Wall clock time and date at job start Wed Apr 1 2020 05:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47392 * 2 1 4 4 N 1.46498 * 109.47085 * 239.99329 * 2 1 3 5 5 C 1.36942 * 119.99801 * 85.00611 * 4 2 1 6 6 H 1.08000 * 119.99665 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99928 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00050 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99988 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47222 * 89.99850 * 9 7 5 11 11 H 1.48497 * 109.47270 * 209.99975 * 9 7 5 12 12 H 1.48504 * 109.47311 * 330.00183 * 9 7 5 13 13 C 1.53000 * 109.46638 * 119.99703 * 2 1 3 14 14 H 1.09004 * 109.49973 * 59.93826 * 13 2 1 15 15 C 1.53037 * 109.49918 * 299.83799 * 13 2 1 16 16 C 1.53042 * 109.53766 * 178.68843 * 15 13 2 17 17 C 1.53189 * 109.31614 * 61.36233 * 16 15 13 18 18 N 1.46931 * 108.77401 * 305.36350 * 17 16 15 19 19 C 1.34770 * 120.62944 * 233.62931 * 18 17 16 20 20 O 1.21517 * 119.99714 * 174.07362 * 19 18 17 21 21 C 1.48169 * 120.00227 * 354.07428 * 19 18 17 22 22 C 1.40014 * 120.88081 * 319.14740 * 21 19 18 23 23 C 1.37941 * 119.17296 * 179.97438 * 22 21 19 24 24 N 1.31924 * 121.00704 * 0.02562 * 23 22 21 25 25 C 1.32323 * 121.94025 * 359.97438 * 24 23 22 26 26 N 1.39022 * 119.64322 * 180.02562 * 25 24 23 27 27 C 1.46496 * 120.00220 * 184.99758 * 26 25 24 28 28 C 1.46499 * 119.99954 * 5.00261 * 26 25 24 29 29 C 1.39119 * 120.71026 * 359.74103 * 25 24 23 30 30 C 1.46920 * 118.73440 * 53.61265 * 18 17 16 31 31 H 1.09000 * 109.46320 * 59.99955 * 1 2 3 32 32 H 1.08997 * 109.46709 * 300.00794 * 1 2 3 33 33 H 1.08993 * 109.47392 * 179.97438 * 1 2 3 34 34 H 0.96999 * 120.00376 * 265.00826 * 4 2 1 35 35 H 0.97002 * 119.99841 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.45820 * 298.70046 * 15 13 2 37 37 H 1.08991 * 109.46191 * 58.66530 * 15 13 2 38 38 H 1.09004 * 109.49770 * 301.40635 * 16 15 13 39 39 H 1.08998 * 109.52410 * 181.33457 * 16 15 13 40 40 H 1.09009 * 109.58537 * 185.57910 * 17 16 15 41 41 H 1.08992 * 109.70486 * 65.22322 * 17 16 15 42 42 H 1.07998 * 120.41122 * 0.02562 * 22 21 19 43 43 H 1.08008 * 119.49965 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.46769 * 89.99832 * 27 26 25 45 45 H 1.08994 * 109.47195 * 210.00602 * 27 26 25 46 46 H 1.09007 * 109.46709 * 330.00457 * 27 26 25 47 47 H 1.09000 * 109.47095 * 359.97438 * 28 26 25 48 48 H 1.09000 * 109.47404 * 119.99879 * 28 26 25 49 49 H 1.09000 * 109.47017 * 240.00244 * 28 26 25 50 50 H 1.08003 * 120.53784 * 180.26579 * 29 25 24 51 51 H 1.09000 * 109.58427 * 186.60269 * 30 18 17 52 52 H 1.08997 * 109.59326 * 66.17916 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1493 -0.0077 -2.3757 6 1 1.8921 1.0402 -2.4243 7 6 2.6124 -0.6620 -3.5089 8 7 2.9263 -1.9388 -3.4495 9 14 2.7903 0.2696 -5.1182 10 1 4.1521 0.8556 -5.2031 11 1 2.5806 -0.6621 -6.2553 12 1 1.7796 1.3561 -5.1756 13 6 2.0399 -0.7212 1.2493 14 1 1.6759 -1.7487 1.2504 15 6 1.5334 0.0022 2.4992 16 6 2.0158 -0.7373 3.7493 17 6 3.5474 -0.7379 3.7783 18 7 4.0441 -1.3006 2.5151 19 6 4.9159 -2.3283 2.5170 20 8 5.2363 -2.8551 1.4699 21 6 5.4836 -2.8159 3.7958 22 6 5.8781 -1.9185 4.7955 23 6 6.4019 -2.4110 5.9727 24 7 6.5352 -3.7091 6.1666 25 6 6.1762 -4.5942 5.2508 26 7 6.3375 -5.9513 5.5057 27 6 6.0461 -6.9331 4.4582 28 6 6.7987 -6.3996 6.8219 29 6 5.6338 -4.1815 4.0380 30 6 3.5719 -0.7217 1.2500 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3632 0.5140 0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6319 -1.1525 35 1 3.2496 -2.3961 -4.2415 36 1 1.9182 1.0220 2.5095 37 1 0.4438 0.0254 2.4888 38 1 1.6519 -1.7646 3.7275 39 1 1.6352 -0.2355 4.6389 40 1 3.8968 -1.3470 4.6121 41 1 3.9132 0.2824 3.8927 42 1 5.7728 -0.8539 4.6471 43 1 6.7075 -1.7235 6.7476 44 1 6.9479 -7.1214 3.8758 45 1 5.7080 -7.8629 4.9155 46 1 5.2653 -6.5452 3.8038 47 1 6.9627 -5.5340 7.4637 48 1 6.0448 -7.0470 7.2700 49 1 7.7322 -6.9514 6.7113 50 1 5.3379 -4.9065 3.2942 51 1 3.9375 -1.3200 0.4155 52 1 3.9376 0.3009 1.1570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482478870.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:58 Heat of formation + Delta-G solvation = 33.417745 kcal Electronic energy + Delta-G solvation = -31084.418044 eV Core-core repulsion = 27084.739028 eV Total energy + Delta-G solvation = -3999.679016 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.94119 -39.66697 -37.74511 -36.71877 -35.44390 -33.22409 -32.51895 -31.74990 -30.75805 -29.75277 -28.60471 -28.13686 -26.00227 -25.29175 -24.48786 -23.39941 -22.77632 -22.21679 -20.94751 -19.59936 -19.28268 -17.76097 -17.07241 -16.97853 -16.32216 -15.85930 -15.71521 -15.55527 -15.09308 -14.86076 -14.48656 -14.37196 -14.33249 -13.86213 -13.65407 -13.61511 -13.37672 -13.08328 -12.84060 -12.81733 -12.71533 -12.42930 -12.36004 -12.31884 -12.00823 -11.86284 -11.31162 -11.11451 -10.98858 -10.82328 -10.70082 -10.61341 -10.25498 -10.24767 -10.14514 -10.07373 -9.87496 -9.78414 -9.53466 -9.39919 -8.86210 -8.45160 -7.80133 -6.89070 -5.68592 -2.97952 0.79864 1.10101 2.58852 2.86245 3.06422 3.47767 3.52416 3.54457 3.70975 4.23236 4.34990 4.62468 4.71295 4.76739 4.86017 4.91061 4.95862 5.01676 5.02117 5.07906 5.13474 5.25246 5.31110 5.38197 5.40471 5.48024 5.53125 5.56251 5.62508 5.63124 5.71866 5.81816 5.83083 5.94536 6.00835 6.04682 6.14532 6.22060 6.22800 6.25880 6.45316 6.50351 6.54184 6.61875 6.73812 6.76295 6.94543 7.06287 7.13072 7.50382 7.76022 7.86853 8.24141 8.48932 9.60040 10.17999 10.52337 11.53569 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.002617 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.444903 B =10695.561756 C =11870.570593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.102 4.102 14 H 0.070 0.930 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.097 3.903 18 N -0.601 5.601 19 C 0.552 3.448 20 O -0.516 6.516 21 C -0.030 4.030 22 C -0.210 4.210 23 C 0.146 3.854 24 N -0.536 5.536 25 C 0.401 3.599 26 N -0.617 5.617 27 C 0.091 3.909 28 C 0.095 3.905 29 C -0.189 4.189 30 C 0.122 3.878 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.140 0.860 43 H 0.160 0.840 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.051 0.949 49 H 0.051 0.949 50 H 0.142 0.858 51 H 0.108 0.892 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.798 -3.405 25.337 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.209 1.209 13 C -0.123 4.123 14 H 0.088 0.912 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.026 4.026 18 N -0.334 5.334 19 C 0.338 3.662 20 O -0.392 6.392 21 C -0.041 4.041 22 C -0.234 4.234 23 C -0.011 4.011 24 N -0.254 5.254 25 C 0.167 3.833 26 N -0.331 5.331 27 C -0.052 4.052 28 C -0.048 4.048 29 C -0.214 4.214 30 C 0.001 3.999 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.157 0.843 43 H 0.178 0.822 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.109 0.891 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.159 0.841 51 H 0.126 0.874 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.353 -4.072 25.401 26.091 hybrid contribution -0.227 0.450 -1.733 1.805 sum 4.125 -3.622 23.668 24.297 Atomic orbital electron populations 1.22480 0.99329 1.00786 0.99864 1.20171 0.91826 0.95239 0.85788 0.93516 1.42458 1.78074 1.10755 1.05285 1.19188 1.36659 0.93763 0.87354 0.91303 1.24734 1.02235 0.95928 0.97971 1.69670 1.50625 1.08595 1.28797 0.86245 0.77722 0.78574 0.83958 1.21795 1.21885 1.20883 1.21759 0.94611 1.00526 0.95367 0.91197 1.21633 1.01080 0.99038 0.93540 1.21925 0.94906 1.01547 0.98813 1.22078 0.94848 0.99270 0.86407 1.48076 1.43771 1.33338 1.08207 1.18309 0.79628 0.79945 0.88292 1.90873 1.59714 1.56111 1.32479 1.20120 0.96551 0.93634 0.93834 1.22059 1.05726 1.00770 0.94801 1.22328 0.92897 0.90243 0.95629 1.66969 1.22437 1.03061 1.32929 1.18167 0.90496 0.85454 0.89178 1.46181 1.71515 1.01473 1.13973 1.21762 1.01334 0.91481 0.90625 1.21621 0.98343 1.01060 0.83810 1.21497 1.05955 0.95672 0.98320 1.21760 0.94049 0.98939 0.85132 0.92891 0.94292 0.93635 0.78173 0.93550 0.91821 0.91199 0.91684 0.90939 0.89226 0.91217 0.84266 0.82240 0.92638 0.90862 0.90750 0.89095 0.93011 0.93032 0.84074 0.87383 0.91493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.15 37.16 0.34 -2.57 16 2 C 0.18 3.48 2.47 -67.93 -0.17 3.31 16 3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 4 N -0.72 -18.05 4.52 -53.43 -0.24 -18.30 16 5 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -28.75 13.06 55.49 0.72 -28.02 16 9 Si 0.90 22.79 29.55 -169.99 -5.02 17.76 16 10 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C -0.10 -1.66 1.97 -90.50 -0.18 -1.84 16 14 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 15 C -0.11 -1.39 4.86 -26.69 -0.13 -1.52 16 16 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 17 C 0.10 1.01 4.97 -3.71 -0.02 0.99 16 18 N -0.60 -8.78 2.97 -173.76 -0.52 -9.30 16 19 C 0.55 9.10 7.36 -12.18 -0.09 9.01 16 20 O -0.52 -10.96 16.38 5.35 0.09 -10.88 16 21 C -0.03 -0.40 5.11 -104.68 -0.53 -0.94 16 22 C -0.21 -2.16 7.50 -39.02 -0.29 -2.46 16 23 C 0.15 1.37 11.16 -17.62 -0.20 1.18 16 24 N -0.54 -6.05 8.82 -12.48 -0.11 -6.16 16 25 C 0.40 4.75 7.37 -155.07 -1.14 3.61 16 26 N -0.62 -6.05 3.39 -189.69 -0.64 -6.69 16 27 C 0.09 0.70 10.33 59.84 0.62 1.32 16 28 C 0.09 0.72 10.71 59.85 0.64 1.36 16 29 C -0.19 -2.45 8.93 -38.78 -0.35 -2.79 16 30 C 0.12 2.11 5.48 -3.71 -0.02 2.09 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.56 6.40 -51.93 -0.33 0.23 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.38 10.47 7.61 -40.82 -0.31 10.16 16 35 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.83 4.79 -51.92 -0.25 0.58 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.14 1.17 6.74 -52.49 -0.35 0.82 16 43 H 0.16 0.96 8.06 -52.48 -0.42 0.53 16 44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 46 H 0.07 0.61 5.97 -51.93 -0.31 0.30 16 47 H 0.09 0.76 6.81 -51.93 -0.35 0.41 16 48 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.14 1.83 6.02 -52.48 -0.32 1.52 16 51 H 0.11 2.37 6.50 -51.93 -0.34 2.03 16 52 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 406.02 15.07 6.12 6.12 Total: -1.00 -34.48 406.02 -9.88 -44.36 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.35 Total: 9.10 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.93 Total: 2.00 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -0.79 Total: -68.47 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.48 -9.88 -44.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482478870.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.777 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds