Wall clock time and date at job start Wed Apr 1 2020 05:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47139 * 2 1 4 4 N 1.46495 * 109.47335 * 119.99995 * 2 1 3 5 5 C 1.36945 * 120.00053 * 274.99984 * 4 2 1 6 6 H 1.07996 * 119.99281 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00041 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99534 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99879 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47281 * 89.99864 * 9 7 5 11 11 H 1.48497 * 109.46956 * 209.99941 * 9 7 5 12 12 H 1.48499 * 109.46958 * 329.99716 * 9 7 5 13 13 C 1.53001 * 109.46985 * 240.00187 * 2 1 3 14 14 H 1.08999 * 109.52634 * 185.08268 * 13 2 1 15 15 C 1.53035 * 109.50126 * 64.99749 * 13 2 1 16 16 C 1.53041 * 109.54177 * 178.68343 * 15 13 2 17 17 C 1.53198 * 109.30955 * 61.36436 * 16 15 13 18 18 N 1.46917 * 108.77517 * 305.36730 * 17 16 15 19 19 C 1.34777 * 120.63026 * 233.58386 * 18 17 16 20 20 O 1.21602 * 120.00369 * 184.32318 * 19 18 17 21 21 C 1.47432 * 119.99952 * 4.32033 * 19 18 17 22 22 C 1.41467 * 126.48684 * 309.97590 * 21 19 18 23 23 N 1.30614 * 108.06903 * 179.97438 * 22 21 19 24 24 N 1.39622 * 108.87233 * 359.97438 * 23 22 21 25 25 C 1.34604 * 108.34131 * 0.03793 * 24 23 22 26 26 C 1.50809 * 124.57679 * 179.97438 * 25 24 23 27 27 C 1.53449 * 108.19365 * 344.30384 * 26 25 24 28 28 C 1.53167 * 109.11538 * 48.36593 * 27 26 25 29 29 C 1.46686 * 127.23126 * 180.02562 * 24 23 22 30 30 C 1.46928 * 118.74114 * 53.86069 * 18 17 16 31 31 H 1.09003 * 109.47920 * 59.99970 * 1 2 3 32 32 H 1.09005 * 109.47404 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46990 * 300.00092 * 1 2 3 34 34 H 0.97000 * 119.99914 * 94.99847 * 4 2 1 35 35 H 0.97003 * 119.99336 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.45898 * 58.66435 * 15 13 2 37 37 H 1.09003 * 109.46005 * 298.70700 * 15 13 2 38 38 H 1.08997 * 109.49845 * 301.41544 * 16 15 13 39 39 H 1.08996 * 109.52702 * 181.33254 * 16 15 13 40 40 H 1.09000 * 109.58521 * 185.57552 * 17 16 15 41 41 H 1.09000 * 109.70191 * 65.22776 * 17 16 15 42 42 H 1.07995 * 125.96765 * 359.97438 * 22 21 19 43 43 H 1.09003 * 109.71114 * 224.63183 * 26 25 24 44 44 H 1.08996 * 109.75357 * 104.00309 * 26 25 24 45 45 H 1.08997 * 109.53188 * 288.47121 * 27 26 25 46 46 H 1.08994 * 109.58886 * 168.29108 * 27 26 25 47 47 H 1.08997 * 109.46000 * 50.78411 * 28 27 26 48 48 H 1.09002 * 109.45710 * 170.74276 * 28 27 26 49 49 H 1.09001 * 109.56904 * 42.78250 * 29 24 23 50 50 H 1.09007 * 109.57257 * 282.40459 * 29 24 23 51 51 H 1.09002 * 109.58507 * 65.92890 * 30 18 17 52 52 H 1.08998 * 109.58590 * 186.34945 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0405 2.4240 7 6 2.6124 -0.6616 3.5090 8 7 2.9254 -1.9387 3.4498 9 14 2.7901 0.2701 5.1182 10 1 1.5225 0.1778 5.8863 11 1 3.8952 -0.3225 5.9138 12 1 3.0940 1.6955 4.8339 13 6 2.0399 -0.7212 -1.2493 14 1 3.1261 -0.8012 -1.2059 15 6 1.6353 0.0686 -2.4961 16 6 2.1731 -0.6346 -3.7444 17 6 1.5610 -2.0358 -3.8399 18 7 1.8218 -2.7523 -2.5841 19 6 2.4121 -3.9638 -2.5946 20 8 2.5515 -4.5814 -1.5563 21 6 2.8889 -4.5405 -3.8649 22 6 2.1513 -4.6534 -5.0668 23 7 2.9185 -5.2161 -5.9616 24 7 4.1618 -5.4849 -5.3858 25 6 4.1344 -5.0697 -4.1057 26 6 5.2900 -5.1850 -3.1436 27 6 6.3039 -6.1767 -3.7294 28 6 6.5713 -5.8148 -5.1934 29 6 5.3217 -6.1102 -6.0302 30 6 1.4212 -2.1257 -1.3169 31 1 -0.3635 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.2490 -1.6317 1.1525 35 1 3.2488 -2.3959 4.2418 36 1 2.0504 1.0749 -2.4390 37 1 0.5483 0.1270 -2.5521 38 1 3.2581 -0.7154 -3.6775 39 1 1.9051 -0.0594 -4.6306 40 1 2.0145 -2.5768 -4.6703 41 1 0.4856 -1.9569 -3.9991 42 1 1.1319 -4.3307 -5.2180 43 1 4.9320 -5.5504 -2.1811 44 1 5.7609 -4.2104 -3.0150 45 1 5.9001 -7.1875 -3.6717 46 1 7.2349 -6.1236 -3.1650 47 1 6.8162 -4.7552 -5.2666 48 1 7.4065 -6.4070 -5.5672 49 1 5.4485 -5.6993 -7.0318 50 1 5.1683 -7.1876 -6.0922 51 1 0.3346 -2.0519 -1.2732 52 1 1.7825 -2.7263 -0.4821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482477270.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:27 Heat of formation + Delta-G solvation = 20.517607 kcal Electronic energy + Delta-G solvation = -31711.128926 eV Core-core repulsion = 27710.890519 eV Total energy + Delta-G solvation = -4000.238408 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.78598 -40.97241 -38.99685 -37.55233 -36.85314 -34.63540 -33.56108 -33.14265 -31.57974 -31.39873 -29.96895 -29.01884 -26.56105 -26.20631 -25.31825 -24.64929 -23.55685 -23.04514 -22.14414 -20.87014 -20.01756 -19.53329 -19.21247 -18.34124 -17.24429 -16.93261 -16.70937 -16.54268 -15.98219 -15.78877 -15.61172 -15.45285 -15.38529 -15.22981 -15.06887 -14.93460 -14.72533 -14.27601 -14.08752 -13.91908 -13.85346 -13.47871 -13.31482 -13.01083 -12.90313 -12.82590 -12.64423 -12.42468 -12.28428 -12.07989 -12.02340 -11.98172 -11.87114 -11.77000 -11.71721 -11.67431 -11.35610 -11.16858 -10.92279 -10.85341 -10.32494 -9.70761 -9.45258 -8.98266 -7.90085 -5.19347 0.56544 1.19275 1.34709 1.45749 1.48395 1.56558 1.87642 2.25254 2.57645 3.33400 3.42421 3.43786 3.67834 3.70020 3.74807 3.83583 3.91490 3.96173 4.04996 4.14386 4.21933 4.26186 4.29110 4.35868 4.37600 4.43054 4.59871 4.63263 4.63600 4.66062 4.75481 4.76813 4.86136 4.92769 4.93603 4.93909 4.95945 5.03864 5.12714 5.14425 5.17148 5.20616 5.27407 5.37710 5.40267 5.48083 5.55819 5.62034 5.72292 5.86361 6.31013 6.47405 6.54560 7.22992 7.35872 8.14872 8.36243 9.33368 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013170 B = 0.002912 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.535590 B = 9613.240449 C =11017.769534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 H 0.047 0.953 4 N -0.741 5.741 5 C -0.234 4.234 6 H 0.078 0.922 7 C -0.082 4.082 8 N -0.972 5.972 9 Si 0.972 3.028 10 H -0.288 1.288 11 H -0.299 1.299 12 H -0.267 1.267 13 C -0.090 4.090 14 H 0.043 0.957 15 C -0.107 4.107 16 C -0.126 4.126 17 C 0.098 3.902 18 N -0.600 5.600 19 C 0.587 3.413 20 O -0.592 6.592 21 C -0.305 4.305 22 C 0.085 3.915 23 N -0.309 5.309 24 N -0.356 5.356 25 C 0.141 3.859 26 C -0.072 4.072 27 C -0.122 4.122 28 C -0.129 4.129 29 C 0.120 3.880 30 C 0.126 3.874 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.215 0.785 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.076 0.924 48 H 0.128 0.872 49 H 0.113 0.887 50 H 0.099 0.901 51 H 0.081 0.919 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.658 -3.973 -27.460 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.064 3.936 3 H 0.065 0.935 4 N -0.382 5.382 5 C -0.366 4.366 6 H 0.096 0.904 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.802 3.198 10 H -0.216 1.216 11 H -0.225 1.225 12 H -0.192 1.192 13 C -0.110 4.110 14 H 0.061 0.939 15 C -0.145 4.145 16 C -0.164 4.164 17 C -0.023 4.023 18 N -0.331 5.331 19 C 0.376 3.624 20 O -0.473 6.473 21 C -0.320 4.320 22 C -0.102 4.102 23 N -0.129 5.129 24 N -0.136 5.136 25 C 0.008 3.992 26 C -0.111 4.111 27 C -0.159 4.159 28 C -0.167 4.167 29 C 0.001 3.999 30 C 0.004 3.996 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.232 0.768 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.089 0.911 46 H 0.117 0.883 47 H 0.095 0.905 48 H 0.146 0.854 49 H 0.131 0.869 50 H 0.117 0.883 51 H 0.099 0.901 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.928 -4.617 -28.160 28.806 hybrid contribution 0.025 0.083 2.597 2.599 sum 3.954 -4.534 -25.563 26.261 Atomic orbital electron populations 1.22408 0.97381 1.00873 1.01091 1.20466 0.93187 0.94839 0.85064 0.93487 1.42781 1.78472 1.10335 1.06566 1.19651 1.34459 0.94176 0.88357 0.90432 1.25598 1.03303 0.96859 1.01622 1.69877 1.52867 1.10416 1.29197 0.85147 0.76757 0.78082 0.79844 1.21561 1.22541 1.19153 1.21668 0.98816 0.94406 0.96093 0.93854 1.21591 1.02307 0.98601 0.91959 1.21887 1.00036 0.95402 0.99078 1.22208 1.02194 0.92987 0.84912 1.48084 1.59133 1.17328 1.08546 1.17804 0.76425 0.80712 0.87456 1.90788 1.58847 1.61765 1.35859 1.19708 0.97110 1.18923 0.96281 1.24373 1.00680 0.96758 0.88386 1.77022 0.91138 1.22196 1.22530 1.48848 1.11530 1.45820 1.07437 1.21466 0.96245 0.94112 0.87339 1.20640 0.91967 1.02336 0.96119 1.21710 0.99369 0.98230 0.96633 1.22014 0.96649 1.04149 0.93907 1.22355 0.80479 0.98911 0.98172 1.21633 0.99469 0.93269 0.85260 0.89994 0.93842 0.94778 0.79872 0.94323 0.90795 0.89590 0.93185 0.87367 0.88359 0.88742 0.76838 0.90552 0.88994 0.91060 0.88298 0.90542 0.85427 0.86924 0.88255 0.90050 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.43 8.76 71.98 0.63 -4.80 16 2 C 0.17 6.84 2.67 44.99 0.12 6.96 16 3 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 4 N -0.74 -39.16 5.06 -322.95 -1.63 -40.80 16 5 C -0.23 -13.47 9.93 84.03 0.83 -12.64 16 6 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 7 C -0.08 -4.93 5.50 84.86 0.47 -4.46 16 8 N -0.97 -63.26 13.06 21.65 0.28 -62.98 16 9 Si 0.97 48.00 29.55 68.60 2.03 50.03 16 10 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 11 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 C -0.09 -3.00 2.28 -10.57 -0.02 -3.02 16 14 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 15 C -0.11 -2.39 4.89 30.62 0.15 -2.24 16 16 C -0.13 -2.31 6.08 30.67 0.19 -2.12 16 17 C 0.10 1.92 5.91 86.37 0.51 2.43 16 18 N -0.60 -18.05 2.97 -821.94 -2.44 -20.48 16 19 C 0.59 20.66 7.39 86.67 0.64 21.30 16 20 O -0.59 -27.16 16.22 -4.04 -0.07 -27.23 16 21 C -0.31 -8.59 5.11 -20.25 -0.10 -8.69 16 22 C 0.08 1.88 9.66 85.67 0.83 2.71 16 23 N -0.31 -7.05 12.54 -56.07 -0.70 -7.76 16 24 N -0.36 -7.37 4.01 -332.28 -1.33 -8.70 16 25 C 0.14 3.55 6.66 41.98 0.28 3.83 16 26 C -0.07 -1.63 6.11 30.03 0.18 -1.45 16 27 C -0.12 -1.65 5.98 30.80 0.18 -1.46 16 28 C -0.13 -1.08 5.93 30.74 0.18 -0.90 16 29 C 0.12 1.36 7.27 86.43 0.63 1.98 16 30 C 0.13 4.48 5.17 86.51 0.45 4.93 16 31 H 0.08 2.10 6.60 -2.39 -0.02 2.08 16 32 H 0.04 1.54 6.23 -2.38 -0.01 1.53 16 33 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.37 21.70 6.49 -92.71 -0.60 21.10 16 35 H 0.25 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.09 1.64 6.63 -2.39 -0.02 1.62 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 1.73 4.56 -2.39 -0.01 1.72 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.22 3.30 7.64 -2.91 -0.02 3.28 16 43 H 0.08 2.22 7.83 -2.39 -0.02 2.20 16 44 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 46 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.08 0.71 8.12 -2.39 -0.02 0.69 16 48 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 51 H 0.08 2.67 6.08 -2.39 -0.01 2.65 16 52 H 0.05 2.20 5.86 -2.39 -0.01 2.19 16 Total: -1.00 -82.97 397.97 2.61 -80.36 By element: Atomic # 1 Polarization: 34.88 SS G_CDS: 0.33 Total: 35.20 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 6.14 Total: 2.35 kcal Atomic # 7 Polarization: -134.90 SS G_CDS: -5.82 Total: -140.72 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.07 Total: -27.23 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -82.97 2.61 -80.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482477270.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.879 kcal (2) G-P(sol) polarization free energy of solvation -82.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds