Wall clock time and date at job start Wed Apr 1 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47392 * 2 1 4 4 N 1.46498 * 109.47085 * 239.99329 * 2 1 3 5 5 C 1.36942 * 119.99801 * 85.00611 * 4 2 1 6 6 H 1.08000 * 119.99665 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99928 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00050 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99988 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47222 * 89.99850 * 9 7 5 11 11 H 1.48497 * 109.47270 * 209.99975 * 9 7 5 12 12 H 1.48504 * 109.47311 * 330.00183 * 9 7 5 13 13 C 1.53000 * 109.46638 * 119.99703 * 2 1 3 14 14 H 1.09004 * 109.49973 * 59.93826 * 13 2 1 15 15 C 1.53037 * 109.49918 * 299.83799 * 13 2 1 16 16 C 1.53042 * 109.53766 * 178.68843 * 15 13 2 17 17 C 1.53189 * 109.31614 * 61.36233 * 16 15 13 18 18 N 1.46931 * 108.77401 * 305.36350 * 17 16 15 19 19 C 1.34770 * 120.62944 * 233.62931 * 18 17 16 20 20 O 1.21517 * 119.99714 * 174.07362 * 19 18 17 21 21 C 1.48169 * 120.00227 * 354.07428 * 19 18 17 22 22 C 1.40014 * 120.88081 * 319.14740 * 21 19 18 23 23 C 1.37941 * 119.17296 * 179.97438 * 22 21 19 24 24 N 1.31924 * 121.00704 * 0.02562 * 23 22 21 25 25 C 1.32323 * 121.94025 * 359.97438 * 24 23 22 26 26 N 1.39022 * 119.64322 * 180.02562 * 25 24 23 27 27 C 1.46496 * 120.00220 * 184.99758 * 26 25 24 28 28 C 1.46499 * 119.99954 * 5.00261 * 26 25 24 29 29 C 1.39119 * 120.71026 * 359.74103 * 25 24 23 30 30 C 1.46920 * 118.73440 * 53.61265 * 18 17 16 31 31 H 1.09000 * 109.46320 * 59.99955 * 1 2 3 32 32 H 1.08997 * 109.46709 * 300.00794 * 1 2 3 33 33 H 1.08993 * 109.47392 * 179.97438 * 1 2 3 34 34 H 0.96999 * 120.00376 * 265.00826 * 4 2 1 35 35 H 0.97002 * 119.99841 * 179.97438 * 8 7 5 36 36 H 1.09006 * 109.45820 * 298.70046 * 15 13 2 37 37 H 1.08991 * 109.46191 * 58.66530 * 15 13 2 38 38 H 1.09004 * 109.49770 * 301.40635 * 16 15 13 39 39 H 1.08998 * 109.52410 * 181.33457 * 16 15 13 40 40 H 1.09009 * 109.58537 * 185.57910 * 17 16 15 41 41 H 1.08992 * 109.70486 * 65.22322 * 17 16 15 42 42 H 1.07998 * 120.41122 * 0.02562 * 22 21 19 43 43 H 1.08008 * 119.49965 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.46769 * 89.99832 * 27 26 25 45 45 H 1.08994 * 109.47195 * 210.00602 * 27 26 25 46 46 H 1.09007 * 109.46709 * 330.00457 * 27 26 25 47 47 H 1.09000 * 109.47095 * 359.97438 * 28 26 25 48 48 H 1.09000 * 109.47404 * 119.99879 * 28 26 25 49 49 H 1.09000 * 109.47017 * 240.00244 * 28 26 25 50 50 H 1.08003 * 120.53784 * 180.26579 * 29 25 24 51 51 H 1.09000 * 109.58427 * 186.60269 * 30 18 17 52 52 H 1.08997 * 109.59326 * 66.17916 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1493 -0.0077 -2.3757 6 1 1.8921 1.0402 -2.4243 7 6 2.6124 -0.6620 -3.5089 8 7 2.9263 -1.9388 -3.4495 9 14 2.7903 0.2696 -5.1182 10 1 4.1521 0.8556 -5.2031 11 1 2.5806 -0.6621 -6.2553 12 1 1.7796 1.3561 -5.1756 13 6 2.0399 -0.7212 1.2493 14 1 1.6759 -1.7487 1.2504 15 6 1.5334 0.0022 2.4992 16 6 2.0158 -0.7373 3.7493 17 6 3.5474 -0.7379 3.7783 18 7 4.0441 -1.3006 2.5151 19 6 4.9159 -2.3283 2.5170 20 8 5.2363 -2.8551 1.4699 21 6 5.4836 -2.8159 3.7958 22 6 5.8781 -1.9185 4.7955 23 6 6.4019 -2.4110 5.9727 24 7 6.5352 -3.7091 6.1666 25 6 6.1762 -4.5942 5.2508 26 7 6.3375 -5.9513 5.5057 27 6 6.0461 -6.9331 4.4582 28 6 6.7987 -6.3996 6.8219 29 6 5.6338 -4.1815 4.0380 30 6 3.5719 -0.7217 1.2500 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3632 0.5140 0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6319 -1.1525 35 1 3.2496 -2.3961 -4.2415 36 1 1.9182 1.0220 2.5095 37 1 0.4438 0.0254 2.4888 38 1 1.6519 -1.7646 3.7275 39 1 1.6352 -0.2355 4.6389 40 1 3.8968 -1.3470 4.6121 41 1 3.9132 0.2824 3.8927 42 1 5.7728 -0.8539 4.6471 43 1 6.7075 -1.7235 6.7476 44 1 6.9479 -7.1214 3.8758 45 1 5.7080 -7.8629 4.9155 46 1 5.2653 -6.5452 3.8038 47 1 6.9627 -5.5340 7.4637 48 1 6.0448 -7.0470 7.2700 49 1 7.7322 -6.9514 6.7113 50 1 5.3379 -4.9065 3.2942 51 1 3.9375 -1.3200 0.4155 52 1 3.9376 0.3009 1.1570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482478870.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:57 Heat of formation + Delta-G solvation = 11.443114 kcal Electronic energy + Delta-G solvation = -31085.370936 eV Core-core repulsion = 27084.739028 eV Total energy + Delta-G solvation = -4000.631907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.95618 -40.72881 -39.09445 -37.51439 -36.96538 -34.77330 -33.69375 -33.10886 -31.69547 -31.18468 -29.87261 -29.16499 -27.05179 -26.24173 -26.00196 -24.83785 -23.92340 -23.10876 -22.13017 -21.07042 -20.34948 -19.16342 -18.68245 -17.96837 -17.33264 -16.88528 -16.72227 -16.68160 -16.38932 -16.16830 -15.61805 -15.54261 -15.39341 -15.20964 -14.98168 -14.68427 -14.47521 -14.29259 -14.16650 -14.01590 -13.83307 -13.44851 -13.39127 -13.10415 -13.03519 -13.00451 -12.77498 -12.69494 -12.50903 -12.38234 -12.13776 -12.03351 -11.84230 -11.69148 -11.47449 -11.30885 -11.19624 -10.95633 -10.89095 -10.80266 -10.40746 -9.68488 -8.98383 -8.56002 -7.91175 -5.19759 -0.17167 0.28009 1.44631 1.47171 1.55145 1.57956 1.84438 2.00681 2.56666 2.83514 3.26376 3.42227 3.57580 3.72041 3.85398 3.91722 3.95541 4.03492 4.10206 4.13015 4.19525 4.29356 4.35317 4.43483 4.47597 4.48959 4.60209 4.65053 4.65396 4.73528 4.76224 4.78728 4.84160 4.86685 4.92567 4.93971 5.00450 5.03744 5.06264 5.13985 5.18596 5.28747 5.37968 5.45451 5.50136 5.53564 5.56968 5.64654 5.93031 6.28017 6.29736 6.32355 6.99643 7.05219 7.34802 8.13102 8.34619 9.32492 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.002617 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.444903 B =10695.561756 C =11870.570593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.051 0.949 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.079 0.921 7 C -0.083 4.083 8 N -0.973 5.973 9 Si 0.970 3.030 10 H -0.290 1.290 11 H -0.300 1.300 12 H -0.265 1.265 13 C -0.090 4.090 14 H 0.045 0.955 15 C -0.108 4.108 16 C -0.128 4.128 17 C 0.090 3.910 18 N -0.594 5.594 19 C 0.545 3.455 20 O -0.583 6.583 21 C -0.043 4.043 22 C -0.203 4.203 23 C 0.158 3.842 24 N -0.542 5.542 25 C 0.395 3.605 26 N -0.621 5.621 27 C 0.088 3.912 28 C 0.093 3.907 29 C -0.211 4.211 30 C 0.129 3.871 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.033 0.967 34 H 0.367 0.633 35 H 0.247 0.753 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.164 0.836 43 H 0.204 0.796 44 H 0.055 0.945 45 H 0.098 0.902 46 H 0.062 0.938 47 H 0.084 0.916 48 H 0.068 0.932 49 H 0.062 0.938 50 H 0.125 0.875 51 H 0.049 0.951 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.263 -0.970 29.245 29.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.064 3.936 3 H 0.069 0.931 4 N -0.378 5.378 5 C -0.362 4.362 6 H 0.097 0.903 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.800 3.200 10 H -0.217 1.217 11 H -0.227 1.227 12 H -0.190 1.190 13 C -0.110 4.110 14 H 0.064 0.936 15 C -0.146 4.146 16 C -0.166 4.166 17 C -0.031 4.031 18 N -0.325 5.325 19 C 0.333 3.667 20 O -0.464 6.464 21 C -0.054 4.054 22 C -0.226 4.226 23 C 0.000 4.000 24 N -0.260 5.260 25 C 0.160 3.840 26 N -0.335 5.335 27 C -0.055 4.055 28 C -0.049 4.049 29 C -0.237 4.237 30 C 0.007 3.993 31 H 0.053 0.947 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.198 0.802 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.181 0.819 43 H 0.220 0.780 44 H 0.073 0.927 45 H 0.117 0.883 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.086 0.914 49 H 0.081 0.919 50 H 0.143 0.857 51 H 0.068 0.932 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.769 -1.592 29.393 29.677 hybrid contribution -0.063 -0.287 -2.817 2.833 sum 3.706 -1.879 26.576 26.899 Atomic orbital electron populations 1.22324 0.97450 1.00467 1.01093 1.20484 0.92981 0.95102 0.85009 0.93088 1.42709 1.78359 1.10122 1.06565 1.19623 1.34247 0.94136 0.88209 0.90296 1.25577 1.03409 0.96812 1.01626 1.69863 1.52931 1.10469 1.29175 0.85177 0.77835 0.77462 0.79555 1.21747 1.22653 1.18985 1.21603 0.93544 0.99464 0.96354 0.93615 1.21625 1.01787 0.99449 0.91742 1.21932 0.94372 1.01022 0.99287 1.22491 0.95290 1.00879 0.84415 1.48155 1.42854 1.32603 1.08921 1.18943 0.79325 0.79633 0.88771 1.90834 1.62132 1.58318 1.35071 1.19937 0.98038 0.94386 0.93086 1.22281 1.04939 1.01350 0.93998 1.23041 0.90878 0.90108 0.95957 1.67116 1.22470 1.03866 1.32576 1.18276 0.90394 0.86549 0.88770 1.46466 1.70944 1.01055 1.15043 1.21860 1.01055 0.92041 0.90542 1.21744 0.99381 1.01123 0.82625 1.21449 1.07680 0.95592 0.99022 1.21430 0.94898 0.98014 0.84991 0.94667 0.89949 0.94740 0.80214 0.94420 0.90006 0.89948 0.93051 0.86844 0.87555 0.88211 0.81861 0.77974 0.92680 0.88344 0.91932 0.89713 0.91368 0.91909 0.85682 0.93203 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.15 71.98 0.66 -4.61 16 2 C 0.17 6.66 2.47 44.99 0.11 6.77 16 3 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 4 N -0.74 -38.38 4.52 -322.94 -1.46 -39.84 16 5 C -0.23 -13.08 9.93 84.03 0.83 -12.24 16 6 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 7 C -0.08 -4.95 5.50 84.86 0.47 -4.49 16 8 N -0.97 -63.45 13.06 21.65 0.28 -63.17 16 9 Si 0.97 48.13 29.55 68.60 2.03 50.15 16 10 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 11 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 C -0.09 -2.90 1.97 -10.72 -0.02 -2.92 16 14 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 15 C -0.11 -2.26 4.86 30.62 0.15 -2.11 16 16 C -0.13 -2.12 6.08 30.67 0.19 -1.93 16 17 C 0.09 1.58 4.97 86.36 0.43 2.01 16 18 N -0.59 -17.46 2.97 -821.96 -2.44 -19.91 16 19 C 0.54 19.02 7.36 86.88 0.64 19.66 16 20 O -0.58 -27.39 16.38 -3.77 -0.06 -27.45 16 21 C -0.04 -1.17 5.11 -19.90 -0.10 -1.27 16 22 C -0.20 -3.66 7.50 22.63 0.17 -3.49 16 23 C 0.16 2.42 11.16 84.61 0.94 3.37 16 24 N -0.54 -11.08 8.82 -193.40 -1.71 -12.79 16 25 C 0.39 9.17 7.37 133.08 0.98 10.15 16 26 N -0.62 -11.82 3.39 -754.06 -2.56 -14.38 16 27 C 0.09 1.38 10.33 127.77 1.32 2.70 16 28 C 0.09 1.26 10.71 127.77 1.37 2.63 16 29 C -0.21 -5.74 8.93 22.79 0.20 -5.53 16 30 C 0.13 4.64 5.48 86.36 0.47 5.12 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 2.10 6.40 -2.39 -0.02 2.09 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 34 H 0.37 21.44 7.61 -92.71 -0.71 20.74 16 35 H 0.25 15.73 8.31 -92.71 -0.77 14.96 16 36 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.08 1.57 6.36 -2.39 -0.02 1.55 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.59 4.79 -2.38 -0.01 1.58 16 41 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 42 H 0.16 2.10 6.74 -2.91 -0.02 2.08 16 43 H 0.20 1.33 8.06 -2.91 -0.02 1.31 16 44 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.10 1.02 8.07 -2.39 -0.02 1.00 16 46 H 0.06 1.13 5.97 -2.38 -0.01 1.12 16 47 H 0.08 1.26 6.81 -2.39 -0.02 1.24 16 48 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 50 H 0.13 3.67 6.02 -2.91 -0.02 3.65 16 51 H 0.05 2.40 6.50 -2.39 -0.02 2.38 16 52 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -82.62 406.02 3.12 -79.50 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: 0.22 Total: 34.06 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 8.81 Total: 13.81 kcal Atomic # 7 Polarization: -142.19 SS G_CDS: -7.88 Total: -150.08 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.06 Total: -27.45 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.15 kcal Total: -82.62 3.12 -79.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482478870.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.945 kcal (2) G-P(sol) polarization free energy of solvation -82.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds