Wall clock time and date at job start Wed Apr 1 2020 05:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47242 * 2 1 4 4 N 1.46498 * 109.46827 * 119.99776 * 2 1 3 5 5 C 1.36944 * 119.99959 * 275.00123 * 4 2 1 6 6 H 1.07998 * 120.00053 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99907 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99858 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00110 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46943 * 90.00052 * 9 7 5 11 11 H 1.48497 * 109.47404 * 210.00290 * 9 7 5 12 12 H 1.48505 * 109.46778 * 330.00488 * 9 7 5 13 13 C 1.52994 * 109.47349 * 239.99707 * 2 1 3 14 14 H 1.09001 * 109.49783 * 299.93599 * 13 2 1 15 15 C 1.53041 * 109.49832 * 60.00166 * 13 2 1 16 16 C 1.53045 * 109.54004 * 181.31475 * 15 13 2 17 17 C 1.53188 * 109.30984 * 298.63840 * 16 15 13 18 18 N 1.46928 * 108.78095 * 54.63308 * 17 16 15 19 19 C 1.34776 * 120.63040 * 126.36477 * 18 17 16 20 20 O 1.21510 * 119.99849 * 176.19149 * 19 18 17 21 21 C 1.48168 * 120.00054 * 356.47188 * 19 18 17 22 22 C 1.40018 * 120.88159 * 49.72969 * 21 19 18 23 23 C 1.37950 * 119.17407 * 179.77276 * 22 21 19 24 24 N 1.31920 * 120.99989 * 0.51576 * 23 22 21 25 25 C 1.32310 * 121.94414 * 359.73599 * 24 23 22 26 26 N 1.39031 * 119.64116 * 179.97438 * 25 24 23 27 27 C 1.46502 * 119.99710 * 185.02147 * 26 25 24 28 28 C 1.46501 * 119.99936 * 5.02518 * 26 25 24 29 29 C 1.39119 * 120.71677 * 359.97438 * 25 24 23 30 30 C 1.46921 * 118.73740 * 306.64195 * 18 17 16 31 31 H 1.08998 * 109.47503 * 300.00348 * 1 2 3 32 32 H 1.09011 * 109.46882 * 60.00091 * 1 2 3 33 33 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 34 34 H 0.96996 * 120.00369 * 95.00271 * 4 2 1 35 35 H 0.97001 * 119.99427 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.45919 * 61.29716 * 15 13 2 37 37 H 1.08997 * 109.44781 * 301.32928 * 15 13 2 38 38 H 1.08996 * 109.49496 * 178.68558 * 16 15 13 39 39 H 1.08994 * 109.49200 * 58.58419 * 16 15 13 40 40 H 1.09004 * 109.59000 * 294.83912 * 17 16 15 41 41 H 1.09003 * 109.58536 * 174.42232 * 17 16 15 42 42 H 1.07997 * 120.40875 * 359.97438 * 22 21 19 43 43 H 1.08002 * 119.49674 * 180.27303 * 23 22 21 44 44 H 1.08999 * 109.47309 * 90.00291 * 27 26 25 45 45 H 1.09006 * 109.46932 * 210.00325 * 27 26 25 46 46 H 1.08995 * 109.47325 * 329.99763 * 27 26 25 47 47 H 1.08996 * 109.47331 * 359.97438 * 28 26 25 48 48 H 1.08996 * 109.47000 * 120.00397 * 28 26 25 49 49 H 1.09005 * 109.46680 * 239.99546 * 28 26 25 50 50 H 1.07996 * 120.53853 * 179.97438 * 29 25 24 51 51 H 1.08994 * 109.58589 * 173.14084 * 30 18 17 52 52 H 1.08999 * 109.59086 * 293.57207 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8917 1.0404 2.4244 7 6 2.6111 -0.6618 3.5094 8 7 2.9241 -1.9389 3.4503 9 14 2.7901 0.2702 5.1183 10 1 1.5224 0.1801 5.8862 11 1 3.8942 -0.3236 5.9142 12 1 3.0961 1.6952 4.8334 13 6 2.0400 -0.7213 -1.2491 14 1 1.6779 -1.7494 -1.2490 15 6 1.5303 -0.0004 -2.4992 16 6 2.0128 -0.7400 -3.7492 17 6 3.5443 -0.7370 -3.7800 18 7 4.0440 -1.2971 -2.5168 19 6 4.9182 -2.3229 -2.5187 20 8 5.3771 -2.7319 -1.4706 21 6 5.3244 -2.9478 -3.7993 22 6 5.7584 -2.1642 -4.8755 23 6 6.1328 -2.7832 -6.0501 24 7 6.0776 -4.0953 -6.1742 25 6 5.6694 -4.8753 -5.1865 26 7 5.6296 -6.2529 -5.3698 27 6 5.0761 -7.1154 -4.3228 28 6 6.1412 -6.8420 -6.6097 29 6 5.2796 -4.3320 -3.9666 30 6 3.5677 -0.7218 -1.2516 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2490 -1.6317 1.1527 35 1 3.2474 -2.3961 4.2424 36 1 1.9126 1.0203 -2.5110 37 1 0.4406 0.0201 -2.4873 38 1 1.6300 -0.2394 -4.6385 39 1 1.6514 -1.7680 -3.7257 40 1 3.9056 0.2850 -3.8947 41 1 3.8942 -1.3461 -4.6135 42 1 5.8026 -1.0888 -4.7859 43 1 6.4727 -2.1841 -6.8820 44 1 4.0065 -7.2460 -4.4874 45 1 5.5697 -8.0868 -4.3537 46 1 5.2403 -6.6553 -3.3485 47 1 6.5088 -6.0509 -7.2632 48 1 6.9547 -7.5290 -6.3769 49 1 5.3400 -7.3846 -7.1117 50 1 4.9465 -4.9713 -3.1624 51 1 3.9329 -1.3208 -0.4175 52 1 3.9307 0.3015 -1.1559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482478878.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:03 Heat of formation + Delta-G solvation = 32.943736 kcal Electronic energy + Delta-G solvation = -31139.008238 eV Core-core repulsion = 27139.308668 eV Total energy + Delta-G solvation = -3999.699570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.93728 -39.67480 -37.76667 -36.71195 -35.44372 -33.21884 -32.52566 -31.75258 -30.76416 -29.77538 -28.60255 -28.14825 -26.00003 -25.28816 -24.49859 -23.41265 -22.77933 -22.21945 -20.94710 -19.61172 -19.25808 -17.77453 -17.06271 -16.97872 -16.36651 -15.90351 -15.73855 -15.53288 -15.05330 -14.86586 -14.50557 -14.38183 -14.33007 -13.89033 -13.68188 -13.62587 -13.36947 -13.05927 -12.85104 -12.79785 -12.70956 -12.41287 -12.36028 -12.32329 -12.01790 -11.85721 -11.31490 -11.12248 -10.98778 -10.84457 -10.69835 -10.61196 -10.27288 -10.24375 -10.16678 -10.10833 -9.85043 -9.79455 -9.53909 -9.37643 -8.86623 -8.46208 -7.80255 -6.89783 -5.69263 -2.98544 0.84175 1.10069 2.57204 2.82169 3.06806 3.47414 3.52238 3.54502 3.68624 4.23197 4.34516 4.62159 4.72299 4.77936 4.86113 4.90605 4.95379 5.01673 5.02273 5.07814 5.14004 5.24917 5.31958 5.38646 5.39907 5.47890 5.53371 5.56175 5.62505 5.62633 5.71958 5.81856 5.82825 5.93945 6.00983 6.04148 6.14300 6.21565 6.22706 6.25427 6.44586 6.49453 6.53155 6.62102 6.73083 6.75475 6.93641 7.06513 7.12173 7.49643 7.75647 7.87218 8.23221 8.48343 9.59474 10.17138 10.51451 11.52972 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.002654 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.883337 B =10546.967634 C =11602.291563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.103 4.103 14 H 0.069 0.931 15 C -0.115 4.115 16 C -0.134 4.134 17 C 0.095 3.905 18 N -0.600 5.600 19 C 0.552 3.448 20 O -0.517 6.517 21 C -0.027 4.027 22 C -0.212 4.212 23 C 0.148 3.852 24 N -0.537 5.537 25 C 0.403 3.597 26 N -0.617 5.617 27 C 0.091 3.909 28 C 0.095 3.905 29 C -0.192 4.192 30 C 0.123 3.877 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.139 0.861 43 H 0.160 0.840 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.051 0.949 49 H 0.051 0.949 50 H 0.141 0.859 51 H 0.107 0.893 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -4.072 -25.104 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.366 5.366 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.219 1.219 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.123 4.123 14 H 0.087 0.913 15 C -0.153 4.153 16 C -0.172 4.172 17 C -0.028 4.028 18 N -0.333 5.333 19 C 0.339 3.661 20 O -0.392 6.392 21 C -0.038 4.038 22 C -0.236 4.236 23 C -0.009 4.009 24 N -0.255 5.255 25 C 0.169 3.831 26 N -0.331 5.331 27 C -0.053 4.053 28 C -0.048 4.048 29 C -0.217 4.217 30 C 0.002 3.998 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.156 0.844 43 H 0.178 0.822 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.109 0.891 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.158 0.842 51 H 0.126 0.874 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.270 -4.754 -25.162 25.815 hybrid contribution -0.205 0.514 1.730 1.817 sum 3.065 -4.240 -23.431 24.008 Atomic orbital electron populations 1.22480 0.99303 1.00783 0.99879 1.20169 0.91829 0.95260 0.85742 0.93485 1.42453 1.78087 1.10745 1.05284 1.19188 1.36676 0.93777 0.87318 0.91292 1.24734 1.02209 0.95941 0.97973 1.69668 1.50669 1.08624 1.28757 0.86241 0.77212 0.78811 0.84215 1.21872 1.21843 1.20834 1.21688 0.94635 1.00535 0.95441 0.91254 1.21636 1.01074 0.99064 0.93525 1.21921 0.94945 1.01515 0.98804 1.22087 0.94880 0.99363 0.86494 1.48097 1.43613 1.33341 1.08222 1.18310 0.79694 0.79848 0.88265 1.90876 1.53716 1.62345 1.32289 1.20098 0.96301 0.93621 0.93763 1.21987 1.06412 1.01116 0.94040 1.22321 0.93187 0.89031 0.96385 1.66962 1.20904 1.06358 1.31277 1.18156 0.90872 0.85276 0.88819 1.46189 1.66057 1.01624 1.19237 1.21769 0.98437 0.94165 0.90887 1.21623 0.98108 0.99131 0.85974 1.21453 1.07996 0.94446 0.97853 1.21664 0.93926 0.99179 0.85076 0.92875 0.94285 0.93642 0.78215 0.93549 0.91810 0.91191 0.90963 0.91699 0.91159 0.89088 0.84353 0.82237 0.92708 0.90829 0.90656 0.89093 0.93001 0.93024 0.84171 0.87433 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.14 37.16 0.34 -2.56 16 2 C 0.18 3.47 2.48 -67.94 -0.17 3.30 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 N -0.72 -18.00 4.52 -53.43 -0.24 -18.25 16 5 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 9 Si 0.90 22.78 29.55 -169.99 -5.02 17.75 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C -0.10 -1.66 1.96 -90.72 -0.18 -1.83 16 14 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 15 C -0.11 -1.39 4.85 -26.69 -0.13 -1.52 16 16 C -0.13 -1.36 6.08 -26.61 -0.16 -1.52 16 17 C 0.09 0.99 5.40 -3.71 -0.02 0.97 16 18 N -0.60 -8.79 2.98 -174.02 -0.52 -9.31 16 19 C 0.55 9.13 7.30 -12.18 -0.09 9.04 16 20 O -0.52 -11.00 16.49 5.36 0.09 -10.91 16 21 C -0.03 -0.36 5.04 -104.68 -0.53 -0.88 16 22 C -0.21 -2.19 7.47 -39.02 -0.29 -2.48 16 23 C 0.15 1.39 11.16 -17.62 -0.20 1.19 16 24 N -0.54 -6.08 8.82 -12.48 -0.11 -6.19 16 25 C 0.40 4.79 7.37 -155.07 -1.14 3.64 16 26 N -0.62 -6.09 3.39 -189.69 -0.64 -6.73 16 27 C 0.09 0.70 10.32 59.85 0.62 1.32 16 28 C 0.09 0.72 10.71 59.85 0.64 1.37 16 29 C -0.19 -2.49 9.01 -38.78 -0.35 -2.84 16 30 C 0.12 2.12 5.44 -3.93 -0.02 2.10 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.04 0.56 6.40 -51.92 -0.33 0.23 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.38 10.40 7.61 -40.82 -0.31 10.09 16 35 H 0.25 7.65 8.31 -40.82 -0.34 7.32 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.85 4.52 -51.93 -0.23 0.61 16 42 H 0.14 1.16 7.06 -52.49 -0.37 0.79 16 43 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 46 H 0.07 0.64 5.97 -51.93 -0.31 0.33 16 47 H 0.09 0.77 6.81 -51.93 -0.35 0.41 16 48 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.14 1.82 6.03 -52.49 -0.32 1.50 16 51 H 0.11 2.36 6.52 -51.93 -0.34 2.02 16 52 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 406.50 15.07 6.13 6.13 Total: -1.00 -34.44 406.50 -9.88 -44.32 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -8.36 Total: 9.06 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -1.92 Total: 2.09 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -0.79 Total: -68.43 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.44 -9.88 -44.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482478878.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.264 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds