Wall clock time and date at job start Wed Apr 1 2020 05:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47139 * 2 1 4 4 N 1.46495 * 109.47335 * 119.99995 * 2 1 3 5 5 C 1.36945 * 120.00053 * 274.99984 * 4 2 1 6 6 H 1.07996 * 119.99281 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00041 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99534 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99879 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47281 * 89.99864 * 9 7 5 11 11 H 1.48497 * 109.46956 * 209.99941 * 9 7 5 12 12 H 1.48499 * 109.46958 * 329.99716 * 9 7 5 13 13 C 1.53001 * 109.46985 * 240.00187 * 2 1 3 14 14 H 1.08999 * 109.52634 * 185.08268 * 13 2 1 15 15 C 1.53035 * 109.50126 * 64.99749 * 13 2 1 16 16 C 1.53041 * 109.54177 * 178.68343 * 15 13 2 17 17 C 1.53198 * 109.30955 * 61.36436 * 16 15 13 18 18 N 1.46917 * 108.77517 * 305.36730 * 17 16 15 19 19 C 1.34777 * 120.63026 * 233.58386 * 18 17 16 20 20 O 1.21602 * 120.00369 * 184.32318 * 19 18 17 21 21 C 1.47432 * 119.99952 * 4.32033 * 19 18 17 22 22 C 1.41467 * 126.48684 * 309.97590 * 21 19 18 23 23 N 1.30614 * 108.06903 * 179.97438 * 22 21 19 24 24 N 1.39622 * 108.87233 * 359.97438 * 23 22 21 25 25 C 1.34604 * 108.34131 * 0.03793 * 24 23 22 26 26 C 1.50809 * 124.57679 * 179.97438 * 25 24 23 27 27 C 1.53449 * 108.19365 * 344.30384 * 26 25 24 28 28 C 1.53167 * 109.11538 * 48.36593 * 27 26 25 29 29 C 1.46686 * 127.23126 * 180.02562 * 24 23 22 30 30 C 1.46928 * 118.74114 * 53.86069 * 18 17 16 31 31 H 1.09003 * 109.47920 * 59.99970 * 1 2 3 32 32 H 1.09005 * 109.47404 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46990 * 300.00092 * 1 2 3 34 34 H 0.97000 * 119.99914 * 94.99847 * 4 2 1 35 35 H 0.97003 * 119.99336 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.45898 * 58.66435 * 15 13 2 37 37 H 1.09003 * 109.46005 * 298.70700 * 15 13 2 38 38 H 1.08997 * 109.49845 * 301.41544 * 16 15 13 39 39 H 1.08996 * 109.52702 * 181.33254 * 16 15 13 40 40 H 1.09000 * 109.58521 * 185.57552 * 17 16 15 41 41 H 1.09000 * 109.70191 * 65.22776 * 17 16 15 42 42 H 1.07995 * 125.96765 * 359.97438 * 22 21 19 43 43 H 1.09003 * 109.71114 * 224.63183 * 26 25 24 44 44 H 1.08996 * 109.75357 * 104.00309 * 26 25 24 45 45 H 1.08997 * 109.53188 * 288.47121 * 27 26 25 46 46 H 1.08994 * 109.58886 * 168.29108 * 27 26 25 47 47 H 1.08997 * 109.46000 * 50.78411 * 28 27 26 48 48 H 1.09002 * 109.45710 * 170.74276 * 28 27 26 49 49 H 1.09001 * 109.56904 * 42.78250 * 29 24 23 50 50 H 1.09007 * 109.57257 * 282.40459 * 29 24 23 51 51 H 1.09002 * 109.58507 * 65.92890 * 30 18 17 52 52 H 1.08998 * 109.58590 * 186.34945 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0405 2.4240 7 6 2.6124 -0.6616 3.5090 8 7 2.9254 -1.9387 3.4498 9 14 2.7901 0.2701 5.1182 10 1 1.5225 0.1778 5.8863 11 1 3.8952 -0.3225 5.9138 12 1 3.0940 1.6955 4.8339 13 6 2.0399 -0.7212 -1.2493 14 1 3.1261 -0.8012 -1.2059 15 6 1.6353 0.0686 -2.4961 16 6 2.1731 -0.6346 -3.7444 17 6 1.5610 -2.0358 -3.8399 18 7 1.8218 -2.7523 -2.5841 19 6 2.4121 -3.9638 -2.5946 20 8 2.5515 -4.5814 -1.5563 21 6 2.8889 -4.5405 -3.8649 22 6 2.1513 -4.6534 -5.0668 23 7 2.9185 -5.2161 -5.9616 24 7 4.1618 -5.4849 -5.3858 25 6 4.1344 -5.0697 -4.1057 26 6 5.2900 -5.1850 -3.1436 27 6 6.3039 -6.1767 -3.7294 28 6 6.5713 -5.8148 -5.1934 29 6 5.3217 -6.1102 -6.0302 30 6 1.4212 -2.1257 -1.3169 31 1 -0.3635 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2490 -1.6317 1.1525 35 1 3.2488 -2.3959 4.2418 36 1 2.0504 1.0749 -2.4390 37 1 0.5483 0.1270 -2.5521 38 1 3.2581 -0.7154 -3.6775 39 1 1.9051 -0.0594 -4.6306 40 1 2.0145 -2.5768 -4.6703 41 1 0.4856 -1.9569 -3.9991 42 1 1.1319 -4.3307 -5.2180 43 1 4.9320 -5.5504 -2.1811 44 1 5.7609 -4.2104 -3.0150 45 1 5.9001 -7.1875 -3.6717 46 1 7.2349 -6.1236 -3.1650 47 1 6.8162 -4.7552 -5.2666 48 1 7.4065 -6.4070 -5.5672 49 1 5.4485 -5.6993 -7.0318 50 1 5.1683 -7.1876 -6.0922 51 1 0.3346 -2.0519 -1.2732 52 1 1.7825 -2.7263 -0.4821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482477270.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:29 Heat of formation + Delta-G solvation = 43.621692 kcal Electronic energy + Delta-G solvation = -31710.127058 eV Core-core repulsion = 27710.890519 eV Total energy + Delta-G solvation = -3999.236539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.86996 -39.74320 -37.60212 -36.82972 -35.30962 -32.97734 -32.60595 -31.78024 -30.70415 -29.89277 -28.75965 -27.63757 -25.40173 -24.65173 -24.38574 -23.15052 -22.64253 -22.09817 -20.94076 -19.82991 -18.82947 -18.45970 -17.46499 -16.95450 -16.22782 -15.86847 -15.56808 -14.99972 -14.80347 -14.76877 -14.58544 -14.41291 -14.31429 -14.02262 -13.90269 -13.67368 -13.50324 -12.97547 -12.77466 -12.71992 -12.53833 -12.37882 -12.23449 -11.81768 -11.64169 -11.47320 -11.43557 -11.34946 -11.01491 -10.92948 -10.88672 -10.80849 -10.54472 -10.36480 -10.18337 -10.15172 -9.82532 -9.59512 -9.49505 -9.41406 -8.83397 -8.64734 -8.26705 -6.87030 -5.66630 -2.95905 1.53316 2.12397 2.20002 3.07452 3.41749 3.48604 3.53294 3.55291 4.00713 4.21084 4.32672 4.34084 4.61930 4.65084 4.80468 4.86403 4.92241 4.98254 5.01743 5.04256 5.17589 5.23426 5.32015 5.33414 5.39100 5.45350 5.51998 5.59647 5.64506 5.68220 5.75631 5.77736 5.83244 5.89784 5.93981 5.96776 6.05169 6.16874 6.21737 6.28357 6.32698 6.45401 6.50980 6.67131 6.68515 6.74515 6.87980 6.97702 7.20180 7.44056 7.68846 7.77795 8.49370 8.51250 9.62018 10.20940 10.55181 11.55490 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013170 B = 0.002912 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.535590 B = 9613.240449 C =11017.769534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.180 3.820 3 H 0.048 0.952 4 N -0.725 5.725 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.103 4.103 14 H 0.073 0.927 15 C -0.114 4.114 16 C -0.132 4.132 17 C 0.104 3.896 18 N -0.604 5.604 19 C 0.592 3.408 20 O -0.532 6.532 21 C -0.280 4.280 22 C 0.077 3.923 23 N -0.298 5.298 24 N -0.362 5.362 25 C 0.146 3.854 26 C -0.069 4.069 27 C -0.127 4.127 28 C -0.138 4.138 29 C 0.132 3.868 30 C 0.118 3.882 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.385 0.615 35 H 0.254 0.746 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.189 0.811 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.070 0.930 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.916 -5.451 -24.013 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.367 5.367 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.123 4.123 14 H 0.091 0.909 15 C -0.152 4.152 16 C -0.171 4.171 17 C -0.020 4.020 18 N -0.337 5.337 19 C 0.379 3.621 20 O -0.409 6.409 21 C -0.294 4.294 22 C -0.110 4.110 23 N -0.118 5.118 24 N -0.143 5.143 25 C 0.015 3.985 26 C -0.108 4.108 27 C -0.164 4.164 28 C -0.177 4.177 29 C 0.011 3.989 30 C -0.004 4.004 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.206 0.794 43 H 0.127 0.873 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.112 0.888 49 H 0.113 0.887 50 H 0.104 0.896 51 H 0.088 0.912 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.210 -6.163 -24.618 25.724 hybrid contribution -0.061 0.535 1.610 1.698 sum 4.149 -5.628 -23.008 24.047 Atomic orbital electron populations 1.22579 0.99570 1.00929 0.99886 1.20170 0.91791 0.95222 0.85824 0.93421 1.42501 1.78095 1.10835 1.05289 1.19215 1.36489 0.93795 0.87417 0.91312 1.24741 1.02329 0.95960 0.97953 1.69680 1.50775 1.08563 1.28714 0.86238 0.77238 0.78746 0.84251 1.21839 1.21879 1.20886 1.21852 1.00881 0.94356 0.95182 0.90857 1.21606 1.01031 0.98840 0.93686 1.21898 1.00989 0.95539 0.98643 1.21861 1.00252 0.93135 0.86737 1.48010 1.60064 1.17707 1.07895 1.17312 0.77109 0.80559 0.87144 1.90823 1.56485 1.60019 1.33555 1.19814 0.95743 1.17062 0.96802 1.24038 0.99805 0.97402 0.89720 1.77061 0.90548 1.21943 1.22198 1.48482 1.11008 1.46776 1.08019 1.21268 0.96200 0.94627 0.86390 1.20631 0.91291 1.01388 0.97446 1.21705 1.00051 0.99572 0.95112 1.22006 0.96337 1.03598 0.95736 1.21897 0.81433 0.98220 0.97339 1.21931 0.99212 0.93724 0.85507 0.94332 0.93164 0.92958 0.78051 0.93564 0.91782 0.91532 0.91772 0.91205 0.89637 0.91542 0.79415 0.87346 0.88817 0.90977 0.89735 0.90403 0.88812 0.88748 0.89607 0.91169 0.88225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.01 8.76 37.15 0.33 -2.69 16 2 C 0.18 3.55 2.67 -67.94 -0.18 3.36 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 N -0.73 -18.37 5.06 -53.43 -0.27 -18.64 16 5 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 9 Si 0.90 22.79 29.55 -169.99 -5.02 17.76 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 C -0.10 -1.70 2.28 -90.28 -0.21 -1.90 16 14 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.11 -1.43 4.89 -26.69 -0.13 -1.56 16 16 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16 17 C 0.10 1.14 5.91 -3.71 -0.02 1.12 16 18 N -0.60 -8.96 2.97 -173.77 -0.52 -9.47 16 19 C 0.59 9.83 7.39 -12.52 -0.09 9.74 16 20 O -0.53 -11.11 16.22 5.28 0.09 -11.02 16 21 C -0.28 -3.87 5.11 -105.21 -0.54 -4.41 16 22 C 0.08 0.91 9.66 -16.84 -0.16 0.75 16 23 N -0.30 -3.67 12.54 30.93 0.39 -3.28 16 24 N -0.36 -3.99 4.01 -56.38 -0.23 -4.22 16 25 C 0.15 1.81 6.66 -81.61 -0.54 1.27 16 26 C -0.07 -0.74 6.11 -27.60 -0.17 -0.91 16 27 C -0.13 -0.90 5.98 -26.41 -0.16 -1.06 16 28 C -0.14 -0.75 5.93 -26.51 -0.16 -0.91 16 29 C 0.13 0.91 7.27 -3.81 -0.03 0.88 16 30 C 0.12 2.01 5.17 -3.49 -0.02 1.99 16 31 H 0.04 0.56 6.60 -51.93 -0.34 0.22 16 32 H 0.05 0.90 6.23 -51.93 -0.32 0.58 16 33 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.38 10.54 6.49 -40.82 -0.26 10.28 16 35 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.79 6.63 -51.93 -0.34 0.45 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.87 4.56 -51.93 -0.24 0.63 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.19 1.69 7.64 -52.49 -0.40 1.29 16 43 H 0.11 1.38 7.83 -51.93 -0.41 0.98 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.45 8.12 -51.93 -0.42 0.03 16 48 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 51 H 0.07 1.14 6.08 -51.93 -0.32 0.83 16 52 H 0.10 2.11 5.86 -51.93 -0.30 1.80 16 LS Contribution 397.97 15.07 6.00 6.00 Total: -1.00 -35.14 397.97 -9.73 -44.87 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.40 Total: 9.31 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.49 Total: -3.23 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: 0.10 Total: -63.69 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.14 -9.73 -44.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482477270.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.493 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds