Wall clock time and date at job start Wed Apr 1 2020 03:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47574 * 2 1 4 4 N 1.46503 * 109.47079 * 120.00720 * 2 1 3 5 5 C 1.36941 * 119.99703 * 274.99616 * 4 2 1 6 6 H 1.08007 * 119.99838 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00165 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00069 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00091 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47478 * 60.00055 * 9 7 5 11 11 H 1.48500 * 109.47272 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47228 * 299.99573 * 9 7 5 13 13 C 1.53002 * 109.46955 * 240.00122 * 2 1 3 14 14 C 1.53041 * 109.45983 * 180.02562 * 13 2 1 15 15 C 1.53196 * 109.31329 * 178.61861 * 14 13 2 16 16 N 1.46924 * 108.77573 * 54.63250 * 15 14 13 17 17 C 1.34781 * 120.62892 * 126.37532 * 16 15 14 18 18 O 1.21604 * 119.99664 * 174.94294 * 17 16 15 19 19 C 1.47429 * 119.99964 * 354.93556 * 17 16 15 20 20 C 1.41295 * 126.41544 * 65.53113 * 19 17 16 21 21 N 1.30444 * 108.02097 * 179.97438 * 20 19 17 22 22 N 1.39938 * 108.89871 * 0.02562 * 21 20 19 23 23 C 1.46496 * 125.75136 * 179.97438 * 22 21 20 24 24 C 1.34260 * 108.49025 * 359.74151 * 22 21 20 25 25 C 1.50699 * 126.28720 * 180.24703 * 24 22 21 26 26 C 1.53000 * 117.49791 * 196.71604 * 25 24 22 27 27 C 1.52995 * 60.00129 * 252.51057 * 26 25 24 28 28 C 1.46924 * 118.73940 * 306.39414 * 16 15 14 29 29 C 1.53043 * 109.46055 * 60.00121 * 13 2 1 30 30 H 1.08998 * 109.46685 * 299.99685 * 1 2 3 31 31 H 1.08994 * 109.46858 * 59.99507 * 1 2 3 32 32 H 1.09001 * 109.46753 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00160 * 95.00185 * 4 2 1 34 34 H 0.96995 * 119.99954 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.45173 * 300.03428 * 13 2 1 36 36 H 1.09001 * 109.49702 * 298.56657 * 14 13 2 37 37 H 1.08996 * 109.50030 * 58.66684 * 14 13 2 38 38 H 1.09002 * 109.58424 * 294.84435 * 15 14 13 39 39 H 1.08994 * 109.70178 * 174.49202 * 15 14 13 40 40 H 1.07991 * 125.98490 * 359.97438 * 20 19 17 41 41 H 1.09002 * 109.47527 * 95.14850 * 23 22 21 42 42 H 1.09000 * 109.47179 * 215.14483 * 23 22 21 43 43 H 1.08995 * 109.47590 * 335.14547 * 23 22 21 44 44 H 1.08999 * 115.55779 * 342.42190 * 25 24 22 45 45 H 1.08997 * 117.50054 * 359.97438 * 26 25 24 46 46 H 1.08998 * 117.50001 * 145.02329 * 26 25 24 47 47 H 1.09003 * 117.50284 * 252.50848 * 27 26 25 48 48 H 1.09009 * 117.49964 * 107.48510 * 27 26 25 49 49 H 1.09002 * 109.58446 * 293.81884 * 28 16 15 50 50 H 1.08998 * 109.70281 * 173.46938 * 28 16 15 51 51 H 1.09000 * 109.49301 * 301.34096 * 29 13 2 52 52 H 1.08999 * 109.49742 * 61.39680 * 29 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6908 1.1961 5 6 2.1492 -0.0077 2.3758 6 1 1.8920 1.0402 2.4244 7 6 2.6124 -0.6620 3.5089 8 7 2.9253 -1.9391 3.4498 9 14 2.7901 0.2697 5.1182 10 1 1.4675 0.8054 5.5289 11 1 3.3004 -0.6485 6.1680 12 1 3.7447 1.3928 4.9372 13 6 2.0400 -0.7212 -1.2493 14 6 3.5704 -0.7217 -1.2487 15 6 4.0773 -1.4744 -2.4829 16 7 3.4744 -0.8767 -3.6821 17 6 4.2478 -0.4571 -4.7031 18 8 3.7342 -0.0493 -5.7271 19 6 5.7164 -0.4924 -4.5783 20 6 6.5205 -1.6481 -4.4593 21 7 7.7649 -1.2666 -4.3724 22 7 7.8158 0.1306 -4.4302 23 6 9.0308 0.9464 -4.3645 24 6 6.5637 0.5972 -4.5611 25 6 6.1577 2.0447 -4.6665 26 6 4.6871 2.3858 -4.4179 27 6 5.2562 2.4421 -5.8370 28 6 2.0126 -0.7448 -3.7469 29 6 1.5297 0.0005 -2.4987 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6319 1.1524 34 1 3.2486 -2.3963 4.2418 35 1 1.6760 -1.7486 -1.2493 36 1 3.9345 0.3054 -1.2741 37 1 3.9338 -1.2148 -0.3472 38 1 3.7906 -2.5238 -2.4141 39 1 5.1628 -1.3953 -2.5415 40 1 6.1669 -2.6683 -4.4432 41 1 9.3668 1.1800 -5.3748 42 1 8.8187 1.8718 -3.8291 43 1 9.8112 0.3944 -3.8407 44 1 6.9047 2.7676 -4.3386 45 1 4.0132 1.5633 -4.1786 46 1 4.4664 3.3333 -3.9263 47 1 5.4098 3.4266 -6.2791 48 1 4.9567 1.6565 -6.5309 49 1 1.5575 -1.7346 -3.7813 50 1 1.7335 -0.1832 -4.6385 51 1 0.4400 0.0216 -2.4870 52 1 1.9131 1.0207 -2.5116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481345942.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:32 Heat of formation + Delta-G solvation = 61.847723 kcal Electronic energy + Delta-G solvation = -31955.448837 eV Core-core repulsion = 27957.002637 eV Total energy + Delta-G solvation = -3998.446199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.69288 -40.86418 -39.12585 -37.90864 -36.74999 -34.70957 -34.30266 -32.52609 -32.03861 -31.06800 -29.90539 -28.08553 -26.65117 -25.70786 -24.75810 -23.88537 -23.45516 -22.92500 -22.04819 -21.29110 -20.85026 -19.69014 -19.08743 -18.55039 -17.59073 -17.01847 -16.74770 -16.52172 -15.97139 -15.70590 -15.57329 -15.48990 -15.44100 -15.06778 -14.89156 -14.68838 -14.49384 -14.17534 -14.01310 -13.64832 -13.55113 -13.48166 -13.34969 -12.96857 -12.83802 -12.73547 -12.59217 -12.39811 -12.27106 -12.20259 -12.14345 -12.09163 -11.95518 -11.80215 -11.45719 -11.38436 -11.29813 -11.15203 -10.89539 -10.79355 -10.24131 -9.64147 -9.45404 -8.92149 -7.88921 -5.14888 0.55985 1.27669 1.39222 1.48206 1.49790 1.55778 1.73385 2.20081 2.59398 2.92813 3.33155 3.44671 3.45119 3.73006 3.81367 3.84135 3.87574 3.93373 4.01702 4.02750 4.21625 4.25332 4.30700 4.38042 4.41759 4.48243 4.52700 4.60416 4.63328 4.64678 4.68220 4.77139 4.84904 4.86279 4.91564 4.96451 4.97960 5.08863 5.10567 5.15491 5.18100 5.26460 5.29888 5.36249 5.42491 5.52636 5.56860 5.67478 5.73437 5.86669 6.33926 6.42753 6.52892 7.19977 7.40368 8.19294 8.42016 9.34205 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.003094 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.950314 B = 9048.884599 C =10030.699845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.174 3.826 3 H 0.034 0.966 4 N -0.732 5.732 5 C -0.232 4.232 6 H 0.069 0.931 7 C -0.073 4.073 8 N -0.967 5.967 9 Si 0.963 3.037 10 H -0.281 1.281 11 H -0.298 1.298 12 H -0.281 1.281 13 C -0.078 4.078 14 C -0.111 4.111 15 C 0.118 3.882 16 N -0.598 5.598 17 C 0.605 3.395 18 O -0.568 6.568 19 C -0.309 4.309 20 C 0.078 3.922 21 N -0.318 5.318 22 N -0.360 5.360 23 C 0.086 3.914 24 C 0.165 3.835 25 C -0.117 4.117 26 C -0.170 4.170 27 C -0.143 4.143 28 C 0.115 3.885 29 C -0.116 4.116 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.205 0.795 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.147 0.853 45 H 0.083 0.917 46 H 0.118 0.882 47 H 0.126 0.874 48 H 0.090 0.910 49 H 0.080 0.920 50 H 0.089 0.911 51 H 0.095 0.905 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.255 7.372 -20.564 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 H 0.052 0.948 4 N -0.372 5.372 5 C -0.364 4.364 6 H 0.087 0.913 7 C -0.265 4.265 8 N -0.619 5.619 9 Si 0.793 3.207 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.207 1.207 13 C -0.098 4.098 14 C -0.149 4.149 15 C -0.005 4.005 16 N -0.330 5.330 17 C 0.394 3.606 18 O -0.449 6.449 19 C -0.324 4.324 20 C -0.108 4.108 21 N -0.138 5.138 22 N -0.139 5.139 23 C -0.053 4.053 24 C 0.033 3.967 25 C -0.137 4.137 26 C -0.207 4.207 27 C -0.181 4.181 28 C -0.007 4.007 29 C -0.154 4.154 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.205 0.795 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.222 0.778 41 H 0.113 0.887 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.165 0.835 45 H 0.101 0.899 46 H 0.136 0.864 47 H 0.144 0.856 48 H 0.108 0.892 49 H 0.098 0.902 50 H 0.107 0.893 51 H 0.113 0.887 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.380 7.399 -20.832 23.642 hybrid contribution -0.534 -0.107 1.439 1.539 sum 7.845 7.292 -19.393 22.154 Atomic orbital electron populations 1.22357 0.97965 1.00819 1.00547 1.20433 0.92519 0.94661 0.85840 0.94807 1.42569 1.78317 1.10230 1.06058 1.19518 1.34403 0.93941 0.88559 0.91256 1.25394 1.03392 0.96788 1.00948 1.69788 1.52895 1.09982 1.29202 0.85365 0.77783 0.77404 0.80155 1.20767 1.22399 1.20701 1.21246 0.94707 0.99737 0.94073 1.21695 0.96088 1.00111 0.97046 1.21748 0.98499 0.97133 0.83084 1.48090 1.07267 1.60407 1.17220 1.17306 0.85403 0.75591 0.82271 1.90716 1.75419 1.49079 1.29673 1.19925 0.94038 0.93658 1.24790 1.24188 0.89323 0.99890 0.97395 1.77124 1.20899 0.89708 1.26064 1.48500 1.06407 1.04625 1.54408 1.22329 0.83176 0.94675 1.05163 1.20726 0.84734 0.94886 0.96385 1.20707 0.96012 0.89254 1.07737 1.23190 0.93256 1.03864 1.00410 1.23168 0.99990 1.03858 0.91036 1.21685 0.78504 1.01578 0.98948 1.21923 1.02005 0.98968 0.92518 0.95210 0.90667 0.93822 0.79513 0.94268 0.91360 0.93248 0.92314 0.90154 0.89860 0.77839 0.88661 0.87224 0.88149 0.83491 0.89887 0.86355 0.85590 0.89159 0.90214 0.89273 0.88695 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 9.14 71.98 0.66 -4.58 16 2 C 0.17 6.42 2.47 44.99 0.11 6.53 16 3 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 4 N -0.73 -35.23 4.41 -322.93 -1.42 -36.65 16 5 C -0.23 -12.60 9.93 84.03 0.83 -11.76 16 6 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16 7 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 8 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 9 Si 0.96 45.84 29.55 68.60 2.03 47.86 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C -0.08 -2.30 1.79 -10.76 -0.02 -2.32 16 14 C -0.11 -3.41 5.22 30.67 0.16 -3.25 16 15 C 0.12 2.98 6.23 86.36 0.54 3.52 16 16 N -0.60 -14.83 2.93 -822.79 -2.41 -17.24 16 17 C 0.61 16.47 4.59 86.66 0.40 16.87 16 18 O -0.57 -17.86 13.59 -4.04 -0.05 -17.91 16 19 C -0.31 -7.96 4.54 -20.15 -0.09 -8.05 16 20 C 0.08 1.89 10.52 85.65 0.90 2.79 16 21 N -0.32 -8.03 12.50 -56.28 -0.70 -8.73 16 22 N -0.36 -7.67 3.98 -354.33 -1.41 -9.08 16 23 C 0.09 0.98 11.16 127.77 1.43 2.41 16 24 C 0.16 3.79 6.66 42.14 0.28 4.07 16 25 C -0.12 -2.12 5.95 -11.54 -0.07 -2.19 16 26 C -0.17 -3.45 9.58 30.59 0.29 -3.16 16 27 C -0.14 -2.64 9.70 30.59 0.30 -2.34 16 28 C 0.11 2.58 6.41 86.36 0.55 3.13 16 29 C -0.12 -2.69 5.04 30.67 0.15 -2.53 16 30 H 0.03 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.95 6.40 -2.39 -0.02 1.93 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.37 19.31 7.58 -92.71 -0.70 18.61 16 34 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 2.19 7.41 -2.39 -0.02 2.18 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.08 2.13 5.32 -2.39 -0.01 2.12 16 40 H 0.21 3.88 8.06 -2.92 -0.02 3.85 16 41 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 42 H 0.11 0.76 7.34 -2.39 -0.02 0.74 16 43 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.15 1.73 7.35 -2.39 -0.02 1.72 16 45 H 0.08 2.13 4.77 -2.39 -0.01 2.12 16 46 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.09 2.21 6.46 -2.38 -0.02 2.19 16 49 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.09 2.07 7.04 -2.39 -0.02 2.05 16 51 H 0.09 1.91 6.36 -2.39 -0.02 1.90 16 52 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -71.19 403.64 3.43 -67.77 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: 0.23 Total: 36.44 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 6.89 Total: -4.54 kcal Atomic # 7 Polarization: -123.95 SS G_CDS: -5.67 Total: -129.62 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.05 Total: -17.91 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -71.19 3.43 -67.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481345942.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.616 kcal (2) G-P(sol) polarization free energy of solvation -71.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds