Wall clock time and date at job start Wed Apr 1 2020 05:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46889 * 2 1 4 4 N 1.46492 * 109.47262 * 120.00224 * 2 1 3 5 5 C 1.36933 * 120.00206 * 274.99730 * 4 2 1 6 6 H 1.08003 * 119.99724 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00378 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99800 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00412 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47235 * 59.99580 * 9 7 5 11 11 H 1.48495 * 109.47367 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46711 * 299.99823 * 9 7 5 13 13 C 1.53007 * 109.46778 * 240.00352 * 2 1 3 14 14 H 1.08998 * 109.52122 * 185.07686 * 13 2 1 15 15 C 1.53044 * 109.49615 * 64.99910 * 13 2 1 16 16 C 1.53043 * 109.53348 * 178.68112 * 15 13 2 17 17 C 1.53196 * 109.31039 * 61.36621 * 16 15 13 18 18 N 1.46922 * 108.77388 * 305.35981 * 17 16 15 19 19 C 1.34780 * 120.62807 * 233.63078 * 18 17 16 20 20 O 1.21519 * 119.99539 * 174.14011 * 19 18 17 21 21 C 1.48161 * 120.00352 * 354.13790 * 19 18 17 22 22 C 1.40020 * 120.88231 * 323.77706 * 21 19 18 23 23 C 1.37938 * 119.17556 * 179.97438 * 22 21 19 24 24 N 1.31923 * 121.00411 * 359.97438 * 23 22 21 25 25 C 1.32313 * 121.94288 * 0.02562 * 24 23 22 26 26 N 1.39024 * 119.64390 * 179.97438 * 25 24 23 27 27 C 1.46501 * 120.00056 * 191.43096 * 26 25 24 28 28 C 1.46497 * 119.99732 * 11.43716 * 26 25 24 29 29 C 1.39125 * 120.70921 * 359.74203 * 25 24 23 30 30 C 1.46921 * 118.74003 * 53.61187 * 18 17 16 31 31 H 1.08996 * 109.47459 * 59.99695 * 1 2 3 32 32 H 1.09005 * 109.47268 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46885 * 299.99517 * 1 2 3 34 34 H 0.97004 * 120.00135 * 95.00109 * 4 2 1 35 35 H 0.97002 * 120.00085 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.45876 * 298.69717 * 15 13 2 37 37 H 1.08999 * 109.46262 * 58.66420 * 15 13 2 38 38 H 1.09004 * 109.49677 * 181.31244 * 16 15 13 39 39 H 1.08998 * 109.50093 * 301.41160 * 16 15 13 40 40 H 1.09004 * 109.57953 * 185.57418 * 17 16 15 41 41 H 1.08997 * 109.70567 * 65.22139 * 17 16 15 42 42 H 1.08003 * 120.40608 * 359.97438 * 22 21 19 43 43 H 1.08000 * 119.49715 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.47249 * 356.52014 * 27 26 25 45 45 H 1.08994 * 109.47165 * 116.51848 * 27 26 25 46 46 H 1.09002 * 109.46820 * 236.51978 * 27 26 25 47 47 H 1.08996 * 109.47605 * 89.99645 * 28 26 25 48 48 H 1.09004 * 109.46742 * 209.99849 * 28 26 25 49 49 H 1.09004 * 109.47213 * 329.99143 * 28 26 25 50 50 H 1.08007 * 120.52969 * 180.26271 * 29 25 24 51 51 H 1.08994 * 109.59204 * 186.59824 * 30 18 17 52 52 H 1.09000 * 109.58569 * 66.17569 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3756 6 1 1.8919 1.0402 2.4243 7 6 2.6124 -0.6618 3.5089 8 7 2.9254 -1.9389 3.4497 9 14 2.7902 0.2698 5.1182 10 1 1.4675 0.8056 5.5288 11 1 3.2993 -0.6486 6.1682 12 1 3.7447 1.3929 4.9371 13 6 2.0399 -0.7212 -1.2494 14 1 3.1261 -0.8011 -1.2060 15 6 1.6353 0.0688 -2.4961 16 6 2.1731 -0.6344 -3.7445 17 6 1.5609 -2.0355 -3.8400 18 7 1.8218 -2.7521 -2.5842 19 6 2.4130 -3.9633 -2.5948 20 8 2.7200 -4.4987 -1.5480 21 6 2.6885 -4.6420 -3.8827 22 6 1.7977 -4.5331 -4.9574 23 6 2.0894 -5.1793 -6.1407 24 7 3.1908 -5.8936 -6.2713 25 6 4.0613 -6.0248 -5.2835 26 7 5.2065 -6.7897 -5.4734 27 6 6.0456 -7.1492 -4.3275 28 6 5.5743 -7.2362 -6.8193 29 6 3.8452 -5.4016 -4.0586 30 6 1.4264 -2.1232 -1.3166 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 2.2490 -1.6318 1.1525 35 1 3.2488 -2.3962 4.2417 36 1 0.5483 0.1271 -2.5521 37 1 2.0503 1.0751 -2.4390 38 1 1.9046 -0.0589 -4.6304 39 1 3.2580 -0.7152 -3.6776 40 1 2.0146 -2.5765 -4.6705 41 1 0.4855 -1.9567 -3.9992 42 1 0.8934 -3.9505 -4.8611 43 1 1.4061 -5.0985 -6.9732 44 1 5.6505 -6.6799 -3.4265 45 1 6.0459 -8.2320 -4.2029 46 1 7.0646 -6.8030 -4.5006 47 1 6.2159 -6.4895 -7.2872 48 1 6.1079 -8.1844 -6.7544 49 1 4.6727 -7.3669 -7.4178 50 1 4.5598 -5.5072 -3.2556 51 1 1.7909 -2.7221 -0.4821 52 1 0.3399 -2.0493 -1.2688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482478881.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:08 Heat of formation + Delta-G solvation = 39.891758 kcal Electronic energy + Delta-G solvation = -31111.392578 eV Core-core repulsion = 27111.994297 eV Total energy + Delta-G solvation = -3999.398281 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.99673 -39.72848 -37.82808 -36.74013 -35.46382 -33.25589 -32.49650 -31.88054 -30.77975 -29.69332 -28.58201 -27.80688 -26.15734 -25.38726 -24.58471 -23.52565 -23.10636 -22.21568 -21.05918 -19.73184 -18.68766 -17.82836 -17.13290 -16.99235 -16.34795 -15.85351 -15.75222 -15.56368 -15.07387 -14.83423 -14.68052 -14.38223 -14.31364 -13.91371 -13.70525 -13.62966 -13.56216 -13.00874 -12.87023 -12.82822 -12.68872 -12.50224 -12.40701 -12.39213 -11.94675 -11.77483 -11.50683 -11.15611 -10.98235 -10.81877 -10.61049 -10.42631 -10.28074 -10.26333 -10.21389 -10.07412 -9.90200 -9.82869 -9.53286 -9.42349 -8.85584 -8.45458 -7.80326 -6.90068 -5.68681 -2.98407 0.75963 1.06991 2.58567 2.85019 3.02530 3.47553 3.51699 3.53263 3.69899 4.20900 4.32386 4.62087 4.67988 4.73873 4.87677 4.89540 4.94681 4.99739 5.02081 5.05970 5.09781 5.23381 5.34436 5.35850 5.38679 5.45729 5.52192 5.56390 5.59693 5.63517 5.67357 5.78529 5.86012 5.88348 5.97824 5.99922 6.10427 6.14861 6.21513 6.26800 6.39064 6.41465 6.59299 6.61115 6.66003 6.77792 6.92658 7.06380 7.15146 7.45498 7.75036 7.85929 8.19986 8.48947 9.59663 10.18022 10.52083 11.53351 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014008 B = 0.002590 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.311411 B =10810.246787 C =12259.967778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.180 3.820 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.240 4.240 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C -0.103 4.103 14 H 0.074 0.926 15 C -0.114 4.114 16 C -0.134 4.134 17 C 0.093 3.907 18 N -0.600 5.600 19 C 0.552 3.448 20 O -0.518 6.518 21 C -0.033 4.033 22 C -0.212 4.212 23 C 0.145 3.855 24 N -0.533 5.533 25 C 0.401 3.599 26 N -0.619 5.619 27 C 0.088 3.912 28 C 0.100 3.900 29 C -0.187 4.187 30 C 0.115 3.885 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.142 0.858 43 H 0.161 0.839 44 H 0.083 0.917 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.046 0.954 48 H 0.062 0.938 49 H 0.080 0.920 50 H 0.143 0.857 51 H 0.101 0.899 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.103 -6.084 -25.299 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.367 5.367 5 C -0.371 4.371 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.578 5.578 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.214 1.214 13 C -0.124 4.124 14 H 0.092 0.908 15 C -0.152 4.152 16 C -0.173 4.173 17 C -0.030 4.030 18 N -0.333 5.333 19 C 0.339 3.661 20 O -0.394 6.394 21 C -0.044 4.044 22 C -0.235 4.235 23 C -0.012 4.012 24 N -0.251 5.251 25 C 0.167 3.833 26 N -0.333 5.333 27 C -0.055 4.055 28 C -0.043 4.043 29 C -0.212 4.212 30 C -0.006 4.006 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.160 0.840 43 H 0.178 0.822 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.099 0.901 50 H 0.161 0.839 51 H 0.119 0.881 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.631 -6.789 -25.358 26.258 hybrid contribution -0.007 0.628 1.728 1.838 sum 0.624 -6.161 -23.630 24.428 Atomic orbital electron populations 1.22580 0.99551 1.00869 0.99960 1.20172 0.91805 0.95280 0.85754 0.93318 1.42489 1.78121 1.10810 1.05289 1.19168 1.36728 0.93799 0.87405 0.91323 1.24750 1.02236 0.95952 0.98000 1.69669 1.50629 1.08570 1.28913 0.86304 0.77692 0.78579 0.83799 1.21363 1.21761 1.21372 1.21784 1.01034 0.94185 0.95355 0.90765 1.21616 1.01062 0.98962 0.93587 1.21934 1.01109 0.95371 0.98847 1.22218 1.00672 0.93409 0.86666 1.48044 1.59414 1.17402 1.08407 1.18308 0.78005 0.81460 0.88368 1.90862 1.50774 1.64972 1.32780 1.20104 0.94630 0.95869 0.93799 1.22150 1.02154 1.05289 0.93875 1.22344 0.92139 0.90369 0.96380 1.67001 1.04421 1.21356 1.32342 1.18181 0.86827 0.89151 0.89179 1.46167 1.23365 1.55660 1.08155 1.21834 0.94391 1.00628 0.88620 1.21547 1.01312 0.98625 0.82852 1.21559 0.99866 1.01374 0.98399 1.21915 0.99382 0.94036 0.85235 0.94300 0.93239 0.92880 0.78071 0.93469 0.91465 0.91613 0.90889 0.91619 0.88769 0.91151 0.84015 0.82231 0.89883 0.92225 0.91958 0.93548 0.91883 0.90116 0.83902 0.88091 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 8.76 37.16 0.33 -2.63 16 2 C 0.18 3.51 2.67 -67.93 -0.18 3.33 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 N -0.73 -18.32 5.06 -53.43 -0.27 -18.59 16 5 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 6 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.92 13.06 55.49 0.72 -28.19 16 9 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 C -0.10 -1.69 2.27 -90.50 -0.21 -1.89 16 14 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 15 C -0.11 -1.39 4.89 -26.69 -0.13 -1.52 16 16 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 17 C 0.09 0.94 4.84 -3.71 -0.02 0.92 16 18 N -0.60 -8.54 2.97 -173.77 -0.52 -9.06 16 19 C 0.55 8.91 7.41 -12.18 -0.09 8.82 16 20 O -0.52 -10.71 16.33 5.35 0.09 -10.63 16 21 C -0.03 -0.43 5.27 -104.69 -0.55 -0.98 16 22 C -0.21 -2.10 7.47 -39.02 -0.29 -2.40 16 23 C 0.14 1.33 11.16 -17.62 -0.20 1.13 16 24 N -0.53 -5.98 9.05 -12.48 -0.11 -6.09 16 25 C 0.40 4.71 7.33 -155.08 -1.14 3.58 16 26 N -0.62 -6.05 3.39 -189.69 -0.64 -6.70 16 27 C 0.09 0.69 10.61 59.85 0.63 1.32 16 28 C 0.10 0.75 10.59 59.85 0.63 1.39 16 29 C -0.19 -2.39 8.91 -38.79 -0.35 -2.74 16 30 C 0.12 1.92 5.19 -3.72 -0.02 1.90 16 31 H 0.04 0.55 6.60 -51.93 -0.34 0.21 16 32 H 0.05 0.87 6.23 -51.93 -0.32 0.54 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.38 10.53 6.48 -40.82 -0.26 10.27 16 35 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.07 0.76 6.63 -51.93 -0.34 0.41 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.85 4.52 -51.93 -0.23 0.61 16 41 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 42 H 0.14 1.12 6.25 -52.48 -0.33 0.80 16 43 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.08 0.71 5.36 -51.93 -0.28 0.43 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.36 8.07 -51.93 -0.42 -0.06 16 49 H 0.08 0.67 7.24 -51.93 -0.38 0.29 16 50 H 0.14 1.84 5.87 -52.48 -0.31 1.54 16 51 H 0.10 2.10 5.82 -51.93 -0.30 1.80 16 52 H 0.07 1.15 6.06 -51.93 -0.31 0.84 16 LS Contribution 400.23 15.07 6.03 6.03 Total: -1.00 -34.84 400.23 -9.73 -44.57 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.03 Total: 9.54 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.98 Total: 1.34 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -0.82 Total: -68.63 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.84 -9.73 -44.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482478881.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.458 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds