Wall clock time and date at job start Wed Apr 1 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 N 1.46502 * 109.46873 * 240.00578 * 2 1 3 5 5 C 1.36942 * 120.00083 * 84.99865 * 4 2 1 6 6 H 1.08002 * 119.99632 * 359.97438 * 5 4 2 7 7 C 1.38808 * 120.00105 * 180.02562 * 5 4 2 8 8 N 1.31625 * 120.00037 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00180 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46936 * 90.00040 * 9 7 5 11 11 H 1.48503 * 109.47094 * 210.00457 * 9 7 5 12 12 H 1.48500 * 109.46947 * 330.00039 * 9 7 5 13 13 C 1.52999 * 109.47417 * 120.00889 * 2 1 3 14 14 H 1.09004 * 109.52441 * 60.07620 * 13 2 1 15 15 C 1.53041 * 109.49315 * 299.99746 * 13 2 1 16 16 C 1.53042 * 109.53285 * 178.68433 * 15 13 2 17 17 C 1.53193 * 109.31680 * 61.36668 * 16 15 13 18 18 N 1.46927 * 108.77311 * 305.36470 * 17 16 15 19 19 C 1.34776 * 120.63143 * 233.58434 * 18 17 16 20 20 O 1.21604 * 120.00296 * 174.35271 * 19 18 17 21 21 C 1.47427 * 119.99648 * 354.36345 * 19 18 17 22 22 C 1.41472 * 126.48820 * 319.79038 * 21 19 18 23 23 N 1.30609 * 108.07209 * 179.81170 * 22 21 19 24 24 N 1.39628 * 108.87068 * 0.42437 * 23 22 21 25 25 C 1.34590 * 108.33925 * 359.75909 * 24 23 22 26 26 C 1.50811 * 124.57612 * 179.97438 * 25 24 23 27 27 C 1.53442 * 108.19708 * 344.32826 * 26 25 24 28 28 C 1.53160 * 109.12012 * 48.34630 * 27 26 25 29 29 C 1.46687 * 127.22689 * 179.79880 * 24 23 22 30 30 C 1.46924 * 118.74037 * 53.60373 * 18 17 16 31 31 H 1.09002 * 109.46979 * 299.99209 * 1 2 3 32 32 H 1.08997 * 109.47409 * 59.99260 * 1 2 3 33 33 H 1.09008 * 109.47276 * 179.97438 * 1 2 3 34 34 H 0.97001 * 120.00237 * 265.00175 * 4 2 1 35 35 H 0.96994 * 120.00069 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.46045 * 58.66718 * 15 13 2 37 37 H 1.08999 * 109.46428 * 298.70128 * 15 13 2 38 38 H 1.09002 * 109.49893 * 181.31921 * 16 15 13 39 39 H 1.09006 * 109.49952 * 301.37852 * 16 15 13 40 40 H 1.09000 * 109.58606 * 65.14881 * 17 16 15 41 41 H 1.08997 * 109.59000 * 185.43582 * 17 16 15 42 42 H 1.07997 * 125.96136 * 359.95528 * 22 21 19 43 43 H 1.09004 * 109.71626 * 104.00042 * 26 25 24 44 44 H 1.08998 * 109.71983 * 224.64989 * 26 25 24 45 45 H 1.08998 * 109.53105 * 168.23755 * 27 26 25 46 46 H 1.09005 * 109.53339 * 288.45687 * 27 26 25 47 47 H 1.09000 * 109.45986 * 50.78162 * 28 27 26 48 48 H 1.09003 * 109.46247 * 170.73874 * 28 27 26 49 49 H 1.09006 * 109.57588 * 42.74829 * 29 24 23 50 50 H 1.08996 * 109.68179 * 282.42276 * 29 24 23 51 51 H 1.09003 * 109.58465 * 66.18242 * 30 18 17 52 52 H 1.08999 * 109.58837 * 186.45967 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 -1.1963 5 6 2.1490 -0.0073 -2.3758 6 1 1.8917 1.0406 -2.4243 7 6 2.6111 -0.6616 -3.5094 8 7 2.7372 -0.0048 -4.6431 9 14 3.0554 -2.4741 -3.4258 10 1 1.8579 -3.2925 -3.7446 11 1 4.1304 -2.7661 -4.4078 12 1 3.5311 -2.8045 -2.0584 13 6 2.0400 -0.7214 1.2491 14 1 1.6783 -1.7497 1.2491 15 6 1.5303 -0.0005 2.4991 16 6 2.0128 -0.7403 3.7490 17 6 3.5444 -0.7374 3.7800 18 7 4.0439 -1.2974 2.5168 19 6 4.9189 -2.3225 2.5185 20 8 5.2461 -2.8445 1.4701 21 6 5.4791 -2.8113 3.7917 22 6 5.8947 -2.0186 4.8873 23 7 6.3270 -2.8183 5.8250 24 7 6.2199 -4.1370 5.3788 25 6 5.7021 -4.1230 4.1366 26 6 5.4313 -5.3538 3.3083 27 6 6.1903 -6.5304 3.9360 28 6 5.9174 -6.5568 5.4428 29 6 6.5947 -5.3537 6.1075 30 6 3.5719 -0.7183 1.2517 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2489 -1.6317 -1.1529 35 1 3.0605 -0.4619 -5.4351 36 1 0.4405 0.0201 2.4874 37 1 1.9126 1.0201 2.5111 38 1 1.6299 -0.2399 4.6385 39 1 1.6508 -1.7683 3.7258 40 1 3.9055 0.2846 3.8948 41 1 3.8942 -1.3445 4.6149 42 1 5.8585 -0.9405 4.9399 43 1 4.3622 -5.5663 3.3040 44 1 5.7792 -5.1942 2.2877 45 1 5.8505 -7.4640 3.4877 46 1 7.2595 -6.4090 3.7615 47 1 4.8425 -6.5112 5.6180 48 1 6.3156 -7.4782 5.8680 49 1 6.2644 -5.2754 7.1433 50 1 7.6769 -5.4806 6.0779 51 1 3.9354 0.3053 1.1603 52 1 3.9421 -1.3133 0.4168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482477269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:22 Heat of formation + Delta-G solvation = 44.689015 kcal Electronic energy + Delta-G solvation = -31743.359086 eV Core-core repulsion = 27744.168829 eV Total energy + Delta-G solvation = -3999.190257 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.95422 -39.79357 -37.66319 -36.92191 -35.48478 -33.03731 -32.70183 -31.74351 -30.79111 -30.27347 -29.12361 -28.12020 -25.46473 -24.72080 -24.06143 -22.96994 -22.50576 -22.12966 -20.81324 -19.80986 -19.56875 -18.66186 -17.65731 -17.18650 -16.28925 -15.95725 -15.60028 -15.12548 -14.94340 -14.80814 -14.69300 -14.42551 -14.30543 -14.13773 -14.00812 -13.72454 -13.29424 -12.95141 -12.89282 -12.88012 -12.68219 -12.37151 -12.30744 -12.08726 -11.75003 -11.54861 -11.50199 -11.43957 -11.12937 -11.01382 -10.96311 -10.90642 -10.73259 -10.56491 -10.24679 -10.03839 -9.84437 -9.65510 -9.51942 -9.46808 -8.85709 -8.75065 -8.37266 -7.17785 -5.68483 -3.03417 1.42588 2.04087 2.08732 3.07287 3.36620 3.48218 3.55811 3.57900 3.92484 4.12587 4.24323 4.25517 4.53571 4.69879 4.72662 4.76813 4.83779 4.89402 4.94302 4.96931 5.06182 5.15154 5.21989 5.24059 5.29865 5.34537 5.43341 5.50549 5.54899 5.59792 5.67552 5.68344 5.68970 5.77915 5.81990 5.92071 5.99194 6.11901 6.13057 6.18442 6.22640 6.39629 6.41925 6.51167 6.59940 6.62023 6.77362 6.89065 7.07239 7.36266 7.61542 8.07709 8.41160 8.50825 9.29827 10.03011 10.22585 11.49897 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.003213 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.015159 B = 8711.693140 C =10151.813009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.185 3.815 3 H 0.056 0.944 4 N -0.749 5.749 5 C -0.239 4.239 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.936 5.936 9 Si 0.877 3.123 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.270 1.270 13 C -0.106 4.106 14 H 0.068 0.932 15 C -0.114 4.114 16 C -0.133 4.133 17 C 0.103 3.897 18 N -0.606 5.606 19 C 0.592 3.408 20 O -0.538 6.538 21 C -0.283 4.283 22 C 0.080 3.920 23 N -0.298 5.298 24 N -0.361 5.361 25 C 0.149 3.851 26 C -0.068 4.068 27 C -0.127 4.127 28 C -0.138 4.138 29 C 0.131 3.869 30 C 0.122 3.878 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.361 0.639 35 H 0.258 0.742 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.190 0.810 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.094 0.906 49 H 0.095 0.905 50 H 0.086 0.914 51 H 0.068 0.932 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.099 -10.161 27.366 29.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.075 3.925 3 H 0.074 0.926 4 N -0.392 5.392 5 C -0.369 4.369 6 H 0.107 0.893 7 C -0.190 4.190 8 N -0.584 5.584 9 Si 0.708 3.292 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.196 1.196 13 C -0.126 4.126 14 H 0.087 0.913 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.020 4.020 18 N -0.338 5.338 19 C 0.380 3.620 20 O -0.415 6.415 21 C -0.298 4.298 22 C -0.107 4.107 23 N -0.117 5.117 24 N -0.142 5.142 25 C 0.018 3.982 26 C -0.107 4.107 27 C -0.165 4.165 28 C -0.177 4.177 29 C 0.010 3.990 30 C 0.001 3.999 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.194 0.806 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.207 0.793 43 H 0.111 0.889 44 H 0.128 0.872 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.112 0.888 49 H 0.113 0.887 50 H 0.105 0.895 51 H 0.086 0.914 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.855 -10.441 27.909 30.191 hybrid contribution -0.047 -1.076 -0.775 1.327 sum 4.808 -11.517 27.134 29.866 Atomic orbital electron populations 1.22448 0.98851 1.00785 1.00396 1.20148 0.91956 0.95561 0.84805 0.92639 1.42831 1.79645 1.09555 1.07134 1.19038 1.36800 0.95503 0.85558 0.89269 1.24633 1.01412 0.97388 0.95573 1.69701 1.52894 1.35553 1.00265 0.86631 0.78002 0.86962 0.77636 1.21322 1.21848 1.19603 1.21796 0.94866 1.00398 0.95525 0.91347 1.21618 1.01043 0.99149 0.93386 1.21909 0.95087 1.01371 0.98716 1.21890 0.94610 0.99032 0.86487 1.47985 1.43986 1.34184 1.07688 1.17288 0.78311 0.79127 0.87254 1.90801 1.60658 1.57172 1.32862 1.19833 1.18836 0.92292 0.98823 1.24113 0.96658 0.99982 0.89970 1.77087 1.24983 0.86334 1.23295 1.48506 1.48290 1.05826 1.11617 1.21300 0.94266 0.96063 0.86591 1.20635 1.01993 0.88651 0.99393 1.21717 1.01320 0.98984 0.94485 1.22002 1.02045 0.97184 0.96443 1.21895 1.00847 0.79751 0.96461 1.21689 0.93800 0.99036 0.85384 0.93956 0.92428 0.93757 0.80570 0.93178 0.91175 0.91646 0.91033 0.91816 0.91453 0.89636 0.79306 0.88944 0.87246 0.89779 0.90939 0.90437 0.88768 0.88683 0.89541 0.91367 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.14 37.16 0.34 -2.48 16 2 C 0.19 3.46 2.47 -67.93 -0.17 3.30 16 3 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 4 N -0.75 -17.76 4.33 -53.43 -0.23 -17.99 16 5 C -0.24 -6.77 10.41 -15.06 -0.16 -6.93 16 6 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 7 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 8 N -0.94 -29.98 13.97 55.49 0.78 -29.20 16 9 Si 0.88 23.13 27.74 -169.99 -4.71 18.42 16 10 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 11 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 12 H -0.27 -6.95 6.52 56.52 0.37 -6.58 16 13 C -0.11 -1.64 1.97 -90.50 -0.18 -1.82 16 14 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 15 C -0.11 -1.34 4.85 -26.69 -0.13 -1.47 16 16 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 17 C 0.10 1.08 5.48 -3.71 -0.02 1.06 16 18 N -0.61 -8.70 2.97 -174.04 -0.52 -9.21 16 19 C 0.59 9.54 7.47 -12.52 -0.09 9.44 16 20 O -0.54 -10.85 15.61 5.27 0.08 -10.77 16 21 C -0.28 -3.77 5.19 -105.21 -0.55 -4.32 16 22 C 0.08 0.91 9.64 -16.84 -0.16 0.75 16 23 N -0.30 -3.54 12.54 30.93 0.39 -3.15 16 24 N -0.36 -3.80 4.01 -56.39 -0.23 -4.02 16 25 C 0.15 1.76 6.65 -81.61 -0.54 1.22 16 26 C -0.07 -0.67 5.93 -27.60 -0.16 -0.84 16 27 C -0.13 -0.81 5.98 -26.42 -0.16 -0.97 16 28 C -0.14 -0.66 5.93 -26.53 -0.16 -0.82 16 29 C 0.13 0.84 7.27 -3.82 -0.03 0.81 16 30 C 0.12 2.05 5.48 -3.71 -0.02 2.03 16 31 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.36 8.73 5.49 -40.82 -0.22 8.51 16 35 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 36 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.82 4.80 -51.93 -0.25 0.57 16 42 H 0.19 1.65 7.37 -52.49 -0.39 1.27 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.11 1.31 7.48 -51.93 -0.39 0.92 16 45 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 47 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 48 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 52 H 0.10 2.11 6.52 -51.93 -0.34 1.77 16 LS Contribution 398.28 15.07 6.00 6.00 Total: -1.00 -36.03 398.28 -9.48 -45.51 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.60 Total: 6.89 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.44 Total: -2.46 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: 0.19 Total: -63.59 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.71 Total: 18.42 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.03 -9.48 -45.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482477269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.198 kcal (2) G-P(sol) polarization free energy of solvation -36.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds