Wall clock time and date at job start Wed Apr 1 2020 04:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46697 * 2 1 4 4 N 1.46501 * 109.46940 * 119.99887 * 2 1 3 5 5 C 1.36937 * 120.00128 * 275.00400 * 4 2 1 6 6 H 1.07997 * 120.00007 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99862 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00026 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99848 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46926 * 60.00158 * 9 7 5 11 11 H 1.48500 * 109.46941 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47091 * 300.00061 * 9 7 5 13 13 C 1.52996 * 109.47044 * 240.00155 * 2 1 3 14 14 C 1.53039 * 109.46448 * 60.00105 * 13 2 1 15 15 C 1.53188 * 109.33934 * 181.36640 * 14 13 2 16 16 N 1.46928 * 108.77463 * 305.41385 * 15 14 13 17 17 C 1.34777 * 120.60685 * 233.57870 * 16 15 14 18 18 O 1.21286 * 119.99845 * 354.76997 * 17 16 15 19 19 C 1.50700 * 120.00212 * 174.76636 * 17 16 15 20 20 H 1.08996 * 109.42494 * 324.56160 * 19 17 16 21 21 C 1.53030 * 109.42570 * 204.67340 * 19 17 16 22 22 C 1.53380 * 109.72068 * 168.18888 * 21 19 17 23 23 C 1.50884 * 108.19276 * 50.53499 * 22 21 19 24 24 C 1.34578 * 128.32624 * 163.42877 * 23 22 21 25 25 N 1.35194 * 107.61673 * 180.14031 * 24 23 22 26 26 H 0.97005 * 125.99822 * 180.02562 * 25 24 23 27 27 N 1.40308 * 107.99577 * 359.96741 * 25 24 23 28 28 C 1.30128 * 108.12485 * 359.95472 * 27 25 24 29 29 C 1.50922 * 128.30663 * 180.23258 * 28 27 25 30 30 C 1.46920 * 118.76556 * 53.55465 * 16 15 14 31 31 C 1.53049 * 109.45794 * 180.02562 * 13 2 1 32 32 H 1.09004 * 109.46666 * 60.00450 * 1 2 3 33 33 H 1.08997 * 109.46752 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47515 * 299.99987 * 1 2 3 35 35 H 0.96999 * 119.99552 * 94.99855 * 4 2 1 36 36 H 0.97001 * 119.99963 * 180.02562 * 8 7 5 37 37 H 1.09007 * 109.45087 * 300.02833 * 13 2 1 38 38 H 1.09000 * 109.49629 * 301.33767 * 14 13 2 39 39 H 1.08997 * 109.49560 * 61.39843 * 14 13 2 40 40 H 1.09002 * 109.58752 * 65.17385 * 15 14 13 41 41 H 1.09004 * 109.58169 * 185.59239 * 15 14 13 42 42 H 1.08998 * 109.42890 * 288.26733 * 21 19 17 43 43 H 1.09001 * 109.42965 * 48.16168 * 21 19 17 44 44 H 1.09001 * 109.72366 * 170.21143 * 22 21 19 45 45 H 1.09005 * 109.72189 * 290.81967 * 22 21 19 46 46 H 1.07999 * 126.18881 * 0.11529 * 24 23 22 47 47 H 1.08999 * 109.66902 * 43.48552 * 29 28 27 48 48 H 1.09004 * 109.75274 * 282.85045 * 29 28 27 49 49 H 1.09001 * 109.59161 * 186.62713 * 30 16 15 50 50 H 1.09007 * 109.70377 * 66.26957 * 30 16 15 51 51 H 1.08996 * 109.49608 * 298.56451 * 31 13 2 52 52 H 1.09005 * 109.49238 * 58.63225 * 31 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6122 -0.6618 3.5091 8 7 2.9253 -1.9389 3.4499 9 14 2.7912 0.2702 5.1180 10 1 1.4689 0.8069 5.5288 11 1 3.3000 -0.6483 6.1681 12 1 3.7463 1.3927 4.9363 13 6 2.0400 -0.7212 -1.2492 14 6 1.5298 0.0004 -2.4987 15 6 2.0137 -0.7435 -3.7473 16 7 3.4754 -0.8771 -3.6815 17 6 4.2494 -0.4581 -4.7021 18 8 3.7378 -0.0533 -5.7247 19 6 5.7505 -0.4923 -4.5729 20 1 6.0313 -0.2591 -3.5459 21 6 6.3663 0.5432 -5.5165 22 6 7.8529 0.7254 -5.1858 23 6 8.4942 -0.6393 -5.1317 24 6 9.8031 -0.9488 -5.1779 25 7 9.9083 -2.2945 -5.1013 26 1 10.7341 -2.8033 -5.1110 27 7 8.6133 -2.8257 -5.0039 28 6 7.7677 -1.8367 -5.0207 29 6 6.2619 -1.8918 -4.9364 30 6 4.0774 -1.4754 -2.4822 31 6 3.5705 -0.7216 -1.2486 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 2.2490 -1.6318 1.1526 36 1 3.2486 -2.3961 4.2420 37 1 1.6761 -1.7487 -1.2492 38 1 0.4401 0.0215 -2.4871 39 1 1.9133 1.0206 -2.5116 40 1 1.5580 -1.7331 -3.7826 41 1 1.7374 -0.1798 -4.6384 42 1 6.2632 0.2018 -6.5465 43 1 5.8496 1.4954 -5.3968 44 1 8.3310 1.3260 -5.9596 45 1 7.9569 1.2198 -4.2199 46 1 10.6212 -0.2488 -5.2615 47 1 5.9633 -2.6038 -4.1670 48 1 5.8500 -2.1954 -5.8989 49 1 5.1629 -1.3946 -2.5391 50 1 3.7922 -2.5252 -2.4125 51 1 3.9346 0.3055 -1.2740 52 1 3.9338 -1.2142 -0.3466 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481342079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:56 Heat of formation + Delta-G solvation = 12.958942 kcal Electronic energy + Delta-G solvation = -31164.118715 eV Core-core repulsion = 27163.552539 eV Total energy + Delta-G solvation = -4000.566176 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.46716 -41.33854 -39.31562 -37.17370 -36.80881 -34.61457 -33.23923 -32.58979 -32.06277 -31.40969 -29.92382 -29.43266 -26.86849 -26.14232 -25.20851 -24.10037 -23.20290 -22.08202 -21.94643 -21.05813 -20.11258 -19.63206 -19.10140 -18.57030 -18.03138 -16.93553 -16.76726 -16.44866 -15.98679 -15.65901 -15.50929 -15.42863 -15.10472 -14.93102 -14.90718 -14.57178 -14.35010 -14.18834 -13.91181 -13.81301 -13.70016 -13.43899 -13.33366 -12.95815 -12.91719 -12.83346 -12.71253 -12.35505 -12.26897 -12.22327 -12.19499 -12.10780 -11.85481 -11.72376 -11.45245 -11.29643 -11.22702 -11.15731 -10.87011 -10.62392 -10.36955 -9.60654 -9.31891 -8.91992 -7.88524 -5.14448 0.99762 1.49079 1.50565 1.55321 1.56513 1.78231 1.95605 2.11272 2.59936 3.33211 3.45071 3.60826 3.74006 3.81048 3.83277 3.90960 3.93744 4.11383 4.20238 4.27438 4.29810 4.40414 4.43430 4.47163 4.51315 4.58977 4.61656 4.64588 4.68583 4.78557 4.84067 4.87478 4.92771 4.96972 4.99193 5.03673 5.09491 5.13890 5.17591 5.21948 5.27211 5.29867 5.37869 5.42066 5.52196 5.56101 5.66213 5.70839 5.72521 6.34305 6.42650 6.51420 6.73968 7.16316 7.40887 8.19445 8.42465 9.34506 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011187 B = 0.002666 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.403483 B =10498.434479 C =12149.776406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 H 0.035 0.965 4 N -0.731 5.731 5 C -0.231 4.231 6 H 0.069 0.931 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.963 3.037 10 H -0.283 1.283 11 H -0.298 1.298 12 H -0.280 1.280 13 C -0.080 4.080 14 C -0.116 4.116 15 C 0.113 3.887 16 N -0.605 5.605 17 C 0.522 3.478 18 O -0.577 6.577 19 C -0.095 4.095 20 H 0.106 0.894 21 C -0.094 4.094 22 C -0.033 4.033 23 C -0.258 4.258 24 C 0.076 3.924 25 N -0.479 5.479 26 H 0.452 0.548 27 N -0.327 5.327 28 C 0.071 3.929 29 C -0.023 4.023 30 C 0.110 3.890 31 C -0.117 4.117 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.029 0.971 35 H 0.373 0.627 36 H 0.249 0.751 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.217 0.783 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.099 0.901 50 H 0.080 0.920 51 H 0.056 0.944 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.673 3.266 -21.161 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.065 3.935 3 H 0.053 0.947 4 N -0.371 5.371 5 C -0.363 4.363 6 H 0.087 0.913 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.793 3.207 10 H -0.209 1.209 11 H -0.224 1.224 12 H -0.206 1.206 13 C -0.099 4.099 14 C -0.155 4.155 15 C -0.009 4.009 16 N -0.336 5.336 17 C 0.311 3.689 18 O -0.457 6.457 19 C -0.117 4.117 20 H 0.124 0.876 21 C -0.132 4.132 22 C -0.071 4.071 23 C -0.270 4.270 24 C -0.070 4.070 25 N -0.189 5.189 26 H 0.298 0.702 27 N -0.150 5.150 28 C -0.097 4.097 29 C -0.062 4.062 30 C -0.012 4.012 31 C -0.155 4.155 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.205 0.795 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.097 0.903 46 H 0.234 0.766 47 H 0.109 0.891 48 H 0.101 0.899 49 H 0.117 0.883 50 H 0.098 0.902 51 H 0.075 0.925 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.543 2.362 -21.499 24.516 hybrid contribution 0.361 0.351 1.406 1.493 sum 11.904 2.713 -20.093 23.512 Atomic orbital electron populations 1.22366 0.98151 1.00762 1.00490 1.20437 0.92425 0.94753 0.85907 0.94691 1.42561 1.78291 1.10238 1.06023 1.19503 1.34359 0.93900 0.88537 0.91294 1.25399 1.03430 0.96801 1.00949 1.69787 1.52902 1.09962 1.29201 0.85361 0.77745 0.77431 0.80148 1.20927 1.22416 1.20582 1.21250 0.95158 0.99613 0.93893 1.21916 1.01899 0.98995 0.92669 1.21645 0.79181 1.01321 0.98779 1.48248 1.07384 1.60284 1.17723 1.20852 0.89846 0.75937 0.82270 1.90653 1.76104 1.48994 1.29924 1.21320 0.89927 0.97159 1.03301 0.87555 1.21353 0.95629 0.97732 0.98511 1.20004 0.92798 0.91500 1.02811 1.20421 0.92940 0.96655 1.16958 1.22703 0.99011 0.86014 0.99296 1.46393 1.07191 1.05793 1.59507 0.70204 1.76946 0.89121 1.22979 1.25977 1.22282 0.96239 0.91622 0.99574 1.19906 0.87164 0.95833 1.03341 1.21913 0.99059 0.97296 0.82938 1.21764 0.95839 1.00587 0.97306 0.90818 0.93876 0.95198 0.79470 0.94261 0.91483 0.89007 0.92103 0.90455 0.89680 0.91962 0.91208 0.88979 0.90254 0.76614 0.89139 0.89887 0.88332 0.90201 0.92539 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.31 9.14 71.98 0.66 -4.65 16 2 C 0.17 6.37 2.47 44.99 0.11 6.48 16 3 H 0.04 1.36 8.08 -2.39 -0.02 1.34 16 4 N -0.73 -34.90 4.41 -322.93 -1.42 -36.32 16 5 C -0.23 -12.45 9.93 84.03 0.83 -11.62 16 6 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 7 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 8 N -0.97 -57.86 13.06 21.65 0.28 -57.58 16 9 Si 0.96 45.68 29.55 68.60 2.03 47.71 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C -0.08 -2.32 1.79 -10.77 -0.02 -2.34 16 14 C -0.12 -2.73 5.04 30.67 0.15 -2.58 16 15 C 0.11 2.56 6.42 86.36 0.55 3.11 16 16 N -0.60 -14.12 2.97 -818.90 -2.43 -16.55 16 17 C 0.52 12.94 6.76 87.66 0.59 13.53 16 18 O -0.58 -17.86 15.69 -3.05 -0.05 -17.91 16 19 C -0.10 -1.90 1.61 -11.40 -0.02 -1.92 16 20 H 0.11 1.99 6.48 -2.39 -0.02 1.97 16 21 C -0.09 -1.72 4.57 30.73 0.14 -1.58 16 22 C -0.03 -0.46 6.28 30.03 0.19 -0.27 16 23 C -0.26 -4.37 5.89 -20.10 -0.12 -4.48 16 24 C 0.08 0.92 11.95 83.34 1.00 1.92 16 25 N -0.48 -7.09 7.37 -57.88 -0.43 -7.52 16 26 H 0.45 3.69 8.96 -213.18 -1.91 1.77 16 27 N -0.33 -7.45 12.68 -47.16 -0.60 -8.05 16 28 C 0.07 1.51 7.10 43.43 0.31 1.82 16 29 C -0.02 -0.46 5.41 30.04 0.16 -0.30 16 30 C 0.11 2.49 5.92 86.36 0.51 3.00 16 31 C -0.12 -3.36 5.22 30.68 0.16 -3.20 16 32 H 0.07 1.95 6.40 -2.39 -0.02 1.93 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.37 19.13 7.58 -92.71 -0.70 18.43 16 36 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 37 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.09 1.92 6.36 -2.39 -0.02 1.90 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 2.04 7.04 -2.38 -0.02 2.02 16 42 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 43 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 44 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.22 0.65 8.06 -2.91 -0.02 0.63 16 47 H 0.09 1.75 7.27 -2.39 -0.02 1.73 16 48 H 0.08 1.76 8.12 -2.38 -0.02 1.74 16 49 H 0.10 1.95 4.96 -2.39 -0.01 1.94 16 50 H 0.08 1.71 8.14 -2.38 -0.02 1.70 16 51 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.06 2.22 7.40 -2.38 -0.02 2.20 16 Total: -1.00 -72.00 400.36 1.39 -70.61 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -1.67 Total: 32.37 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 5.68 Total: -6.76 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -4.60 Total: -126.02 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.05 Total: -17.91 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -72.00 1.39 -70.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481342079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.570 kcal (2) G-P(sol) polarization free energy of solvation -72.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds