Wall clock time and date at job start Wed Apr 1 2020 05:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46889 * 2 1 4 4 N 1.46492 * 109.47262 * 120.00224 * 2 1 3 5 5 C 1.36933 * 120.00206 * 274.99730 * 4 2 1 6 6 H 1.08003 * 119.99724 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00378 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99800 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00412 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47235 * 59.99580 * 9 7 5 11 11 H 1.48495 * 109.47367 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46711 * 299.99823 * 9 7 5 13 13 C 1.53007 * 109.46778 * 240.00352 * 2 1 3 14 14 H 1.08998 * 109.52122 * 185.07686 * 13 2 1 15 15 C 1.53044 * 109.49615 * 64.99910 * 13 2 1 16 16 C 1.53043 * 109.53348 * 178.68112 * 15 13 2 17 17 C 1.53196 * 109.31039 * 61.36621 * 16 15 13 18 18 N 1.46922 * 108.77388 * 305.35981 * 17 16 15 19 19 C 1.34780 * 120.62807 * 233.63078 * 18 17 16 20 20 O 1.21519 * 119.99539 * 174.14011 * 19 18 17 21 21 C 1.48161 * 120.00352 * 354.13790 * 19 18 17 22 22 C 1.40020 * 120.88231 * 323.77706 * 21 19 18 23 23 C 1.37938 * 119.17556 * 179.97438 * 22 21 19 24 24 N 1.31923 * 121.00411 * 359.97438 * 23 22 21 25 25 C 1.32313 * 121.94288 * 0.02562 * 24 23 22 26 26 N 1.39024 * 119.64390 * 179.97438 * 25 24 23 27 27 C 1.46501 * 120.00056 * 191.43096 * 26 25 24 28 28 C 1.46497 * 119.99732 * 11.43716 * 26 25 24 29 29 C 1.39125 * 120.70921 * 359.74203 * 25 24 23 30 30 C 1.46921 * 118.74003 * 53.61187 * 18 17 16 31 31 H 1.08996 * 109.47459 * 59.99695 * 1 2 3 32 32 H 1.09005 * 109.47268 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46885 * 299.99517 * 1 2 3 34 34 H 0.97004 * 120.00135 * 95.00109 * 4 2 1 35 35 H 0.97002 * 120.00085 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.45876 * 298.69717 * 15 13 2 37 37 H 1.08999 * 109.46262 * 58.66420 * 15 13 2 38 38 H 1.09004 * 109.49677 * 181.31244 * 16 15 13 39 39 H 1.08998 * 109.50093 * 301.41160 * 16 15 13 40 40 H 1.09004 * 109.57953 * 185.57418 * 17 16 15 41 41 H 1.08997 * 109.70567 * 65.22139 * 17 16 15 42 42 H 1.08003 * 120.40608 * 359.97438 * 22 21 19 43 43 H 1.08000 * 119.49715 * 180.02562 * 23 22 21 44 44 H 1.09004 * 109.47249 * 356.52014 * 27 26 25 45 45 H 1.08994 * 109.47165 * 116.51848 * 27 26 25 46 46 H 1.09002 * 109.46820 * 236.51978 * 27 26 25 47 47 H 1.08996 * 109.47605 * 89.99645 * 28 26 25 48 48 H 1.09004 * 109.46742 * 209.99849 * 28 26 25 49 49 H 1.09004 * 109.47213 * 329.99143 * 28 26 25 50 50 H 1.08007 * 120.52969 * 180.26271 * 29 25 24 51 51 H 1.08994 * 109.59204 * 186.59824 * 30 18 17 52 52 H 1.09000 * 109.58569 * 66.17569 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0076 2.3756 6 1 1.8919 1.0402 2.4243 7 6 2.6124 -0.6618 3.5089 8 7 2.9254 -1.9389 3.4497 9 14 2.7902 0.2698 5.1182 10 1 1.4675 0.8056 5.5288 11 1 3.2993 -0.6486 6.1682 12 1 3.7447 1.3929 4.9371 13 6 2.0399 -0.7212 -1.2494 14 1 3.1261 -0.8011 -1.2060 15 6 1.6353 0.0688 -2.4961 16 6 2.1731 -0.6344 -3.7445 17 6 1.5609 -2.0355 -3.8400 18 7 1.8218 -2.7521 -2.5842 19 6 2.4130 -3.9633 -2.5948 20 8 2.7200 -4.4987 -1.5480 21 6 2.6885 -4.6420 -3.8827 22 6 1.7977 -4.5331 -4.9574 23 6 2.0894 -5.1793 -6.1407 24 7 3.1908 -5.8936 -6.2713 25 6 4.0613 -6.0248 -5.2835 26 7 5.2065 -6.7897 -5.4734 27 6 6.0456 -7.1492 -4.3275 28 6 5.5743 -7.2362 -6.8193 29 6 3.8452 -5.4016 -4.0586 30 6 1.4264 -2.1232 -1.3166 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 2.2490 -1.6318 1.1525 35 1 3.2488 -2.3962 4.2417 36 1 0.5483 0.1271 -2.5521 37 1 2.0503 1.0751 -2.4390 38 1 1.9046 -0.0589 -4.6304 39 1 3.2580 -0.7152 -3.6776 40 1 2.0146 -2.5765 -4.6705 41 1 0.4855 -1.9567 -3.9992 42 1 0.8934 -3.9505 -4.8611 43 1 1.4061 -5.0985 -6.9732 44 1 5.6505 -6.6799 -3.4265 45 1 6.0459 -8.2320 -4.2029 46 1 7.0646 -6.8030 -4.5006 47 1 6.2159 -6.4895 -7.2872 48 1 6.1079 -8.1844 -6.7544 49 1 4.6727 -7.3669 -7.4178 50 1 4.5598 -5.5072 -3.2556 51 1 1.7909 -2.7221 -0.4821 52 1 0.3399 -2.0493 -1.2688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482478881.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:07 Heat of formation + Delta-G solvation = 17.240233 kcal Electronic energy + Delta-G solvation = -31112.374822 eV Core-core repulsion = 27111.994297 eV Total energy + Delta-G solvation = -4000.380525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.99625 -40.76670 -39.16495 -37.53198 -36.94861 -34.80625 -33.66770 -33.18107 -31.72624 -31.20816 -29.47784 -29.12609 -27.19765 -26.30816 -26.16989 -24.82926 -24.33329 -23.08962 -22.22143 -20.90148 -19.98661 -19.26989 -18.66585 -17.99726 -17.30557 -16.94131 -16.76845 -16.64088 -16.33934 -16.09943 -15.87250 -15.51329 -15.34416 -15.26880 -15.05127 -14.83767 -14.50335 -14.30703 -14.07821 -13.94196 -13.91684 -13.40939 -13.38259 -13.16916 -13.02861 -12.96631 -12.80879 -12.68851 -12.54854 -12.32921 -12.14274 -11.92918 -11.80222 -11.74081 -11.47750 -11.32444 -11.20289 -10.93803 -10.85034 -10.81827 -10.41128 -9.65725 -9.00829 -8.54975 -7.92308 -5.21829 -0.19309 0.26864 1.44055 1.48044 1.54182 1.60077 1.84822 2.01018 2.55926 2.84095 3.25485 3.40094 3.56537 3.72850 3.87292 3.90361 3.93406 4.04067 4.05108 4.14669 4.16262 4.29006 4.35274 4.39587 4.46110 4.48977 4.59413 4.63015 4.65342 4.71655 4.75396 4.77946 4.82951 4.85141 4.88549 4.91376 4.98829 5.09536 5.10901 5.14169 5.17652 5.25659 5.37448 5.43746 5.46800 5.52404 5.55621 5.69950 5.93064 6.28281 6.28794 6.31882 6.99051 7.05857 7.33388 8.12458 8.33474 9.31035 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014008 B = 0.002590 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.311411 B =10810.246787 C =12259.967778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 H 0.047 0.953 4 N -0.742 5.742 5 C -0.236 4.236 6 H 0.079 0.921 7 C -0.083 4.083 8 N -0.974 5.974 9 Si 0.974 3.026 10 H -0.276 1.276 11 H -0.299 1.299 12 H -0.277 1.277 13 C -0.092 4.092 14 H 0.039 0.961 15 C -0.108 4.108 16 C -0.129 4.129 17 C 0.086 3.914 18 N -0.594 5.594 19 C 0.544 3.456 20 O -0.583 6.583 21 C -0.047 4.047 22 C -0.202 4.202 23 C 0.155 3.845 24 N -0.541 5.541 25 C 0.394 3.606 26 N -0.624 5.624 27 C 0.085 3.915 28 C 0.099 3.901 29 C -0.211 4.211 30 C 0.123 3.877 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.033 0.967 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.047 0.953 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.170 0.830 43 H 0.204 0.796 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.051 0.949 48 H 0.083 0.917 49 H 0.075 0.925 50 H 0.126 0.874 51 H 0.046 0.954 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 -4.423 -29.129 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.063 3.937 3 H 0.065 0.935 4 N -0.382 5.382 5 C -0.368 4.368 6 H 0.096 0.904 7 C -0.275 4.275 8 N -0.625 5.625 9 Si 0.803 3.197 10 H -0.202 1.202 11 H -0.226 1.226 12 H -0.203 1.203 13 C -0.112 4.112 14 H 0.057 0.943 15 C -0.145 4.145 16 C -0.167 4.167 17 C -0.035 4.035 18 N -0.325 5.325 19 C 0.333 3.667 20 O -0.464 6.464 21 C -0.058 4.058 22 C -0.225 4.225 23 C -0.002 4.002 24 N -0.259 5.259 25 C 0.159 3.841 26 N -0.338 5.338 27 C -0.057 4.057 28 C -0.043 4.043 29 C -0.236 4.236 30 C 0.001 3.999 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.129 0.871 41 H 0.123 0.877 42 H 0.187 0.813 43 H 0.221 0.779 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.093 0.907 50 H 0.144 0.856 51 H 0.065 0.935 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.205 -5.061 -29.270 29.729 hybrid contribution 0.555 0.136 2.795 2.853 sum -0.650 -4.925 -26.474 26.936 Atomic orbital electron populations 1.22399 0.97124 1.00940 1.01205 1.20485 0.93367 0.94825 0.84973 0.93518 1.42779 1.78525 1.10297 1.06605 1.19625 1.34589 0.94212 0.88355 0.90356 1.25624 1.03260 0.96848 1.01740 1.69872 1.52836 1.10469 1.29345 0.85200 0.78046 0.77192 0.79277 1.20157 1.22588 1.20312 1.21607 0.98700 0.94482 0.96383 0.94262 1.21610 1.02523 0.98587 0.91817 1.21943 0.99957 0.95525 0.99302 1.22647 1.03027 0.93036 0.84768 1.48141 1.58269 1.16941 1.09154 1.18929 0.77129 0.81798 0.88859 1.90824 1.53533 1.66727 1.35279 1.19944 0.95947 0.96676 0.93182 1.22395 1.02054 1.05229 0.92798 1.23077 0.91664 0.88371 0.97087 1.67140 1.04991 1.21845 1.31909 1.18283 0.87678 0.89326 0.88794 1.46444 1.22945 1.55051 1.09366 1.21924 0.94757 1.01357 0.87701 1.21658 1.01314 0.99735 0.81609 1.21520 1.00277 1.02904 0.98939 1.21623 0.99847 0.93375 0.85055 0.89783 0.93735 0.94797 0.79948 0.94309 0.89187 0.90855 0.86735 0.93437 0.87100 0.87682 0.81295 0.77912 0.91524 0.90852 0.90434 0.93030 0.89862 0.90655 0.85614 0.93527 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 8.76 71.98 0.63 -4.61 16 2 C 0.17 6.73 2.67 44.99 0.12 6.85 16 3 H 0.05 1.84 8.08 -2.38 -0.02 1.82 16 4 N -0.74 -39.18 5.06 -322.95 -1.63 -40.81 16 5 C -0.24 -13.58 9.93 84.03 0.83 -12.74 16 6 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 7 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 8 N -0.97 -63.77 13.06 21.65 0.28 -63.49 16 9 Si 0.97 48.13 29.55 68.60 2.03 50.16 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 C -0.09 -3.01 2.27 -10.71 -0.02 -3.04 16 14 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 15 C -0.11 -2.28 4.89 30.62 0.15 -2.13 16 16 C -0.13 -2.15 6.08 30.67 0.19 -1.97 16 17 C 0.09 1.44 4.84 86.36 0.42 1.85 16 18 N -0.59 -16.88 2.97 -821.98 -2.44 -19.32 16 19 C 0.54 18.54 7.41 86.88 0.64 19.19 16 20 O -0.58 -26.69 16.33 -3.77 -0.06 -26.76 16 21 C -0.05 -1.22 5.27 -19.91 -0.10 -1.33 16 22 C -0.20 -3.46 7.47 22.63 0.17 -3.29 16 23 C 0.16 2.31 11.16 84.61 0.94 3.25 16 24 N -0.54 -11.00 9.05 -193.41 -1.75 -12.75 16 25 C 0.39 9.13 7.33 133.08 0.98 10.11 16 26 N -0.62 -11.95 3.39 -754.04 -2.56 -14.51 16 27 C 0.09 1.36 10.61 127.77 1.36 2.71 16 28 C 0.10 1.35 10.59 127.77 1.35 2.70 16 29 C -0.21 -5.69 8.91 22.79 0.20 -5.49 16 30 C 0.12 4.23 5.19 86.36 0.45 4.68 16 31 H 0.08 2.04 6.60 -2.39 -0.02 2.03 16 32 H 0.04 1.52 6.23 -2.38 -0.01 1.51 16 33 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.37 21.71 6.48 -92.71 -0.60 21.11 16 35 H 0.25 15.84 8.31 -92.71 -0.77 15.07 16 36 H 0.09 1.55 6.63 -2.39 -0.02 1.53 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.11 1.56 4.52 -2.38 -0.01 1.55 16 41 H 0.11 1.15 8.08 -2.39 -0.02 1.13 16 42 H 0.17 1.90 6.25 -2.91 -0.02 1.89 16 43 H 0.20 1.21 8.06 -2.91 -0.02 1.18 16 44 H 0.07 1.29 5.36 -2.38 -0.01 1.28 16 45 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.08 0.78 8.07 -2.38 -0.02 0.76 16 49 H 0.07 1.12 7.24 -2.38 -0.02 1.10 16 50 H 0.13 3.71 5.87 -2.91 -0.02 3.69 16 51 H 0.05 2.13 5.82 -2.39 -0.01 2.12 16 52 H 0.09 2.75 6.06 -2.39 -0.01 2.74 16 Total: -1.00 -83.68 400.23 2.98 -80.71 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: 0.34 Total: 34.55 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 8.77 Total: 12.21 kcal Atomic # 7 Polarization: -142.78 SS G_CDS: -8.10 Total: -150.88 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.06 Total: -26.76 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -83.68 2.98 -80.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482478881.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.949 kcal (2) G-P(sol) polarization free energy of solvation -83.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds