Wall clock time and date at job start Wed Apr 1 2020 05:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47327 * 2 1 4 4 N 1.46502 * 109.46873 * 240.00578 * 2 1 3 5 5 C 1.36942 * 120.00083 * 84.99865 * 4 2 1 6 6 H 1.08002 * 119.99632 * 359.97438 * 5 4 2 7 7 C 1.38808 * 120.00105 * 180.02562 * 5 4 2 8 8 N 1.31625 * 120.00037 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00180 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46936 * 90.00040 * 9 7 5 11 11 H 1.48503 * 109.47094 * 210.00457 * 9 7 5 12 12 H 1.48500 * 109.46947 * 330.00039 * 9 7 5 13 13 C 1.52999 * 109.47417 * 120.00889 * 2 1 3 14 14 H 1.09004 * 109.52441 * 60.07620 * 13 2 1 15 15 C 1.53041 * 109.49315 * 299.99746 * 13 2 1 16 16 C 1.53042 * 109.53285 * 178.68433 * 15 13 2 17 17 C 1.53193 * 109.31680 * 61.36668 * 16 15 13 18 18 N 1.46927 * 108.77311 * 305.36470 * 17 16 15 19 19 C 1.34776 * 120.63143 * 233.58434 * 18 17 16 20 20 O 1.21604 * 120.00296 * 174.35271 * 19 18 17 21 21 C 1.47427 * 119.99648 * 354.36345 * 19 18 17 22 22 C 1.41472 * 126.48820 * 319.79038 * 21 19 18 23 23 N 1.30609 * 108.07209 * 179.81170 * 22 21 19 24 24 N 1.39628 * 108.87068 * 0.42437 * 23 22 21 25 25 C 1.34590 * 108.33925 * 359.75909 * 24 23 22 26 26 C 1.50811 * 124.57612 * 179.97438 * 25 24 23 27 27 C 1.53442 * 108.19708 * 344.32826 * 26 25 24 28 28 C 1.53160 * 109.12012 * 48.34630 * 27 26 25 29 29 C 1.46687 * 127.22689 * 179.79880 * 24 23 22 30 30 C 1.46924 * 118.74037 * 53.60373 * 18 17 16 31 31 H 1.09002 * 109.46979 * 299.99209 * 1 2 3 32 32 H 1.08997 * 109.47409 * 59.99260 * 1 2 3 33 33 H 1.09008 * 109.47276 * 179.97438 * 1 2 3 34 34 H 0.97001 * 120.00237 * 265.00175 * 4 2 1 35 35 H 0.96994 * 120.00069 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.46045 * 58.66718 * 15 13 2 37 37 H 1.08999 * 109.46428 * 298.70128 * 15 13 2 38 38 H 1.09002 * 109.49893 * 181.31921 * 16 15 13 39 39 H 1.09006 * 109.49952 * 301.37852 * 16 15 13 40 40 H 1.09000 * 109.58606 * 65.14881 * 17 16 15 41 41 H 1.08997 * 109.59000 * 185.43582 * 17 16 15 42 42 H 1.07997 * 125.96136 * 359.95528 * 22 21 19 43 43 H 1.09004 * 109.71626 * 104.00042 * 26 25 24 44 44 H 1.08998 * 109.71983 * 224.64989 * 26 25 24 45 45 H 1.08998 * 109.53105 * 168.23755 * 27 26 25 46 46 H 1.09005 * 109.53339 * 288.45687 * 27 26 25 47 47 H 1.09000 * 109.45986 * 50.78162 * 28 27 26 48 48 H 1.09003 * 109.46247 * 170.73874 * 28 27 26 49 49 H 1.09006 * 109.57588 * 42.74829 * 29 24 23 50 50 H 1.08996 * 109.68179 * 282.42276 * 29 24 23 51 51 H 1.09003 * 109.58465 * 66.18242 * 30 18 17 52 52 H 1.08999 * 109.58837 * 186.45967 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6905 -1.1963 5 6 2.1490 -0.0073 -2.3758 6 1 1.8917 1.0406 -2.4243 7 6 2.6111 -0.6616 -3.5094 8 7 2.7372 -0.0048 -4.6431 9 14 3.0554 -2.4741 -3.4258 10 1 1.8579 -3.2925 -3.7446 11 1 4.1304 -2.7661 -4.4078 12 1 3.5311 -2.8045 -2.0584 13 6 2.0400 -0.7214 1.2491 14 1 1.6783 -1.7497 1.2491 15 6 1.5303 -0.0005 2.4991 16 6 2.0128 -0.7403 3.7490 17 6 3.5444 -0.7374 3.7800 18 7 4.0439 -1.2974 2.5168 19 6 4.9189 -2.3225 2.5185 20 8 5.2461 -2.8445 1.4701 21 6 5.4791 -2.8113 3.7917 22 6 5.8947 -2.0186 4.8873 23 7 6.3270 -2.8183 5.8250 24 7 6.2199 -4.1370 5.3788 25 6 5.7021 -4.1230 4.1366 26 6 5.4313 -5.3538 3.3083 27 6 6.1903 -6.5304 3.9360 28 6 5.9174 -6.5568 5.4428 29 6 6.5947 -5.3537 6.1075 30 6 3.5719 -0.7183 1.2517 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2489 -1.6317 -1.1529 35 1 3.0605 -0.4619 -5.4351 36 1 0.4405 0.0201 2.4874 37 1 1.9126 1.0201 2.5111 38 1 1.6299 -0.2399 4.6385 39 1 1.6508 -1.7683 3.7258 40 1 3.9055 0.2846 3.8948 41 1 3.8942 -1.3445 4.6149 42 1 5.8585 -0.9405 4.9399 43 1 4.3622 -5.5663 3.3040 44 1 5.7792 -5.1942 2.2877 45 1 5.8505 -7.4640 3.4877 46 1 7.2595 -6.4090 3.7615 47 1 4.8425 -6.5112 5.6180 48 1 6.3156 -7.4782 5.8680 49 1 6.2644 -5.2754 7.1433 50 1 7.6769 -5.4806 6.0779 51 1 3.9354 0.3053 1.1603 52 1 3.9421 -1.3133 0.4168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482477269.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:20 Heat of formation + Delta-G solvation = 20.813389 kcal Electronic energy + Delta-G solvation = -31744.394411 eV Core-core repulsion = 27744.168829 eV Total energy + Delta-G solvation = -4000.225582 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.81020 -40.95176 -38.99602 -37.58074 -36.98583 -34.65870 -33.59775 -33.21521 -31.83216 -31.47400 -30.46754 -29.21274 -26.62978 -25.68700 -25.31612 -24.34924 -23.40295 -23.04898 -22.00939 -21.27763 -20.45281 -19.57205 -19.55042 -18.34992 -17.20337 -16.93961 -16.77442 -16.46927 -16.21273 -15.89174 -15.70209 -15.38276 -15.24669 -15.17445 -14.96700 -14.81644 -14.65793 -14.36587 -14.27521 -14.17926 -13.88441 -13.56686 -13.46082 -13.20071 -12.95756 -12.85554 -12.57159 -12.47550 -12.31774 -12.17216 -12.02656 -12.01409 -11.88686 -11.82348 -11.69135 -11.66511 -11.37220 -11.23406 -11.01110 -10.85017 -10.34716 -9.76606 -9.48698 -9.27593 -8.02198 -5.32264 0.51326 1.12981 1.33012 1.33269 1.38404 1.44847 1.95626 2.24364 2.46897 3.30573 3.31347 3.42517 3.53581 3.67929 3.72321 3.77347 3.83007 3.95948 4.00656 4.13906 4.16356 4.24382 4.28303 4.31024 4.36088 4.44834 4.59064 4.60420 4.60826 4.67164 4.75884 4.78174 4.83642 4.91915 4.93884 4.94642 4.96152 5.02837 5.03476 5.07234 5.18020 5.19885 5.27879 5.34548 5.38527 5.53272 5.57938 5.65116 5.80333 5.84581 6.23592 6.45502 6.53104 7.09593 7.21285 7.88295 8.04551 9.19785 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012553 B = 0.003213 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.015159 B = 8711.693140 C =10151.813009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.177 3.823 3 H 0.050 0.950 4 N -0.754 5.754 5 C -0.214 4.214 6 H 0.064 0.936 7 C -0.060 4.060 8 N -0.983 5.983 9 Si 0.941 3.059 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.267 1.267 13 C -0.092 4.092 14 H 0.057 0.943 15 C -0.108 4.108 16 C -0.125 4.125 17 C 0.098 3.902 18 N -0.601 5.601 19 C 0.587 3.413 20 O -0.593 6.593 21 C -0.309 4.309 22 C 0.086 3.914 23 N -0.312 5.312 24 N -0.356 5.356 25 C 0.146 3.854 26 C -0.070 4.070 27 C -0.123 4.123 28 C -0.129 4.129 29 C 0.118 3.882 30 C 0.126 3.874 31 H 0.083 0.917 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.359 0.641 35 H 0.256 0.744 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.107 0.893 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.213 0.787 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.127 0.873 49 H 0.112 0.888 50 H 0.098 0.902 51 H 0.068 0.932 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 -11.283 31.798 33.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 H 0.068 0.932 4 N -0.397 5.397 5 C -0.345 4.345 6 H 0.082 0.918 7 C -0.251 4.251 8 N -0.635 5.635 9 Si 0.770 3.230 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.193 1.193 13 C -0.112 4.112 14 H 0.076 0.924 15 C -0.146 4.146 16 C -0.163 4.163 17 C -0.024 4.024 18 N -0.332 5.332 19 C 0.377 3.623 20 O -0.474 6.474 21 C -0.324 4.324 22 C -0.101 4.101 23 N -0.131 5.131 24 N -0.136 5.136 25 C 0.013 3.987 26 C -0.109 4.109 27 C -0.160 4.160 28 C -0.167 4.167 29 C 0.000 4.000 30 C 0.004 3.996 31 H 0.101 0.899 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.192 0.808 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.229 0.771 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.119 0.881 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.145 0.855 49 H 0.130 0.870 50 H 0.117 0.883 51 H 0.087 0.913 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.234 -11.552 32.457 34.711 hybrid contribution 0.142 -0.658 -2.059 2.166 sum 4.376 -12.211 30.398 33.050 Atomic orbital electron populations 1.22305 0.96895 1.01092 1.01173 1.20454 0.93212 0.95161 0.84288 0.93233 1.42931 1.79842 1.09489 1.07396 1.19040 1.33975 0.94513 0.86986 0.91807 1.25297 1.02947 1.01370 0.95536 1.69848 1.55366 1.37233 1.01050 0.85604 0.77637 0.82410 0.77320 1.20321 1.22538 1.19257 1.21643 0.93723 0.99918 0.95935 0.92402 1.21615 1.01839 0.99337 0.91831 1.21895 0.94293 1.01115 0.99045 1.22219 0.95234 1.00223 0.84681 1.48038 1.43329 1.33619 1.08248 1.17757 0.78044 0.78896 0.87581 1.90764 1.62654 1.59071 1.34958 1.19729 1.20824 0.93557 0.98315 1.24408 0.95811 1.00972 0.88880 1.77047 1.25329 0.87075 1.23656 1.48874 1.47043 1.06465 1.11243 1.21560 0.93621 0.96212 0.87288 1.20665 1.02636 0.89657 0.97951 1.21723 1.00570 0.97937 0.95795 1.22012 1.02127 0.97762 0.94819 1.22353 1.01905 0.78666 0.97108 1.21421 0.94742 0.98052 0.85417 0.89855 0.94951 0.93661 0.80820 0.93537 0.89737 0.90493 0.87450 0.92584 0.89189 0.88383 0.77071 0.88641 0.90200 0.88121 0.91225 0.90406 0.85514 0.87001 0.88345 0.91336 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 9.14 71.98 0.66 -4.42 16 2 C 0.18 6.55 2.47 44.99 0.11 6.66 16 3 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 4 N -0.75 -36.47 4.33 -322.94 -1.40 -37.87 16 5 C -0.21 -12.49 10.41 84.03 0.87 -11.62 16 6 H 0.06 4.01 8.06 -2.91 -0.02 3.98 16 7 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 8 N -0.98 -65.27 13.97 21.65 0.30 -64.96 16 9 Si 0.94 49.73 27.74 68.60 1.90 51.63 16 10 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 11 H -0.30 -15.98 7.11 99.48 0.71 -15.27 16 12 H -0.27 -13.80 6.52 99.48 0.65 -13.15 16 13 C -0.09 -2.77 1.97 -10.72 -0.02 -2.79 16 14 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 15 C -0.11 -2.18 4.85 30.62 0.15 -2.03 16 16 C -0.13 -2.02 6.08 30.67 0.19 -1.83 16 17 C 0.10 1.77 5.48 86.36 0.47 2.24 16 18 N -0.60 -17.02 2.97 -822.78 -2.45 -19.47 16 19 C 0.59 19.41 7.47 86.66 0.65 20.06 16 20 O -0.59 -25.45 15.61 -4.04 -0.06 -25.51 16 21 C -0.31 -8.15 5.19 -20.25 -0.11 -8.25 16 22 C 0.09 1.82 9.64 85.67 0.83 2.65 16 23 N -0.31 -6.79 12.54 -56.07 -0.70 -7.49 16 24 N -0.36 -6.83 4.01 -332.32 -1.33 -8.16 16 25 C 0.15 3.37 6.65 41.99 0.28 3.65 16 26 C -0.07 -1.39 5.93 30.03 0.18 -1.21 16 27 C -0.12 -1.36 5.98 30.80 0.18 -1.17 16 28 C -0.13 -0.83 5.93 30.73 0.18 -0.65 16 29 C 0.12 1.17 7.27 86.42 0.63 1.80 16 30 C 0.13 4.30 5.48 86.36 0.47 4.78 16 31 H 0.08 2.05 6.40 -2.39 -0.02 2.03 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.36 17.71 5.49 -92.71 -0.51 17.20 16 35 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 36 H 0.08 1.51 6.36 -2.39 -0.02 1.49 16 37 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.59 4.80 -2.39 -0.01 1.58 16 42 H 0.21 3.18 7.37 -2.91 -0.02 3.16 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.08 2.06 7.48 -2.39 -0.02 2.05 16 45 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.07 0.82 8.12 -2.38 -0.02 0.80 16 47 H 0.08 0.55 8.12 -2.39 -0.02 0.53 16 48 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 49 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 50 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 52 H 0.05 2.36 6.52 -2.39 -0.02 2.34 16 Total: -1.00 -83.72 398.28 2.81 -80.91 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.35 Total: 26.31 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 6.19 Total: 4.61 kcal Atomic # 7 Polarization: -132.38 SS G_CDS: -5.58 Total: -137.95 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.06 Total: -25.51 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 1.90 Total: 51.63 kcal Total: -83.72 2.81 -80.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482477269.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.726 kcal (2) G-P(sol) polarization free energy of solvation -83.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds