Wall clock time and date at job start Wed Apr 1 2020 04:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46697 * 2 1 4 4 N 1.46501 * 109.46940 * 119.99887 * 2 1 3 5 5 C 1.36937 * 120.00128 * 275.00400 * 4 2 1 6 6 H 1.07997 * 120.00007 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99862 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00026 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99848 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46926 * 60.00158 * 9 7 5 11 11 H 1.48500 * 109.46941 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47091 * 300.00061 * 9 7 5 13 13 C 1.52996 * 109.47044 * 240.00155 * 2 1 3 14 14 C 1.53039 * 109.46448 * 60.00105 * 13 2 1 15 15 C 1.53188 * 109.33934 * 181.36640 * 14 13 2 16 16 N 1.46928 * 108.77463 * 305.41385 * 15 14 13 17 17 C 1.34777 * 120.60685 * 233.57870 * 16 15 14 18 18 O 1.21286 * 119.99845 * 354.76997 * 17 16 15 19 19 C 1.50700 * 120.00212 * 174.76636 * 17 16 15 20 20 H 1.08996 * 109.42494 * 324.56160 * 19 17 16 21 21 C 1.53030 * 109.42570 * 204.67340 * 19 17 16 22 22 C 1.53380 * 109.72068 * 168.18888 * 21 19 17 23 23 C 1.50884 * 108.19276 * 50.53499 * 22 21 19 24 24 C 1.34578 * 128.32624 * 163.42877 * 23 22 21 25 25 N 1.35194 * 107.61673 * 180.14031 * 24 23 22 26 26 H 0.97005 * 125.99822 * 180.02562 * 25 24 23 27 27 N 1.40308 * 107.99577 * 359.96741 * 25 24 23 28 28 C 1.30128 * 108.12485 * 359.95472 * 27 25 24 29 29 C 1.50922 * 128.30663 * 180.23258 * 28 27 25 30 30 C 1.46920 * 118.76556 * 53.55465 * 16 15 14 31 31 C 1.53049 * 109.45794 * 180.02562 * 13 2 1 32 32 H 1.09004 * 109.46666 * 60.00450 * 1 2 3 33 33 H 1.08997 * 109.46752 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47515 * 299.99987 * 1 2 3 35 35 H 0.96999 * 119.99552 * 94.99855 * 4 2 1 36 36 H 0.97001 * 119.99963 * 180.02562 * 8 7 5 37 37 H 1.09007 * 109.45087 * 300.02833 * 13 2 1 38 38 H 1.09000 * 109.49629 * 301.33767 * 14 13 2 39 39 H 1.08997 * 109.49560 * 61.39843 * 14 13 2 40 40 H 1.09002 * 109.58752 * 65.17385 * 15 14 13 41 41 H 1.09004 * 109.58169 * 185.59239 * 15 14 13 42 42 H 1.08998 * 109.42890 * 288.26733 * 21 19 17 43 43 H 1.09001 * 109.42965 * 48.16168 * 21 19 17 44 44 H 1.09001 * 109.72366 * 170.21143 * 22 21 19 45 45 H 1.09005 * 109.72189 * 290.81967 * 22 21 19 46 46 H 1.07999 * 126.18881 * 0.11529 * 24 23 22 47 47 H 1.08999 * 109.66902 * 43.48552 * 29 28 27 48 48 H 1.09004 * 109.75274 * 282.85045 * 29 28 27 49 49 H 1.09001 * 109.59161 * 186.62713 * 30 16 15 50 50 H 1.09007 * 109.70377 * 66.26957 * 30 16 15 51 51 H 1.08996 * 109.49608 * 298.56451 * 31 13 2 52 52 H 1.09005 * 109.49238 * 58.63225 * 31 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6122 -0.6618 3.5091 8 7 2.9253 -1.9389 3.4499 9 14 2.7912 0.2702 5.1180 10 1 1.4689 0.8069 5.5288 11 1 3.3000 -0.6483 6.1681 12 1 3.7463 1.3927 4.9363 13 6 2.0400 -0.7212 -1.2492 14 6 1.5298 0.0004 -2.4987 15 6 2.0137 -0.7435 -3.7473 16 7 3.4754 -0.8771 -3.6815 17 6 4.2494 -0.4581 -4.7021 18 8 3.7378 -0.0533 -5.7247 19 6 5.7505 -0.4923 -4.5729 20 1 6.0313 -0.2591 -3.5459 21 6 6.3663 0.5432 -5.5165 22 6 7.8529 0.7254 -5.1858 23 6 8.4942 -0.6393 -5.1317 24 6 9.8031 -0.9488 -5.1779 25 7 9.9083 -2.2945 -5.1013 26 1 10.7341 -2.8033 -5.1110 27 7 8.6133 -2.8257 -5.0039 28 6 7.7677 -1.8367 -5.0207 29 6 6.2619 -1.8918 -4.9364 30 6 4.0774 -1.4754 -2.4822 31 6 3.5705 -0.7216 -1.2486 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 2.2490 -1.6318 1.1526 36 1 3.2486 -2.3961 4.2420 37 1 1.6761 -1.7487 -1.2492 38 1 0.4401 0.0215 -2.4871 39 1 1.9133 1.0206 -2.5116 40 1 1.5580 -1.7331 -3.7826 41 1 1.7374 -0.1798 -4.6384 42 1 6.2632 0.2018 -6.5465 43 1 5.8496 1.4954 -5.3968 44 1 8.3310 1.3260 -5.9596 45 1 7.9569 1.2198 -4.2199 46 1 10.6212 -0.2488 -5.2615 47 1 5.9633 -2.6038 -4.1670 48 1 5.8500 -2.1954 -5.8989 49 1 5.1629 -1.3946 -2.5391 50 1 3.7922 -2.5252 -2.4125 51 1 3.9346 0.3055 -1.2740 52 1 3.9338 -1.2142 -0.3466 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481342079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:58 Heat of formation + Delta-G solvation = 33.102097 kcal Electronic energy + Delta-G solvation = -31163.245243 eV Core-core repulsion = 27163.552539 eV Total energy + Delta-G solvation = -3999.692703 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.76350 -40.33013 -38.10813 -36.29511 -35.38699 -32.98237 -32.44307 -31.44718 -30.74010 -30.42355 -28.78410 -28.22577 -25.78892 -24.88223 -23.76852 -22.95611 -22.24167 -21.29173 -20.88095 -19.69734 -19.18060 -18.70903 -17.91539 -17.36169 -16.86435 -15.94056 -15.60658 -15.18615 -14.92566 -14.59407 -14.29709 -14.15424 -13.93446 -13.79511 -13.77319 -13.53775 -13.46338 -13.06978 -12.87524 -12.59315 -12.53383 -12.25495 -12.15779 -12.00751 -11.66351 -11.53195 -11.45722 -11.17882 -11.07493 -10.91475 -10.83552 -10.69703 -10.49925 -10.27150 -10.21379 -10.15836 -9.81524 -9.65266 -9.58472 -9.55142 -8.89139 -8.67699 -8.53360 -6.93625 -5.75842 -3.03529 1.64600 2.44564 2.51854 2.68677 3.02205 3.43689 3.48725 3.49113 4.13057 4.39280 4.51256 4.59041 4.61029 4.81393 4.88318 4.98651 5.08069 5.12646 5.15075 5.20097 5.26904 5.32480 5.36223 5.42281 5.52663 5.55331 5.58143 5.67427 5.70599 5.76065 5.82095 5.91913 5.93229 5.95947 5.98578 6.05478 6.13153 6.14632 6.24782 6.34292 6.39683 6.46384 6.51094 6.59161 6.68594 6.81952 6.96656 7.02292 7.15001 7.41771 7.44750 7.70948 8.18070 8.43279 9.54386 10.12910 10.47735 11.46779 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011187 B = 0.002666 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.403483 B =10498.434479 C =12149.776406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.234 4.234 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.934 5.934 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.089 4.089 14 C -0.128 4.128 15 C 0.112 3.888 16 N -0.605 5.605 17 C 0.522 3.478 18 O -0.546 6.546 19 C -0.104 4.104 20 H 0.100 0.900 21 C -0.097 4.097 22 C -0.041 4.041 23 C -0.235 4.235 24 C 0.060 3.940 25 N -0.485 5.485 26 H 0.439 0.561 27 N -0.286 5.286 28 C 0.087 3.913 29 C -0.027 4.027 30 C 0.101 3.899 31 C -0.123 4.123 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.176 0.824 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.071 0.929 51 H 0.062 0.938 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.757 2.130 -20.164 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.366 4.366 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.166 4.166 15 C -0.010 4.010 16 N -0.338 5.338 17 C 0.310 3.690 18 O -0.424 6.424 19 C -0.125 4.125 20 H 0.119 0.881 21 C -0.135 4.135 22 C -0.080 4.080 23 C -0.246 4.246 24 C -0.086 4.086 25 N -0.194 5.194 26 H 0.283 0.717 27 N -0.108 5.108 28 C -0.082 4.082 29 C -0.067 4.067 30 C -0.021 4.021 31 C -0.161 4.161 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.193 0.807 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.102 0.898 50 H 0.089 0.911 51 H 0.081 0.919 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.642 1.206 -20.480 23.111 hybrid contribution 0.639 0.674 1.169 1.493 sum 11.281 1.880 -19.311 22.443 Atomic orbital electron populations 1.22496 0.99577 1.00736 0.99827 1.20215 0.91563 0.95308 0.86106 0.93767 1.42406 1.78096 1.10611 1.05277 1.19175 1.36211 0.93756 0.87432 0.91430 1.24698 1.02395 0.95945 0.97915 1.69641 1.51123 1.08602 1.28902 0.86317 0.77737 0.78620 0.83816 1.21407 1.21779 1.21356 1.21373 0.94969 0.99911 0.94617 1.22015 1.01130 0.99608 0.93877 1.21631 0.79189 1.00766 0.99412 1.48199 1.07185 1.60598 1.17816 1.20467 0.88923 0.76824 0.82818 1.90668 1.75386 1.47601 1.28772 1.21360 0.91717 0.96705 1.02760 0.88149 1.21378 0.94272 0.98403 0.99399 1.20033 0.94282 0.91793 1.01854 1.20153 0.92130 0.96669 1.15654 1.22072 0.98499 0.86062 1.01919 1.46328 1.07576 1.05118 1.60330 0.71729 1.77033 0.87645 1.21798 1.24317 1.22153 0.96116 0.90792 0.99117 1.19987 0.86941 0.96043 1.03717 1.21986 0.98245 0.97455 0.84458 1.21899 0.96064 1.00955 0.97213 0.94300 0.93616 0.93070 0.78345 0.93557 0.91405 0.90445 0.91720 0.91678 0.89404 0.90805 0.90809 0.90804 0.90919 0.80686 0.89231 0.89148 0.89823 0.91071 0.91918 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.14 37.16 0.34 -2.56 16 2 C 0.18 3.32 2.47 -67.93 -0.17 3.15 16 3 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 4 N -0.72 -17.08 4.41 -53.42 -0.24 -17.31 16 5 C -0.23 -6.29 9.93 -15.06 -0.15 -6.44 16 6 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 9 Si 0.90 22.08 29.55 -169.99 -5.02 17.05 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 C -0.09 -1.34 1.79 -90.58 -0.16 -1.50 16 14 C -0.13 -1.62 5.04 -26.61 -0.13 -1.76 16 15 C 0.11 1.37 6.42 -3.71 -0.02 1.34 16 16 N -0.61 -7.42 2.97 -172.77 -0.51 -7.94 16 17 C 0.52 6.67 6.76 -10.98 -0.07 6.59 16 18 O -0.55 -8.58 15.69 5.55 0.09 -8.50 16 19 C -0.10 -1.07 1.61 -91.56 -0.15 -1.22 16 20 H 0.10 1.00 6.48 -51.93 -0.34 0.66 16 21 C -0.10 -0.93 4.57 -26.52 -0.12 -1.05 16 22 C -0.04 -0.33 6.28 -27.60 -0.17 -0.50 16 23 C -0.23 -2.20 5.89 -104.98 -0.62 -2.82 16 24 C 0.06 0.45 11.95 -17.37 -0.21 0.24 16 25 N -0.49 -4.02 7.37 30.35 0.22 -3.80 16 26 H 0.44 2.19 8.96 -182.43 -1.64 0.55 16 27 N -0.29 -3.35 12.68 33.74 0.43 -2.92 16 28 C 0.09 0.96 7.10 -82.36 -0.58 0.38 16 29 C -0.03 -0.28 5.41 -27.58 -0.15 -0.43 16 30 C 0.10 1.19 5.92 -3.71 -0.02 1.17 16 31 C -0.12 -1.79 5.22 -26.61 -0.14 -1.93 16 32 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.38 9.62 7.58 -40.82 -0.31 9.31 16 36 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 0.92 6.36 -51.93 -0.33 0.59 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.12 7.04 -51.93 -0.37 0.76 16 42 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 43 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.18 0.65 8.06 -52.49 -0.42 0.22 16 47 H 0.09 0.88 7.27 -51.93 -0.38 0.50 16 48 H 0.09 0.95 8.12 -51.93 -0.42 0.52 16 49 H 0.08 0.87 4.96 -51.93 -0.26 0.62 16 50 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 51 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.09 1.59 7.40 -51.93 -0.38 1.21 16 LS Contribution 400.36 15.07 6.03 6.03 Total: -1.00 -33.06 400.36 -10.69 -43.75 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -9.78 Total: 8.17 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.63 Total: -7.81 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.63 Total: -58.69 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.06 -10.69 -43.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481342079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.857 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds