Wall clock time and date at job start Wed Apr 1 2020 05:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47408 * 2 1 4 4 N 1.46498 * 109.47432 * 239.99635 * 2 1 3 5 5 C 1.36933 * 119.99953 * 84.99731 * 4 2 1 6 6 H 1.07994 * 120.00078 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00077 * 179.97438 * 5 4 2 8 8 N 1.31625 * 119.99563 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47047 * 60.00614 * 9 7 5 11 11 H 1.48503 * 109.47243 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47430 * 300.00539 * 9 7 5 13 13 C 1.53004 * 109.46985 * 119.99494 * 2 1 3 14 14 H 1.09001 * 109.50037 * 179.97438 * 13 2 1 15 15 C 1.53039 * 109.50102 * 300.00396 * 13 2 1 16 16 C 1.53040 * 109.54105 * 181.31711 * 15 13 2 17 17 C 1.53198 * 109.30919 * 298.63154 * 16 15 13 18 18 N 1.46926 * 108.77472 * 54.63573 * 17 16 15 19 19 C 1.34773 * 120.62931 * 126.36822 * 18 17 16 20 20 O 1.21606 * 120.00030 * 185.62956 * 19 18 17 21 21 C 1.47430 * 120.00224 * 5.63335 * 19 18 17 22 22 C 1.41471 * 126.48315 * 40.20047 * 21 19 18 23 23 N 1.30610 * 108.06663 * 179.97438 * 22 21 19 24 24 N 1.39619 * 108.87676 * 359.97438 * 23 22 21 25 25 C 1.34602 * 108.33820 * 0.04230 * 24 23 22 26 26 C 1.50800 * 124.57747 * 179.69013 * 25 24 23 27 27 C 1.53332 * 108.25758 * 344.68713 * 26 25 24 28 28 C 1.53166 * 109.22928 * 48.07848 * 27 26 25 29 29 C 1.46688 * 127.23287 * 180.02562 * 24 23 22 30 30 C 1.46925 * 118.73839 * 306.63792 * 18 17 16 31 31 H 1.09000 * 109.46432 * 60.00171 * 1 2 3 32 32 H 1.08997 * 109.47408 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46827 * 300.00435 * 1 2 3 34 34 H 0.97002 * 119.99610 * 265.00605 * 4 2 1 35 35 H 0.97007 * 119.99570 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.46111 * 61.29103 * 15 13 2 37 37 H 1.09008 * 109.44351 * 301.32727 * 15 13 2 38 38 H 1.08992 * 109.49737 * 178.68416 * 16 15 13 39 39 H 1.08999 * 109.49752 * 58.58350 * 16 15 13 40 40 H 1.09000 * 109.58480 * 294.84470 * 17 16 15 41 41 H 1.08999 * 109.58320 * 174.42414 * 17 16 15 42 42 H 1.08002 * 125.97134 * 359.96649 * 22 21 19 43 43 H 1.08997 * 109.71936 * 104.27623 * 26 25 24 44 44 H 1.08997 * 109.72103 * 224.92372 * 26 25 24 45 45 H 1.08997 * 109.36690 * 288.20970 * 27 26 25 46 46 H 1.09007 * 109.57636 * 168.06883 * 27 26 25 47 47 H 1.09000 * 109.45593 * 170.86352 * 28 27 26 48 48 H 1.08997 * 109.44424 * 50.90962 * 28 27 26 49 49 H 1.08999 * 109.57123 * 282.41057 * 29 24 23 50 50 H 1.08999 * 109.57423 * 42.79217 * 29 24 23 51 51 H 1.09003 * 109.58578 * 173.14450 * 30 18 17 52 52 H 1.08997 * 109.59019 * 293.57200 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8927 1.0403 -2.4242 7 6 2.6125 -0.6619 -3.5089 8 7 2.9256 -1.9390 -3.4496 9 14 2.7915 0.2700 -5.1179 10 1 3.7467 1.3925 -4.9361 11 1 3.3005 -0.6485 -6.1680 12 1 1.4694 0.8068 -5.5288 13 6 2.0400 -0.7212 1.2493 14 1 3.1300 -0.7219 1.2496 15 6 1.5301 -0.0002 2.4993 16 6 2.0666 -0.7014 3.7493 17 6 1.5532 -2.1445 3.7803 18 7 1.9149 -2.8023 2.5173 19 6 2.5905 -3.9684 2.5194 20 8 2.9734 -4.4511 1.4709 21 6 2.8654 -4.6590 3.7926 22 6 1.9798 -4.7867 4.8885 23 7 2.5888 -5.4641 5.8245 24 7 3.8699 -5.7970 5.3804 25 6 4.0302 -5.3010 4.1394 26 6 5.2857 -5.4434 3.3163 27 6 6.4231 -5.8807 4.2470 28 6 5.9454 -7.0507 5.1123 29 6 4.8932 -6.5541 6.1094 30 6 1.5312 -2.1616 1.2520 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 2.2490 -1.6319 -1.1524 35 1 3.2490 -2.3963 -4.2417 36 1 0.4404 -0.0204 2.5110 37 1 1.8741 1.0341 2.4873 38 1 1.7222 -0.1736 4.6386 39 1 3.1564 -0.7034 3.7260 40 1 0.4693 -2.1443 3.8950 41 1 2.0108 -2.6772 4.6139 42 1 0.9757 -4.3927 4.9419 43 1 5.1352 -6.1969 2.5433 44 1 5.5337 -4.4873 2.8553 45 1 6.7072 -5.0458 4.8875 46 1 7.2815 -6.1937 3.6525 47 1 6.7921 -7.4693 5.6564 48 1 5.5081 -7.8188 4.4745 49 1 5.3666 -5.9090 6.8495 50 1 4.4312 -7.4066 6.6074 51 1 1.9743 -2.7057 0.4179 52 1 0.4454 -2.1629 1.1563 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482477267.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:09 Heat of formation + Delta-G solvation = 21.051288 kcal Electronic energy + Delta-G solvation = -31656.153734 eV Core-core repulsion = 27655.938468 eV Total energy + Delta-G solvation = -4000.215266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.79413 -40.98768 -39.00176 -37.56479 -36.84533 -34.64432 -33.56237 -33.13750 -31.58065 -31.38948 -30.00350 -29.02553 -26.58982 -26.15814 -25.31751 -24.65963 -23.53551 -23.04569 -22.16389 -20.85710 -20.01725 -19.51604 -19.22397 -18.34827 -17.26530 -16.75976 -16.71154 -16.55593 -16.11607 -15.68646 -15.62963 -15.48901 -15.36580 -15.20499 -15.05532 -14.96642 -14.70774 -14.30243 -14.11929 -13.93835 -13.81597 -13.48006 -13.31537 -13.01350 -12.89702 -12.78467 -12.62710 -12.41301 -12.30337 -12.11337 -12.01848 -12.00005 -11.86566 -11.75238 -11.70833 -11.67085 -11.34837 -11.15240 -10.90692 -10.83707 -10.32935 -9.73917 -9.43475 -8.98108 -7.89680 -5.19122 0.53078 1.15662 1.34507 1.45439 1.49493 1.55569 1.97065 2.28463 2.57850 3.32387 3.42386 3.43782 3.68619 3.70616 3.74202 3.84340 3.92436 3.96208 4.04444 4.14888 4.21473 4.26763 4.30412 4.36353 4.37835 4.44242 4.60476 4.62836 4.63672 4.66566 4.74736 4.75869 4.86162 4.91903 4.94100 4.94714 4.96706 5.04393 5.12789 5.15996 5.17629 5.21074 5.27098 5.37721 5.40688 5.48152 5.56105 5.62915 5.73196 5.85817 6.31127 6.47943 6.55114 7.25320 7.36040 8.15385 8.36633 9.33506 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.002841 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.396779 B = 9853.559840 C =11298.201868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.046 0.954 4 N -0.741 5.741 5 C -0.237 4.237 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.973 3.027 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.276 1.276 13 C -0.090 4.090 14 H 0.041 0.959 15 C -0.107 4.107 16 C -0.127 4.127 17 C 0.099 3.901 18 N -0.601 5.601 19 C 0.585 3.415 20 O -0.592 6.592 21 C -0.308 4.308 22 C 0.087 3.913 23 N -0.310 5.310 24 N -0.356 5.356 25 C 0.145 3.855 26 C -0.066 4.066 27 C -0.121 4.121 28 C -0.132 4.132 29 C 0.120 3.880 30 C 0.127 3.873 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.370 0.630 35 H 0.248 0.752 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.049 0.951 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.215 0.785 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.098 0.902 47 H 0.129 0.871 48 H 0.069 0.931 49 H 0.106 0.894 50 H 0.109 0.891 51 H 0.047 0.953 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.282 -5.658 27.889 28.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.064 3.936 3 H 0.064 0.936 4 N -0.382 5.382 5 C -0.368 4.368 6 H 0.095 0.905 7 C -0.274 4.274 8 N -0.623 5.623 9 Si 0.802 3.198 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.202 1.202 13 C -0.110 4.110 14 H 0.059 0.941 15 C -0.145 4.145 16 C -0.165 4.165 17 C -0.023 4.023 18 N -0.332 5.332 19 C 0.374 3.626 20 O -0.473 6.473 21 C -0.323 4.323 22 C -0.100 4.100 23 N -0.130 5.130 24 N -0.136 5.136 25 C 0.012 3.988 26 C -0.105 4.105 27 C -0.159 4.159 28 C -0.170 4.170 29 C 0.001 3.999 30 C 0.004 3.996 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.203 0.797 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.232 0.768 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.147 0.853 48 H 0.088 0.912 49 H 0.124 0.876 50 H 0.127 0.873 51 H 0.066 0.934 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.469 -6.343 28.555 29.355 hybrid contribution 0.252 0.256 -2.600 2.625 sum 2.721 -6.087 25.954 26.797 Atomic orbital electron populations 1.22394 0.97232 1.00909 1.01101 1.20465 0.93288 0.94784 0.85067 0.93635 1.42799 1.78509 1.10387 1.06535 1.19619 1.34656 0.94178 0.88394 0.90460 1.25612 1.03257 0.96855 1.01670 1.69878 1.52768 1.10412 1.29292 0.85209 0.78001 0.77203 0.79343 1.20345 1.22533 1.20247 1.21510 0.99001 0.94329 0.96209 0.94063 1.21608 1.01894 0.99140 0.91841 1.21906 1.00461 0.95018 0.99126 1.22231 1.01805 0.93556 0.84663 1.48027 1.55853 1.21161 1.08207 1.17806 0.76694 0.80443 0.87639 1.90799 1.53878 1.67554 1.35034 1.19738 0.98087 1.16223 0.98223 1.24423 1.00562 0.96289 0.88739 1.77030 0.91593 1.20624 1.23705 1.48873 1.11752 1.41645 1.11373 1.21520 0.96873 0.92982 0.87441 1.20558 0.89548 1.03357 0.97013 1.21713 0.97135 0.98977 0.98049 1.22020 0.99022 0.98061 0.97864 1.22356 0.86089 0.96354 0.95087 1.21397 0.99672 0.93058 0.85425 0.94821 0.93805 0.89894 0.79749 0.94320 0.89490 0.90725 0.87238 0.93246 0.88653 0.88418 0.76844 0.89573 0.90491 0.90404 0.88354 0.85276 0.91179 0.87603 0.87314 0.93424 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.39 8.79 71.98 0.63 -4.76 16 2 C 0.17 6.89 2.72 44.99 0.12 7.01 16 3 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 4 N -0.74 -39.50 5.04 -322.94 -1.63 -41.13 16 5 C -0.24 -13.70 9.93 84.03 0.83 -12.86 16 6 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 7 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 8 N -0.97 -63.71 13.06 21.65 0.28 -63.42 16 9 Si 0.97 48.27 29.55 68.60 2.03 50.30 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 13 C -0.09 -3.06 2.32 -10.86 -0.03 -3.08 16 14 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 15 C -0.11 -2.41 4.78 30.62 0.15 -2.27 16 16 C -0.13 -2.35 6.08 30.67 0.19 -2.16 16 17 C 0.10 1.94 5.49 86.36 0.47 2.41 16 18 N -0.60 -18.29 2.98 -823.59 -2.45 -20.74 16 19 C 0.58 20.76 7.46 86.67 0.65 21.41 16 20 O -0.59 -27.34 16.16 -4.05 -0.07 -27.41 16 21 C -0.31 -8.68 5.19 -20.25 -0.10 -8.78 16 22 C 0.09 1.92 9.64 85.67 0.83 2.75 16 23 N -0.31 -7.05 12.54 -56.07 -0.70 -7.76 16 24 N -0.36 -7.32 4.01 -332.34 -1.33 -8.65 16 25 C 0.14 3.63 6.65 41.98 0.28 3.91 16 26 C -0.07 -1.48 5.80 29.99 0.17 -1.31 16 27 C -0.12 -1.52 5.97 30.76 0.18 -1.33 16 28 C -0.13 -1.12 5.93 30.73 0.18 -0.94 16 29 C 0.12 1.33 7.27 86.42 0.63 1.95 16 30 C 0.13 4.59 5.21 86.22 0.45 5.04 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.54 6.32 -2.39 -0.02 1.53 16 33 H 0.08 2.12 6.46 -2.39 -0.02 2.10 16 34 H 0.37 21.88 6.17 -92.71 -0.57 21.31 16 35 H 0.25 15.84 8.31 -92.70 -0.77 15.06 16 36 H 0.09 1.67 6.50 -2.39 -0.02 1.66 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.10 1.74 4.79 -2.39 -0.01 1.72 16 42 H 0.22 3.33 7.37 -2.91 -0.02 3.31 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.08 0.88 8.12 -2.39 -0.02 0.86 16 46 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 48 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 49 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.05 2.26 5.58 -2.39 -0.01 2.24 16 52 H 0.08 2.66 6.16 -2.39 -0.01 2.64 16 Total: -1.00 -83.70 396.89 2.59 -81.12 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.36 Total: 35.21 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 6.10 Total: 2.49 kcal Atomic # 7 Polarization: -135.87 SS G_CDS: -5.83 Total: -141.71 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.07 Total: -27.41 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -83.70 2.59 -81.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482477267.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.168 kcal (2) G-P(sol) polarization free energy of solvation -83.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds