Wall clock time and date at job start Wed Apr 1 2020 05:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47242 * 2 1 4 4 N 1.46498 * 109.46827 * 119.99776 * 2 1 3 5 5 C 1.36944 * 119.99959 * 275.00123 * 4 2 1 6 6 H 1.07998 * 120.00053 * 0.02562 * 5 4 2 7 7 C 1.38812 * 119.99907 * 179.97438 * 5 4 2 8 8 N 1.31620 * 119.99858 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00110 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46943 * 90.00052 * 9 7 5 11 11 H 1.48497 * 109.47404 * 210.00290 * 9 7 5 12 12 H 1.48505 * 109.46778 * 330.00488 * 9 7 5 13 13 C 1.52994 * 109.47349 * 239.99707 * 2 1 3 14 14 H 1.09001 * 109.49783 * 299.93599 * 13 2 1 15 15 C 1.53041 * 109.49832 * 60.00166 * 13 2 1 16 16 C 1.53045 * 109.54004 * 181.31475 * 15 13 2 17 17 C 1.53188 * 109.30984 * 298.63840 * 16 15 13 18 18 N 1.46928 * 108.78095 * 54.63308 * 17 16 15 19 19 C 1.34776 * 120.63040 * 126.36477 * 18 17 16 20 20 O 1.21510 * 119.99849 * 176.19149 * 19 18 17 21 21 C 1.48168 * 120.00054 * 356.47188 * 19 18 17 22 22 C 1.40018 * 120.88159 * 49.72969 * 21 19 18 23 23 C 1.37950 * 119.17407 * 179.77276 * 22 21 19 24 24 N 1.31920 * 120.99989 * 0.51576 * 23 22 21 25 25 C 1.32310 * 121.94414 * 359.73599 * 24 23 22 26 26 N 1.39031 * 119.64116 * 179.97438 * 25 24 23 27 27 C 1.46502 * 119.99710 * 185.02147 * 26 25 24 28 28 C 1.46501 * 119.99936 * 5.02518 * 26 25 24 29 29 C 1.39119 * 120.71677 * 359.97438 * 25 24 23 30 30 C 1.46921 * 118.73740 * 306.64195 * 18 17 16 31 31 H 1.08998 * 109.47503 * 300.00348 * 1 2 3 32 32 H 1.09011 * 109.46882 * 60.00091 * 1 2 3 33 33 H 1.08997 * 109.47233 * 179.97438 * 1 2 3 34 34 H 0.96996 * 120.00369 * 95.00271 * 4 2 1 35 35 H 0.97001 * 119.99427 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.45919 * 61.29716 * 15 13 2 37 37 H 1.08997 * 109.44781 * 301.32928 * 15 13 2 38 38 H 1.08996 * 109.49496 * 178.68558 * 16 15 13 39 39 H 1.08994 * 109.49200 * 58.58419 * 16 15 13 40 40 H 1.09004 * 109.59000 * 294.83912 * 17 16 15 41 41 H 1.09003 * 109.58536 * 174.42232 * 17 16 15 42 42 H 1.07997 * 120.40875 * 359.97438 * 22 21 19 43 43 H 1.08002 * 119.49674 * 180.27303 * 23 22 21 44 44 H 1.08999 * 109.47309 * 90.00291 * 27 26 25 45 45 H 1.09006 * 109.46932 * 210.00325 * 27 26 25 46 46 H 1.08995 * 109.47325 * 329.99763 * 27 26 25 47 47 H 1.08996 * 109.47331 * 359.97438 * 28 26 25 48 48 H 1.08996 * 109.47000 * 120.00397 * 28 26 25 49 49 H 1.09005 * 109.46680 * 239.99546 * 28 26 25 50 50 H 1.07996 * 120.53853 * 179.97438 * 29 25 24 51 51 H 1.08994 * 109.58589 * 173.14084 * 30 18 17 52 52 H 1.08999 * 109.59086 * 293.57207 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1490 -0.0074 2.3758 6 1 1.8917 1.0404 2.4244 7 6 2.6111 -0.6618 3.5094 8 7 2.9241 -1.9389 3.4503 9 14 2.7901 0.2702 5.1183 10 1 1.5224 0.1801 5.8862 11 1 3.8942 -0.3236 5.9142 12 1 3.0961 1.6952 4.8334 13 6 2.0400 -0.7213 -1.2491 14 1 1.6779 -1.7494 -1.2490 15 6 1.5303 -0.0004 -2.4992 16 6 2.0128 -0.7400 -3.7492 17 6 3.5443 -0.7370 -3.7800 18 7 4.0440 -1.2971 -2.5168 19 6 4.9182 -2.3229 -2.5187 20 8 5.3771 -2.7319 -1.4706 21 6 5.3244 -2.9478 -3.7993 22 6 5.7584 -2.1642 -4.8755 23 6 6.1328 -2.7832 -6.0501 24 7 6.0776 -4.0953 -6.1742 25 6 5.6694 -4.8753 -5.1865 26 7 5.6296 -6.2529 -5.3698 27 6 5.0761 -7.1154 -4.3228 28 6 6.1412 -6.8420 -6.6097 29 6 5.2796 -4.3320 -3.9666 30 6 3.5677 -0.7218 -1.2516 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 2.2490 -1.6317 1.1527 35 1 3.2474 -2.3961 4.2424 36 1 1.9126 1.0203 -2.5110 37 1 0.4406 0.0201 -2.4873 38 1 1.6300 -0.2394 -4.6385 39 1 1.6514 -1.7680 -3.7257 40 1 3.9056 0.2850 -3.8947 41 1 3.8942 -1.3461 -4.6135 42 1 5.8026 -1.0888 -4.7859 43 1 6.4727 -2.1841 -6.8820 44 1 4.0065 -7.2460 -4.4874 45 1 5.5697 -8.0868 -4.3537 46 1 5.2403 -6.6553 -3.3485 47 1 6.5088 -6.0509 -7.2632 48 1 6.9547 -7.5290 -6.3769 49 1 5.3400 -7.3846 -7.1117 50 1 4.9465 -4.9713 -3.1624 51 1 3.9329 -1.3208 -0.4175 52 1 3.9307 0.3015 -1.1559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482478878.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:02 Heat of formation + Delta-G solvation = 11.062751 kcal Electronic energy + Delta-G solvation = -31139.957069 eV Core-core repulsion = 27139.308668 eV Total energy + Delta-G solvation = -4000.648401 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.95719 -40.74047 -39.11860 -37.50781 -36.97055 -34.77034 -33.70266 -33.10983 -31.70240 -31.20626 -29.88475 -29.16856 -27.05109 -26.24899 -26.00124 -24.85274 -23.93292 -23.11442 -22.13133 -21.07673 -20.33471 -19.17318 -18.69398 -17.95290 -17.41163 -16.89392 -16.73280 -16.70735 -16.34556 -16.17113 -15.64194 -15.54935 -15.38831 -15.22967 -14.99476 -14.72070 -14.48597 -14.25503 -14.16034 -14.00735 -13.83727 -13.46032 -13.38660 -13.10641 -13.02499 -13.00113 -12.80249 -12.69093 -12.52172 -12.38256 -12.16062 -12.02956 -11.84993 -11.69721 -11.49709 -11.30700 -11.20562 -10.96506 -10.91977 -10.78306 -10.38241 -9.70299 -8.98726 -8.56350 -7.91610 -5.20045 -0.12158 0.27744 1.44539 1.46982 1.49259 1.55045 1.85366 2.00209 2.56437 2.81666 3.25412 3.41933 3.57278 3.71504 3.85019 3.92110 3.95457 4.02852 4.10245 4.12247 4.18889 4.29599 4.34422 4.43057 4.47847 4.48869 4.59711 4.64754 4.64841 4.72822 4.76136 4.79044 4.83921 4.86225 4.91730 4.93450 5.00287 5.03221 5.06129 5.14178 5.17874 5.28112 5.37399 5.45167 5.49675 5.52265 5.56424 5.64162 5.92919 6.27645 6.29451 6.31169 6.98072 7.05426 7.34609 8.12686 8.34151 9.32061 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.002654 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.883337 B =10546.967634 C =11602.291563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.050 0.950 4 N -0.738 5.738 5 C -0.230 4.230 6 H 0.079 0.921 7 C -0.082 4.082 8 N -0.973 5.973 9 Si 0.970 3.030 10 H -0.287 1.287 11 H -0.301 1.301 12 H -0.266 1.266 13 C -0.089 4.089 14 H 0.047 0.953 15 C -0.108 4.108 16 C -0.128 4.128 17 C 0.088 3.912 18 N -0.593 5.593 19 C 0.546 3.454 20 O -0.583 6.583 21 C -0.040 4.040 22 C -0.206 4.206 23 C 0.160 3.840 24 N -0.543 5.543 25 C 0.397 3.603 26 N -0.621 5.621 27 C 0.087 3.913 28 C 0.093 3.907 29 C -0.215 4.215 30 C 0.130 3.870 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.367 0.633 35 H 0.247 0.753 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.163 0.837 43 H 0.204 0.796 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.059 0.941 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.125 0.875 51 H 0.049 0.951 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.107 -1.913 -29.028 29.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.065 3.935 3 H 0.068 0.932 4 N -0.378 5.378 5 C -0.362 4.362 6 H 0.097 0.903 7 C -0.274 4.274 8 N -0.624 5.624 9 Si 0.799 3.201 10 H -0.214 1.214 11 H -0.228 1.228 12 H -0.191 1.191 13 C -0.110 4.110 14 H 0.065 0.935 15 C -0.146 4.146 16 C -0.166 4.166 17 C -0.033 4.033 18 N -0.324 5.324 19 C 0.335 3.665 20 O -0.464 6.464 21 C -0.051 4.051 22 C -0.229 4.229 23 C 0.002 3.998 24 N -0.261 5.261 25 C 0.162 3.838 26 N -0.335 5.335 27 C -0.055 4.055 28 C -0.049 4.049 29 C -0.241 4.241 30 C 0.007 3.993 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.198 0.802 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.131 0.869 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.181 0.819 43 H 0.220 0.780 44 H 0.079 0.921 45 H 0.114 0.886 46 H 0.078 0.922 47 H 0.103 0.897 48 H 0.083 0.917 49 H 0.085 0.915 50 H 0.142 0.858 51 H 0.068 0.932 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.573 -2.553 -29.168 29.392 hybrid contribution -0.012 -0.142 2.823 2.826 sum 2.561 -2.694 -26.345 26.606 Atomic orbital electron populations 1.22322 0.97373 1.00519 1.01105 1.20477 0.93019 0.95072 0.84977 0.93179 1.42701 1.78380 1.10133 1.06538 1.19618 1.34290 0.94147 0.88188 0.90331 1.25573 1.03382 0.96834 1.01594 1.69859 1.52939 1.10461 1.29138 0.85180 0.76712 0.78155 0.80007 1.21436 1.22831 1.19119 1.21528 0.93468 0.99580 0.96384 0.93452 1.21629 1.01802 0.99432 0.91762 1.21923 0.94340 1.01053 0.99253 1.22493 0.95384 1.00855 0.84546 1.48175 1.42700 1.32635 1.08919 1.18936 0.79182 0.79678 0.88751 1.90835 1.56306 1.64335 1.34895 1.19914 0.98100 0.93990 0.93057 1.22216 1.05505 1.02035 0.93100 1.23033 0.91140 0.88622 0.96990 1.67110 1.20929 1.07267 1.30835 1.18262 0.90800 0.86305 0.88431 1.46474 1.65631 1.01193 1.20190 1.21865 0.99093 0.94686 0.89878 1.21743 0.99000 0.99108 0.85027 1.21404 1.09784 0.94483 0.98400 1.21328 0.94849 0.98129 0.84961 0.94644 0.89962 0.94661 0.80198 0.94413 0.90125 0.89878 0.86925 0.92932 0.88399 0.87353 0.81932 0.77972 0.92081 0.88613 0.92197 0.89731 0.91729 0.91540 0.85764 0.93193 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 9.14 71.98 0.66 -4.57 16 2 C 0.17 6.66 2.48 44.99 0.11 6.78 16 3 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 4 N -0.74 -38.28 4.52 -322.95 -1.46 -39.74 16 5 C -0.23 -13.09 9.93 84.03 0.83 -12.25 16 6 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 7 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 8 N -0.97 -63.24 13.06 21.65 0.28 -62.96 16 9 Si 0.97 48.11 29.55 68.60 2.03 50.14 16 10 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 12 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 13 C -0.09 -2.89 1.96 -10.86 -0.02 -2.91 16 14 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 15 C -0.11 -2.27 4.85 30.62 0.15 -2.13 16 16 C -0.13 -2.12 6.08 30.67 0.19 -1.94 16 17 C 0.09 1.57 5.40 86.36 0.47 2.04 16 18 N -0.59 -17.54 2.98 -822.78 -2.45 -19.99 16 19 C 0.55 19.08 7.30 86.88 0.63 19.71 16 20 O -0.58 -27.38 16.49 -3.75 -0.06 -27.45 16 21 C -0.04 -1.07 5.04 -19.90 -0.10 -1.17 16 22 C -0.21 -3.73 7.47 22.63 0.17 -3.56 16 23 C 0.16 2.46 11.16 84.61 0.94 3.41 16 24 N -0.54 -11.13 8.82 -193.40 -1.71 -12.84 16 25 C 0.40 9.23 7.37 133.08 0.98 10.22 16 26 N -0.62 -11.87 3.39 -754.04 -2.56 -14.43 16 27 C 0.09 1.38 10.32 127.77 1.32 2.70 16 28 C 0.09 1.27 10.71 127.77 1.37 2.64 16 29 C -0.21 -5.83 9.01 22.79 0.21 -5.63 16 30 C 0.13 4.69 5.44 86.22 0.47 5.16 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 2.09 6.40 -2.38 -0.02 2.07 16 33 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.37 21.33 7.61 -92.71 -0.71 20.62 16 35 H 0.25 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.08 1.57 6.36 -2.39 -0.02 1.56 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.09 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.11 1.63 4.52 -2.39 -0.01 1.62 16 42 H 0.16 2.10 7.06 -2.91 -0.02 2.08 16 43 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.10 1.05 8.07 -2.38 -0.02 1.03 16 46 H 0.06 1.13 5.97 -2.39 -0.01 1.12 16 47 H 0.08 1.28 6.81 -2.39 -0.02 1.26 16 48 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 50 H 0.12 3.64 6.03 -2.91 -0.02 3.62 16 51 H 0.05 2.40 6.52 -2.39 -0.02 2.39 16 52 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -82.28 406.50 3.14 -79.14 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: 0.22 Total: 34.08 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 8.84 Total: 14.04 kcal Atomic # 7 Polarization: -142.06 SS G_CDS: -7.89 Total: -149.95 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.06 Total: -27.45 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -82.28 3.14 -79.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482478878.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.207 kcal (2) G-P(sol) polarization free energy of solvation -82.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds