Wall clock time and date at job start Wed Apr 1 2020 05:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47408 * 2 1 4 4 N 1.46498 * 109.47432 * 239.99635 * 2 1 3 5 5 C 1.36933 * 119.99953 * 84.99731 * 4 2 1 6 6 H 1.07994 * 120.00078 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00077 * 179.97438 * 5 4 2 8 8 N 1.31625 * 119.99563 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47047 * 60.00614 * 9 7 5 11 11 H 1.48503 * 109.47243 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47430 * 300.00539 * 9 7 5 13 13 C 1.53004 * 109.46985 * 119.99494 * 2 1 3 14 14 H 1.09001 * 109.50037 * 179.97438 * 13 2 1 15 15 C 1.53039 * 109.50102 * 300.00396 * 13 2 1 16 16 C 1.53040 * 109.54105 * 181.31711 * 15 13 2 17 17 C 1.53198 * 109.30919 * 298.63154 * 16 15 13 18 18 N 1.46926 * 108.77472 * 54.63573 * 17 16 15 19 19 C 1.34773 * 120.62931 * 126.36822 * 18 17 16 20 20 O 1.21606 * 120.00030 * 185.62956 * 19 18 17 21 21 C 1.47430 * 120.00224 * 5.63335 * 19 18 17 22 22 C 1.41471 * 126.48315 * 40.20047 * 21 19 18 23 23 N 1.30610 * 108.06663 * 179.97438 * 22 21 19 24 24 N 1.39619 * 108.87676 * 359.97438 * 23 22 21 25 25 C 1.34602 * 108.33820 * 0.04230 * 24 23 22 26 26 C 1.50800 * 124.57747 * 179.69013 * 25 24 23 27 27 C 1.53332 * 108.25758 * 344.68713 * 26 25 24 28 28 C 1.53166 * 109.22928 * 48.07848 * 27 26 25 29 29 C 1.46688 * 127.23287 * 180.02562 * 24 23 22 30 30 C 1.46925 * 118.73839 * 306.63792 * 18 17 16 31 31 H 1.09000 * 109.46432 * 60.00171 * 1 2 3 32 32 H 1.08997 * 109.47408 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46827 * 300.00435 * 1 2 3 34 34 H 0.97002 * 119.99610 * 265.00605 * 4 2 1 35 35 H 0.97007 * 119.99570 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.46111 * 61.29103 * 15 13 2 37 37 H 1.09008 * 109.44351 * 301.32727 * 15 13 2 38 38 H 1.08992 * 109.49737 * 178.68416 * 16 15 13 39 39 H 1.08999 * 109.49752 * 58.58350 * 16 15 13 40 40 H 1.09000 * 109.58480 * 294.84470 * 17 16 15 41 41 H 1.08999 * 109.58320 * 174.42414 * 17 16 15 42 42 H 1.08002 * 125.97134 * 359.96649 * 22 21 19 43 43 H 1.08997 * 109.71936 * 104.27623 * 26 25 24 44 44 H 1.08997 * 109.72103 * 224.92372 * 26 25 24 45 45 H 1.08997 * 109.36690 * 288.20970 * 27 26 25 46 46 H 1.09007 * 109.57636 * 168.06883 * 27 26 25 47 47 H 1.09000 * 109.45593 * 170.86352 * 28 27 26 48 48 H 1.08997 * 109.44424 * 50.90962 * 28 27 26 49 49 H 1.08999 * 109.57123 * 282.41057 * 29 24 23 50 50 H 1.08999 * 109.57423 * 42.79217 * 29 24 23 51 51 H 1.09003 * 109.58578 * 173.14450 * 30 18 17 52 52 H 1.08997 * 109.59019 * 293.57200 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8927 1.0403 -2.4242 7 6 2.6125 -0.6619 -3.5089 8 7 2.9256 -1.9390 -3.4496 9 14 2.7915 0.2700 -5.1179 10 1 3.7467 1.3925 -4.9361 11 1 3.3005 -0.6485 -6.1680 12 1 1.4694 0.8068 -5.5288 13 6 2.0400 -0.7212 1.2493 14 1 3.1300 -0.7219 1.2496 15 6 1.5301 -0.0002 2.4993 16 6 2.0666 -0.7014 3.7493 17 6 1.5532 -2.1445 3.7803 18 7 1.9149 -2.8023 2.5173 19 6 2.5905 -3.9684 2.5194 20 8 2.9734 -4.4511 1.4709 21 6 2.8654 -4.6590 3.7926 22 6 1.9798 -4.7867 4.8885 23 7 2.5888 -5.4641 5.8245 24 7 3.8699 -5.7970 5.3804 25 6 4.0302 -5.3010 4.1394 26 6 5.2857 -5.4434 3.3163 27 6 6.4231 -5.8807 4.2470 28 6 5.9454 -7.0507 5.1123 29 6 4.8932 -6.5541 6.1094 30 6 1.5312 -2.1616 1.2520 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2490 -1.6319 -1.1524 35 1 3.2490 -2.3963 -4.2417 36 1 0.4404 -0.0204 2.5110 37 1 1.8741 1.0341 2.4873 38 1 1.7222 -0.1736 4.6386 39 1 3.1564 -0.7034 3.7260 40 1 0.4693 -2.1443 3.8950 41 1 2.0108 -2.6772 4.6139 42 1 0.9757 -4.3927 4.9419 43 1 5.1352 -6.1969 2.5433 44 1 5.5337 -4.4873 2.8553 45 1 6.7072 -5.0458 4.8875 46 1 7.2815 -6.1937 3.6525 47 1 6.7921 -7.4693 5.6564 48 1 5.5081 -7.8188 4.4745 49 1 5.3666 -5.9090 6.8495 50 1 4.4312 -7.4066 6.6074 51 1 1.9743 -2.7057 0.4179 52 1 0.4454 -2.1629 1.1563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482477267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:10 Heat of formation + Delta-G solvation = 44.417461 kcal Electronic energy + Delta-G solvation = -31655.140501 eV Core-core repulsion = 27655.938468 eV Total energy + Delta-G solvation = -3999.202032 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.87947 -39.75070 -37.59989 -36.84727 -35.30224 -32.97919 -32.61903 -31.75482 -30.70628 -29.89029 -28.76722 -27.65496 -25.40528 -24.66231 -24.34995 -23.15517 -22.61636 -22.09461 -20.95370 -19.82633 -18.84141 -18.42154 -17.48078 -16.95617 -16.24264 -15.70020 -15.56353 -15.02863 -14.90982 -14.74331 -14.56863 -14.46532 -14.24828 -14.01356 -13.88687 -13.65549 -13.50592 -13.00640 -12.80379 -12.73467 -12.50844 -12.32554 -12.24588 -11.81206 -11.63177 -11.47442 -11.44229 -11.36983 -11.01799 -10.91019 -10.90462 -10.78059 -10.52191 -10.35769 -10.19630 -10.12041 -9.81511 -9.57399 -9.48239 -9.40336 -8.81709 -8.67073 -8.24504 -6.85864 -5.65053 -2.94486 1.50822 2.11297 2.16481 3.15946 3.47057 3.49923 3.53981 3.55461 3.99557 4.20263 4.31038 4.33294 4.61005 4.66146 4.78874 4.87706 4.91841 4.98534 5.02531 5.04783 5.18276 5.21848 5.33986 5.35429 5.38202 5.46419 5.49284 5.59635 5.63698 5.67964 5.75671 5.79245 5.82888 5.88474 5.95227 5.97495 6.06354 6.17208 6.22583 6.28712 6.34295 6.46450 6.53196 6.67584 6.68865 6.77115 6.90549 6.98193 7.21460 7.43315 7.71385 7.78499 8.52100 8.52960 9.63354 10.22346 10.56508 11.56922 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.002841 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.396779 B = 9853.559840 C =11298.201868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.068 0.932 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.103 4.103 14 H 0.072 0.928 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.104 3.896 18 N -0.605 5.605 19 C 0.590 3.410 20 O -0.532 6.532 21 C -0.282 4.282 22 C 0.079 3.921 23 N -0.299 5.299 24 N -0.362 5.362 25 C 0.149 3.851 26 C -0.063 4.063 27 C -0.128 4.128 28 C -0.139 4.139 29 C 0.132 3.868 30 C 0.118 3.882 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.190 0.810 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.078 0.922 49 H 0.086 0.914 50 H 0.094 0.906 51 H 0.101 0.899 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.949 -6.806 24.378 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.367 5.367 5 C -0.370 4.370 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.123 4.123 14 H 0.090 0.910 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.019 4.019 18 N -0.338 5.338 19 C 0.378 3.622 20 O -0.408 6.408 21 C -0.296 4.296 22 C -0.108 4.108 23 N -0.118 5.118 24 N -0.143 5.143 25 C 0.018 3.982 26 C -0.102 4.102 27 C -0.166 4.166 28 C -0.177 4.177 29 C 0.011 3.989 30 C -0.003 4.003 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.220 0.780 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.206 0.794 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.112 0.888 48 H 0.097 0.903 49 H 0.104 0.896 50 H 0.113 0.887 51 H 0.119 0.881 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.168 -7.553 24.946 26.256 hybrid contribution 0.032 0.603 -1.603 1.713 sum 3.201 -6.949 23.343 24.565 Atomic orbital electron populations 1.22572 0.99577 1.00872 0.99897 1.20167 0.91785 0.95229 0.85829 0.93436 1.42515 1.78116 1.10853 1.05266 1.19169 1.36655 0.93774 0.87437 0.91369 1.24743 1.02303 0.95953 0.97952 1.69674 1.50657 1.08539 1.28844 0.86315 0.77671 0.78579 0.83873 1.21409 1.21781 1.21400 1.21685 1.00932 0.94455 0.95223 0.90978 1.21622 1.00849 0.99100 0.93639 1.21910 1.01319 0.95255 0.98655 1.21877 0.99872 0.93611 0.86568 1.47955 1.56663 1.21644 1.07541 1.17295 0.77465 0.80192 0.87287 1.90836 1.51351 1.65897 1.32744 1.19853 0.96410 1.14606 0.98758 1.24104 0.99913 0.96811 0.89996 1.77068 0.90918 1.20396 1.23429 1.48498 1.11567 1.42379 1.11891 1.21308 0.96757 0.93478 0.86656 1.20543 0.88297 1.04787 0.96535 1.21714 0.98432 0.98042 0.98380 1.21999 0.98337 0.99122 0.98258 1.21891 0.86552 0.95810 0.94629 1.21709 0.99731 0.93256 0.85644 0.92971 0.93273 0.94263 0.77972 0.93507 0.91438 0.91803 0.91169 0.91762 0.91592 0.89672 0.79364 0.88104 0.88321 0.91136 0.89729 0.88797 0.90323 0.89602 0.88735 0.88069 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 8.79 37.16 0.33 -2.68 16 2 C 0.18 3.57 2.72 -67.93 -0.18 3.39 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.73 -18.48 5.04 -53.43 -0.27 -18.75 16 5 C -0.24 -6.75 9.93 -15.06 -0.15 -6.90 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 9 Si 0.90 22.89 29.55 -169.99 -5.02 17.86 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C -0.10 -1.72 2.32 -90.72 -0.21 -1.93 16 14 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.11 -1.45 4.78 -26.69 -0.13 -1.57 16 16 C -0.13 -1.44 6.08 -26.61 -0.16 -1.60 16 17 C 0.10 1.15 5.49 -3.71 -0.02 1.13 16 18 N -0.61 -9.05 2.98 -174.29 -0.52 -9.57 16 19 C 0.59 9.87 7.46 -12.52 -0.09 9.78 16 20 O -0.53 -11.15 16.16 5.27 0.09 -11.06 16 21 C -0.28 -3.90 5.19 -105.21 -0.55 -4.45 16 22 C 0.08 0.93 9.64 -16.84 -0.16 0.77 16 23 N -0.30 -3.67 12.54 30.93 0.39 -3.28 16 24 N -0.36 -3.97 4.01 -56.40 -0.23 -4.20 16 25 C 0.15 1.84 6.65 -81.62 -0.54 1.30 16 26 C -0.06 -0.66 5.80 -27.66 -0.16 -0.82 16 27 C -0.13 -0.87 5.97 -26.47 -0.16 -1.03 16 28 C -0.14 -0.75 5.93 -26.52 -0.16 -0.91 16 29 C 0.13 0.90 7.27 -3.82 -0.03 0.87 16 30 C 0.12 2.04 5.21 -3.93 -0.02 2.02 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.88 6.32 -51.93 -0.33 0.55 16 33 H 0.04 0.57 6.46 -51.93 -0.34 0.23 16 34 H 0.39 10.61 6.17 -40.82 -0.25 10.35 16 35 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.07 0.81 6.50 -51.93 -0.34 0.47 16 37 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.87 4.79 -51.93 -0.25 0.62 16 42 H 0.19 1.72 7.37 -52.49 -0.39 1.33 16 43 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 46 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 47 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 49 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 51 H 0.10 2.18 5.58 -51.93 -0.29 1.89 16 52 H 0.07 1.14 6.16 -51.93 -0.32 0.82 16 LS Contribution 396.89 15.07 5.98 5.98 Total: -1.00 -35.33 396.89 -9.73 -45.06 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.38 Total: 9.33 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -2.49 Total: -3.12 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: 0.10 Total: -64.05 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.33 -9.73 -45.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482477267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.481 kcal (2) G-P(sol) polarization free energy of solvation -35.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds