Wall clock time and date at job start Wed Apr 1 2020 03:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47574 * 2 1 4 4 N 1.46503 * 109.47079 * 120.00720 * 2 1 3 5 5 C 1.36941 * 119.99703 * 274.99616 * 4 2 1 6 6 H 1.08007 * 119.99838 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00165 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00069 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00091 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47478 * 60.00055 * 9 7 5 11 11 H 1.48500 * 109.47272 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47228 * 299.99573 * 9 7 5 13 13 C 1.53002 * 109.46955 * 240.00122 * 2 1 3 14 14 C 1.53041 * 109.45983 * 180.02562 * 13 2 1 15 15 C 1.53196 * 109.31329 * 178.61861 * 14 13 2 16 16 N 1.46924 * 108.77573 * 54.63250 * 15 14 13 17 17 C 1.34781 * 120.62892 * 126.37532 * 16 15 14 18 18 O 1.21604 * 119.99664 * 174.94294 * 17 16 15 19 19 C 1.47429 * 119.99964 * 354.93556 * 17 16 15 20 20 C 1.41295 * 126.41544 * 65.53113 * 19 17 16 21 21 N 1.30444 * 108.02097 * 179.97438 * 20 19 17 22 22 N 1.39938 * 108.89871 * 0.02562 * 21 20 19 23 23 C 1.46496 * 125.75136 * 179.97438 * 22 21 20 24 24 C 1.34260 * 108.49025 * 359.74151 * 22 21 20 25 25 C 1.50699 * 126.28720 * 180.24703 * 24 22 21 26 26 C 1.53000 * 117.49791 * 196.71604 * 25 24 22 27 27 C 1.52995 * 60.00129 * 252.51057 * 26 25 24 28 28 C 1.46924 * 118.73940 * 306.39414 * 16 15 14 29 29 C 1.53043 * 109.46055 * 60.00121 * 13 2 1 30 30 H 1.08998 * 109.46685 * 299.99685 * 1 2 3 31 31 H 1.08994 * 109.46858 * 59.99507 * 1 2 3 32 32 H 1.09001 * 109.46753 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00160 * 95.00185 * 4 2 1 34 34 H 0.96995 * 119.99954 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.45173 * 300.03428 * 13 2 1 36 36 H 1.09001 * 109.49702 * 298.56657 * 14 13 2 37 37 H 1.08996 * 109.50030 * 58.66684 * 14 13 2 38 38 H 1.09002 * 109.58424 * 294.84435 * 15 14 13 39 39 H 1.08994 * 109.70178 * 174.49202 * 15 14 13 40 40 H 1.07991 * 125.98490 * 359.97438 * 20 19 17 41 41 H 1.09002 * 109.47527 * 95.14850 * 23 22 21 42 42 H 1.09000 * 109.47179 * 215.14483 * 23 22 21 43 43 H 1.08995 * 109.47590 * 335.14547 * 23 22 21 44 44 H 1.08999 * 115.55779 * 342.42190 * 25 24 22 45 45 H 1.08997 * 117.50054 * 359.97438 * 26 25 24 46 46 H 1.08998 * 117.50001 * 145.02329 * 26 25 24 47 47 H 1.09003 * 117.50284 * 252.50848 * 27 26 25 48 48 H 1.09009 * 117.49964 * 107.48510 * 27 26 25 49 49 H 1.09002 * 109.58446 * 293.81884 * 28 16 15 50 50 H 1.08998 * 109.70281 * 173.46938 * 28 16 15 51 51 H 1.09000 * 109.49301 * 301.34096 * 29 13 2 52 52 H 1.08999 * 109.49742 * 61.39680 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 2.1492 -0.0077 2.3758 6 1 1.8920 1.0402 2.4244 7 6 2.6124 -0.6620 3.5089 8 7 2.9253 -1.9391 3.4498 9 14 2.7901 0.2697 5.1182 10 1 1.4675 0.8054 5.5289 11 1 3.3004 -0.6485 6.1680 12 1 3.7447 1.3928 4.9372 13 6 2.0400 -0.7212 -1.2493 14 6 3.5704 -0.7217 -1.2487 15 6 4.0773 -1.4744 -2.4829 16 7 3.4744 -0.8767 -3.6821 17 6 4.2478 -0.4571 -4.7031 18 8 3.7342 -0.0493 -5.7271 19 6 5.7164 -0.4924 -4.5783 20 6 6.5205 -1.6481 -4.4593 21 7 7.7649 -1.2666 -4.3724 22 7 7.8158 0.1306 -4.4302 23 6 9.0308 0.9464 -4.3645 24 6 6.5637 0.5972 -4.5611 25 6 6.1577 2.0447 -4.6665 26 6 4.6871 2.3858 -4.4179 27 6 5.2562 2.4421 -5.8370 28 6 2.0126 -0.7448 -3.7469 29 6 1.5297 0.0005 -2.4987 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6319 1.1524 34 1 3.2486 -2.3963 4.2418 35 1 1.6760 -1.7486 -1.2493 36 1 3.9345 0.3054 -1.2741 37 1 3.9338 -1.2148 -0.3472 38 1 3.7906 -2.5238 -2.4141 39 1 5.1628 -1.3953 -2.5415 40 1 6.1669 -2.6683 -4.4432 41 1 9.3668 1.1800 -5.3748 42 1 8.8187 1.8718 -3.8291 43 1 9.8112 0.3944 -3.8407 44 1 6.9047 2.7676 -4.3386 45 1 4.0132 1.5633 -4.1786 46 1 4.4664 3.3333 -3.9263 47 1 5.4098 3.4266 -6.2791 48 1 4.9567 1.6565 -6.5309 49 1 1.5575 -1.7346 -3.7813 50 1 1.7335 -0.1832 -4.6385 51 1 0.4400 0.0216 -2.4870 52 1 1.9131 1.0207 -2.5116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481345942.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:34 Heat of formation + Delta-G solvation = 80.835775 kcal Electronic energy + Delta-G solvation = -31954.625453 eV Core-core repulsion = 27957.002637 eV Total energy + Delta-G solvation = -3997.622816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.79832 -39.79104 -37.92342 -37.02315 -35.29868 -33.69426 -32.81716 -31.19962 -30.69850 -30.04951 -28.31991 -27.29270 -25.38147 -24.27454 -23.53053 -22.72809 -22.59744 -21.91887 -20.98046 -20.15380 -19.57365 -18.64743 -17.72368 -17.11289 -16.56384 -16.07677 -15.65192 -15.07767 -14.88256 -14.76354 -14.65270 -14.11481 -13.92349 -13.85399 -13.83660 -13.48691 -13.35156 -13.07093 -12.93146 -12.61247 -12.52602 -12.25129 -12.00623 -11.80757 -11.56621 -11.52951 -11.29491 -11.12747 -11.11311 -10.94996 -10.84445 -10.69901 -10.59069 -10.26543 -10.19634 -10.14065 -9.82989 -9.71662 -9.55654 -9.40952 -8.88590 -8.63650 -8.44843 -6.92891 -5.75344 -3.02985 1.44206 2.13579 2.23900 2.75038 3.21478 3.43556 3.48544 3.49034 3.71613 4.10848 4.25385 4.57495 4.59387 4.64509 4.75173 4.78216 4.85910 4.93417 5.02738 5.09496 5.10660 5.20780 5.30552 5.36444 5.46128 5.47474 5.54488 5.56481 5.65008 5.69282 5.76614 5.84530 5.92390 5.98321 6.01252 6.07655 6.10390 6.15776 6.23996 6.28857 6.36362 6.48210 6.53871 6.62832 6.64358 6.70299 6.84596 6.97851 7.15857 7.41800 7.48912 7.71066 8.24788 8.43825 9.54868 10.13657 10.48414 11.47321 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.003094 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.950314 B = 9048.884599 C =10030.699845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.044 0.956 4 N -0.723 5.723 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.903 3.097 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.089 4.089 14 C -0.120 4.120 15 C 0.106 3.894 16 N -0.600 5.600 17 C 0.600 3.400 18 O -0.545 6.545 19 C -0.284 4.284 20 C 0.084 3.916 21 N -0.295 5.295 22 N -0.361 5.361 23 C 0.098 3.902 24 C 0.171 3.829 25 C -0.121 4.121 26 C -0.158 4.158 27 C -0.151 4.151 28 C 0.113 3.887 29 C -0.128 4.128 30 H 0.050 0.950 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.189 0.811 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.118 0.882 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.116 0.884 49 H 0.066 0.934 50 H 0.089 0.911 51 H 0.078 0.922 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.107 5.821 -19.495 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.364 5.364 5 C -0.366 4.366 6 H 0.086 0.914 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.735 3.265 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.109 4.109 14 C -0.158 4.158 15 C -0.016 4.016 16 N -0.333 5.333 17 C 0.389 3.611 18 O -0.424 6.424 19 C -0.299 4.299 20 C -0.103 4.103 21 N -0.114 5.114 22 N -0.141 5.141 23 C -0.043 4.043 24 C 0.040 3.960 25 C -0.141 4.141 26 C -0.195 4.195 27 C -0.188 4.188 28 C -0.009 4.009 29 C -0.166 4.166 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.206 0.794 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.136 0.864 45 H 0.125 0.875 46 H 0.120 0.880 47 H 0.117 0.883 48 H 0.135 0.865 49 H 0.084 0.916 50 H 0.107 0.893 51 H 0.096 0.904 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.239 5.816 -19.737 22.164 hybrid contribution -0.499 0.317 1.177 1.317 sum 7.740 6.133 -18.560 21.024 Atomic orbital electron populations 1.22495 0.99584 1.00736 0.99802 1.20211 0.91535 0.95277 0.86131 0.93832 1.42405 1.78091 1.10613 1.05273 1.19178 1.36214 0.93766 0.87451 0.91445 1.24689 1.02393 0.95935 0.97887 1.69640 1.51117 1.08593 1.28892 0.86325 0.77726 0.78617 0.83863 1.21384 1.21765 1.21409 1.21377 0.95015 0.99887 0.94573 1.21860 0.95871 1.00894 0.97211 1.21899 0.98500 0.97017 0.84212 1.48098 1.06915 1.60678 1.17608 1.17230 0.85036 0.76276 0.82600 1.90733 1.74906 1.47997 1.28773 1.19813 0.94238 0.92740 1.23134 1.23889 0.89508 0.99175 0.97765 1.77186 1.20540 0.88414 1.25243 1.48144 1.05480 1.04924 1.55513 1.21931 0.84490 0.94329 1.03548 1.20364 0.84475 0.94057 0.97071 1.20511 0.95820 0.89819 1.07995 1.23195 0.92988 1.03931 0.99423 1.23219 1.00416 1.03396 0.91801 1.21642 0.78966 1.00891 0.99424 1.22018 1.01117 0.99562 0.93907 0.93101 0.94297 0.93607 0.78340 0.93560 0.91407 0.92129 0.89151 0.91360 0.89911 0.79403 0.90432 0.89410 0.88674 0.86415 0.87497 0.87955 0.88318 0.86533 0.91595 0.89304 0.90404 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.14 37.16 0.34 -2.55 16 2 C 0.18 3.34 2.47 -67.93 -0.17 3.17 16 3 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 4 N -0.72 -17.19 4.41 -53.42 -0.24 -17.43 16 5 C -0.23 -6.33 9.93 -15.06 -0.15 -6.48 16 6 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.55 13.06 55.49 0.72 -26.82 16 9 Si 0.90 22.13 29.55 -169.99 -5.02 17.11 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C -0.09 -1.35 1.79 -90.58 -0.16 -1.51 16 14 C -0.12 -1.83 5.22 -26.61 -0.14 -1.97 16 15 C 0.11 1.37 6.23 -3.71 -0.02 1.34 16 16 N -0.60 -7.70 2.93 -174.04 -0.51 -8.21 16 17 C 0.60 8.30 4.59 -12.52 -0.06 8.24 16 18 O -0.55 -8.62 13.59 5.27 0.07 -8.55 16 19 C -0.28 -3.72 4.54 -105.07 -0.48 -4.20 16 20 C 0.08 1.02 10.52 -16.98 -0.18 0.85 16 21 N -0.29 -3.80 12.50 30.86 0.39 -3.41 16 22 N -0.36 -4.08 3.98 -63.35 -0.25 -4.33 16 23 C 0.10 0.66 11.16 59.84 0.67 1.33 16 24 C 0.17 2.06 6.66 -81.60 -0.54 1.52 16 25 C -0.12 -1.22 5.95 -91.77 -0.55 -1.76 16 26 C -0.16 -1.72 9.58 -26.73 -0.26 -1.97 16 27 C -0.15 -1.51 9.70 -26.73 -0.26 -1.77 16 28 C 0.11 1.36 6.41 -3.71 -0.02 1.34 16 29 C -0.13 -1.60 5.04 -26.61 -0.13 -1.74 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.56 6.40 -51.93 -0.33 0.22 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.38 9.69 7.58 -40.82 -0.31 9.38 16 34 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.63 7.41 -51.93 -0.38 1.25 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.06 5.32 -51.93 -0.28 0.79 16 40 H 0.19 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.43 7.34 -51.93 -0.38 0.05 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.12 0.89 7.35 -51.93 -0.38 0.51 16 45 H 0.11 1.40 4.77 -51.93 -0.25 1.16 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.12 1.45 6.46 -51.92 -0.34 1.11 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 1.10 7.04 -51.93 -0.37 0.73 16 51 H 0.08 0.91 6.36 -51.93 -0.33 0.58 16 52 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 403.64 15.07 6.08 6.08 Total: -1.00 -32.51 403.64 -9.35 -41.85 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -8.38 Total: 10.34 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -2.21 Total: -6.63 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.11 Total: -60.20 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.07 Total: -8.55 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.51 -9.35 -41.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481345942.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.687 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds