H 0.97001 * 120.00446 * 264.99649 * 4 2 1 36 36 H 0.97005 * 119.99820 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.45465 * 179.97438 * 13 2 1 38 38 H 1.08996 * 109.49400 * 298.55814 * 14 13 2 39 39 H 1.08994 * 109.50217 * 58.65965 * 14 13 2 40 40 H 1.09005 * 109.59663 * 294.86835 * 15 14 13 41 41 H 1.08999 * 109.70600 * 174.50249 * 15 14 13 42 42 H 1.09003 * 109.42476 * 311.87330 * 21 19 17 43 43 H 1.09002 * 109.42879 * 71.71196 * 21 19 17 44 44 H 1.08998 * 109.72768 * 189.77208 * 22 21 19 45 45 H 1.09001 * 109.74056 * 69.15135 * 22 21 19 46 46 H 1.08000 * 126.18741 * 359.86388 * 24 23 22 47 47 H 1.08998 * 109.71155 * 77.06678 * 29 28 27 48 48 H 1.08999 * 109.75215 * 316.43687 * 29 28 27 49 49 H 1.08992 * 109.59087 * 293.81931 * 30 16 15 50 50 H 1.09003 * 109.70433 * 173.46171 * 30 16 15 51 51 H 1.08991 * 109.49823 * 301.34441 * 31 13 2 52 52 H 1.09001 * 109.49391 * 61.40522 * 31 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6122 -0.6617 -3.5091 8 7 2.7375 -0.0051 -4.6429 9 14 3.0577 -2.4738 -3.4249 10 1 4.4905 -2.6149 -3.0610 11 1 2.2181 -3.1428 -2.3988 12 1 2.8186 -3.1042 -4.7480 13 6 2.0400 -0.7213 1.2492 14 6 1.5303 -2.1644 1.2485 15 6 2.0714 -2.8934 2.4824 16 7 1.7086 -2.1261 3.6817 17 6 1.0559 -2.7158 4.7029 18 8 0.6918 -3.8684 4.6048 19 6 0.7787 -1.9429 5.9665 20 1 0.5315 -0.9118 5.7139 21 6 -0.3998 -2.5810 6.7052 22 6 -0.8772 -1.6464 7.8237 23 6 0.3230 -1.2402 8.6427 24 6 0.3482 -0.6952 9.8729 25 7 1.6436 -0.5031 10.2089 26 1 1.9665 -0.1244 11.0415 27 7 2.4387 -0.9476 9.1416 28 6 1.6498 -1.3871 8.2048 29 6 2.0242 -1.9643 6.8612 30 6 2.0712 -0.7037 3.7469 31 6 1.5304 0.0007 2.4987 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 2.2490 -1.6318 -1.1527 36 1 3.0615 -0.4622 -5.4348 37 1 3.1300 -0.7216 1.2488 38 1 0.4406 -2.1652 1.2740 39 1 1.8740 -2.6712 0.3469 40 1 3.1564 -2.9726 2.4137 41 1 1.6352 -3.8906 2.5408 42 1 -1.2162 -2.7543 6.0040 43 1 -0.0856 -3.5315 7.1365 44 1 -1.5954 -2.1673 8.4569 45 1 -1.3433 -0.7615 7.3902 46 1 -0.5109 -0.4553 10.4818 47 1 2.3700 -2.9905 6.9854 48 1 2.8125 -1.3628 6.4086 49 1 3.1561 -0.6044 3.7812 50 1 1.6346 -0.2536 4.6384 51 1 1.8741 1.0349 2.4868 52 1 0.4406 -0.0203 2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481342075.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:46 Heat of formation + Delta-G solvation = 17.282322 kcal Electronic energy + Delta-G solvation = -31153.702321 eV Core-core repulsion = 27153.323621 eV Total energy + Delta-G solvation = -4000.378700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.44919 -41.36858 -39.49331 -37.18419 -36.88658 -34.65436 -33.23041 -32.69224 -32.37355 -31.28741 -30.16785 -29.43752 -26.94518 -25.95593 -25.22343 -24.34661 -23.18300 -22.50734 -21.92486 -20.74430 -19.97462 -19.67644 -19.39738 -18.54518 -17.97788 -17.04074 -16.60356 -16.46213 -16.20184 -15.90940 -15.60676 -15.38574 -15.15754 -14.93375 -14.79495 -14.56558 -14.38985 -14.29435 -14.21208 -13.93190 -13.74866 -13.58244 -13.16289 -13.03056 -12.95295 -12.88468 -12.79638 -12.61536 -12.32087 -12.20638 -12.17549 -11.89977 -11.79697 -11.73221 -11.55923 -11.33541 -11.20807 -11.11776 -10.89555 -10.63385 -10.35313 -9.62179 -9.29936 -9.26363 -7.99945 -5.31199 1.01695 1.37143 1.39794 1.46873 1.56845 1.80120 1.95961 2.11959 2.49353 3.31601 3.35251 3.58998 3.61749 3.76116 3.84698 3.90816 3.94539 3.99665 4.12376 4.21510 4.29272 4.38569 4.41750 4.47310 4.49713 4.57598 4.63058 4.66059 4.70229 4.72303 4.80423 4.87227 4.90898 4.94658 5.01284 5.02748 5.06521 5.10044 5.15385 5.23628 5.24603 5.29272 5.34610 5.41340 5.45511 5.60723 5.71926 5.73062 5.81969 6.25308 6.45813 6.52970 6.75945 7.12211 7.18398 7.90875 8.08207 9.21934 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023701 B = 0.002200 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.101370 B =12722.590777 C =12987.690109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.175 3.825 3 H 0.045 0.955 4 N -0.752 5.752 5 C -0.220 4.220 6 H 0.057 0.943 7 C -0.068 4.068 8 N -0.986 5.986 9 Si 0.949 3.051 10 H -0.278 1.278 11 H -0.254 1.254 12 H -0.299 1.299 13 C -0.084 4.084 14 C -0.123 4.123 15 C 0.115 3.885 16 N -0.604 5.604 17 C 0.518 3.482 18 O -0.583 6.583 19 C -0.091 4.091 20 H 0.120 0.880 21 C -0.097 4.097 22 C -0.032 4.032 23 C -0.257 4.257 24 C 0.076 3.924 25 N -0.479 5.479 26 H 0.451 0.549 27 N -0.326 5.326 28 C 0.072 3.928 29 C -0.022 4.022 30 C 0.104 3.896 31 C -0.123 4.123 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.046 0.954 35 H 0.364 0.636 36 H 0.255 0.745 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.216 0.784 47 H 0.076 0.924 48 H 0.096 0.904 49 H 0.084 0.916 50 H 0.112 0.888 51 H 0.094 0.906 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.334 -0.621 35.489 36.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.068 3.932 3 H 0.064 0.936 4 N -0.396 5.396 5 C -0.351 4.351 6 H 0.075 0.925 7 C -0.259 4.259 8 N -0.637 5.637 9 Si 0.777 3.223 10 H -0.204 1.204 11 H -0.178 1.178 12 H -0.227 1.227 13 C -0.103 4.103 14 C -0.162 4.162 15 C -0.008 4.008 16 N -0.336 5.336 17 C 0.308 3.692 18 O -0.463 6.463 19 C -0.113 4.113 20 H 0.137 0.863 21 C -0.135 4.135 22 C -0.070 4.070 23 C -0.268 4.268 24 C -0.071 4.071 25 N -0.189 5.189 26 H 0.298 0.702 27 N -0.150 5.150 28 C -0.096 4.096 29 C -0.061 4.061 30 C -0.018 4.018 31 C -0.162 4.162 32 H 0.095 0.905 33 H 0.044 0.956 34 H 0.065 0.935 35 H 0.198 0.802 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.232 0.768 47 H 0.094 0.906 48 H 0.115 0.885 49 H 0.102 0.898 50 H 0.130 0.870 51 H 0.112 0.888 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.316 -0.843 35.662 36.066 hybrid contribution -0.118 -1.015 -0.918 1.374 sum -5.433 -1.858 34.744 35.215 Atomic orbital electron populations 1.22375 0.97961 1.00911 1.00545 1.20439 0.92622 0.95093 0.85089 0.93642 1.42920 1.79980 1.09581 1.07165 1.19051 1.34212 0.94353 0.87526 0.92514 1.25459 1.02917 1.02237 0.95331 1.69883 1.55148 1.37561 1.01141 0.85495 0.78654 0.81273 0.76876 1.20391 1.17846 1.22653 1.21318 1.00293 0.94353 0.94385 1.21896 1.01192 0.96116 0.96953 1.21526 1.00125 0.95487 0.83664 1.48233 1.56598 1.11824 1.16938 1.21011 0.76226 0.86821 0.85168 1.90672 1.53215 1.19814 1.82564 1.21316 0.97128 1.01647 0.91161 0.86253 1.21366 0.96187 0.98599 0.97374 1.19993 0.93404 0.99000 0.94596 1.20398 0.95317 1.13312 0.97801 1.22694 0.88970 0.98628 0.96776 1.46402 1.04278 1.51466 1.16762 0.70231 1.76954 1.19641 1.20843 0.97522 1.22267 0.92628 0.98739 0.95951 1.19874 0.96746 1.01176 0.88327 1.22065 1.01538 0.78608 0.99576 1.21980 1.01784 1.00022 0.92375 0.90510 0.95616 0.93531 0.80218 0.93574 0.91094 0.91631 0.92521 0.90591 0.90598 0.91363 0.92608 0.89424 0.89645 0.76751 0.90575 0.88534 0.89825 0.87003 0.88786 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 8.79 71.98 0.63 -4.52 16 2 C 0.17 6.11 2.72 44.99 0.12 6.24 16 3 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 4 N -0.75 -34.09 4.85 -322.94 -1.56 -35.66 16 5 C -0.22 -12.44 10.41 84.03 0.87 -11.56 16 6 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 7 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 8 N -0.99 -63.73 13.97 21.65 0.30 -63.43 16 9 Si 0.95 46.04 27.74 68.60 1.90 47.94 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 11 H -0.25 -11.16 6.52 99.48 0.65 -10.51 16 12 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 13 C -0.08 -2.19 2.14 -10.77 -0.02 -2.21 16 14 C -0.12 -3.30 4.81 30.67 0.15 -3.15 16 15 C 0.11 2.73 6.44 86.36 0.56 3.29 16 16 N -0.60 -12.18 2.97 -818.91 -2.43 -14.62 16 17 C 0.52 11.47 6.78 87.65 0.59 12.07 16 18 O -0.58 -17.77 15.62 -3.02 -0.05 -17.81 16 19 C -0.09 -1.40 1.64 -11.41 -0.02 -1.42 16 20 H 0.12 1.35 6.17 -2.39 -0.01 1.34 16 21 C -0.10 -1.49 4.56 30.73 0.14 -1.35 16 22 C -0.03 -0.32 6.28 30.03 0.19 -0.13 16 23 C -0.26 -3.30 5.89 -20.10 -0.12 -3.41 16 24 C 0.08 0.63 11.95 83.34 1.00 1.63 16 25 N -0.48 -5.27 7.37 -57.89 -0.43 -5.69 16 26 H 0.45 2.08 8.96 -213.18 -1.91 0.17 16 27 N -0.33 -6.09 12.68 -47.14 -0.60 -6.68 16 28 C 0.07 1.23 7.10 43.44 0.31 1.53 16 29 C -0.02 -0.34 5.54 30.05 0.17 -0.18 16 30 C 0.10 1.51 6.02 86.36 0.52 2.03 16 31 C -0.12 -2.20 4.97 30.67 0.15 -2.05 16 32 H 0.08 1.93 6.46 -2.39 -0.02 1.91 16 33 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 1.51 6.46 -2.38 -0.02 1.50 16 35 H 0.36 15.98 3.90 -92.71 -0.36 15.62 16 36 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 1.82 6.51 -2.39 -0.02 1.81 16 39 H 0.06 1.74 6.46 -2.39 -0.02 1.72 16 40 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.08 2.05 7.00 -2.39 -0.02 2.04 16 42 H 0.07 1.13 8.05 -2.39 -0.02 1.11 16 43 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 44 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.22 -0.09 8.06 -2.91 -0.02 -0.11 16 47 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 48 H 0.10 1.33 7.87 -2.39 -0.02 1.31 16 49 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.11 1.08 5.42 -2.39 -0.01 1.07 16 51 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.07 1.34 6.51 -2.39 -0.02 1.32 16 Total: -1.00 -79.60 392.97 1.46 -78.14 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -1.38 Total: 24.61 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 5.71 Total: -6.80 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -4.72 Total: -126.08 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.05 Total: -17.81 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Total: -79.60 1.46 -78.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481342075.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.424 kcal (2) G-P(sol) polarization free energy of solvation -79.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds