Wall clock time and date at job start Wed Apr 1 2020 05:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47342 * 2 1 4 4 N 1.46501 * 109.47533 * 239.99520 * 2 1 3 5 5 C 1.36927 * 120.00169 * 84.99960 * 4 2 1 6 6 H 1.08001 * 119.99819 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00264 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00031 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00244 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47159 * 59.99725 * 9 7 5 11 11 H 1.48500 * 109.47375 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46763 * 300.00022 * 9 7 5 13 13 C 1.53002 * 109.47128 * 119.99355 * 2 1 3 14 14 H 1.09001 * 110.88689 * 57.57488 * 13 2 1 15 15 C 1.55160 * 111.00746 * 181.45524 * 13 2 1 16 16 C 1.54323 * 102.94243 * 153.57720 * 15 13 2 17 17 N 1.47025 * 107.27046 * 337.80793 * 16 15 13 18 18 C 1.34783 * 125.64634 * 178.90446 * 17 16 15 19 19 O 1.21626 * 119.99872 * 185.24808 * 18 17 16 20 20 C 1.47163 * 120.00006 * 5.25369 * 18 17 16 21 21 C 1.38402 * 126.88969 * 92.96641 * 20 18 17 22 22 C 1.50703 * 127.31663 * 359.96891 * 21 20 18 23 23 C 1.53783 * 113.61208 * 119.99435 * 22 21 20 24 24 C 1.53782 * 87.07821 * 139.98204 * 23 22 21 25 25 C 1.53779 * 87.17537 * 334.52693 * 24 23 22 26 26 C 1.39665 * 105.36132 * 180.22576 * 21 20 18 27 27 N 1.30860 * 107.86288 * 359.56976 * 26 21 20 28 28 N 1.28442 * 110.92520 * 0.45555 * 27 26 21 29 29 C 1.46501 * 125.18726 * 179.73230 * 28 27 26 30 30 C 1.47414 * 108.70490 * 359.16765 * 17 16 15 31 31 H 1.08999 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47057 * 300.00844 * 1 2 3 33 33 H 1.09002 * 109.46880 * 60.00202 * 1 2 3 34 34 H 0.97004 * 119.99706 * 265.00542 * 4 2 1 35 35 H 0.97002 * 120.00365 * 180.02562 * 8 7 5 36 36 H 1.08990 * 110.71735 * 35.21449 * 15 13 2 37 37 H 1.09000 * 110.87168 * 272.01022 * 15 13 2 38 38 H 1.08994 * 109.88169 * 218.38703 * 16 15 13 39 39 H 1.09000 * 110.01049 * 97.29681 * 16 15 13 40 40 H 1.08999 * 112.90955 * 348.74882 * 22 21 20 41 41 H 1.08998 * 113.61577 * 25.43631 * 23 22 21 42 42 H 1.08998 * 113.69291 * 254.54148 * 23 22 21 43 43 H 1.08999 * 113.61665 * 89.11435 * 24 23 22 44 44 H 1.09006 * 113.61521 * 219.93494 * 24 23 22 45 45 H 1.09000 * 113.62000 * 140.02539 * 25 24 23 46 46 H 1.09008 * 113.61231 * 270.92982 * 25 24 23 47 47 H 1.08002 * 126.07044 * 179.72303 * 26 21 20 48 48 H 1.08995 * 109.47289 * 274.72140 * 29 28 27 49 49 H 1.09000 * 109.47499 * 34.72658 * 29 28 27 50 50 H 1.09007 * 109.47059 * 154.72009 * 29 28 27 51 51 H 1.08995 * 110.37011 * 142.74091 * 30 17 16 52 52 H 1.08998 * 110.36842 * 265.06516 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0077 -2.3757 6 1 1.8927 1.0402 -2.4242 7 6 2.6115 -0.6623 -3.5091 8 7 2.9236 -1.9395 -3.4501 9 14 2.7907 0.2696 -5.1181 10 1 3.7466 1.3914 -4.9367 11 1 3.2984 -0.6492 -6.1685 12 1 1.4686 0.8074 -5.5285 13 6 2.0400 -0.7211 1.2493 14 1 1.6547 -1.7398 1.2946 15 6 3.5906 -0.7101 1.3039 16 6 3.8840 -0.8147 2.8153 17 7 2.6858 -0.3451 3.5261 18 6 2.5335 -0.3002 4.8646 19 8 1.4621 0.0179 5.3444 20 6 3.6637 -0.6358 5.7454 21 6 4.5834 0.2442 6.2887 22 6 4.6378 1.7388 6.1031 23 6 4.5117 2.5276 7.4171 24 6 5.5881 3.4744 6.8604 25 6 6.0702 2.2959 5.9980 26 6 5.4539 -0.5479 7.0407 27 7 5.0535 -1.7898 6.9415 28 7 4.0148 -1.8784 6.1911 29 6 3.3134 -3.1222 5.8636 30 6 1.6761 0.0626 2.5325 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6319 -1.1524 35 1 3.2471 -2.3969 -4.2421 36 1 3.9841 0.2218 0.8983 37 1 4.0040 -1.5662 0.7706 38 1 4.7371 -0.1866 3.0716 39 1 4.0923 -1.8503 3.0841 40 1 3.9727 2.0930 5.3156 41 1 4.8343 1.9680 8.2951 42 1 3.5398 3.0024 7.5514 43 1 5.1828 4.3031 6.2798 44 1 6.3151 3.7957 7.6063 45 1 6.3553 2.5833 4.9859 46 1 6.8181 1.6730 6.4887 47 1 6.3048 -0.1975 7.6060 48 1 3.7969 -3.5982 5.0106 49 1 3.3458 -3.7942 6.7212 50 1 2.2756 -2.8996 5.6155 51 1 0.6771 -0.2094 2.8731 52 1 1.7361 1.1353 2.3487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484337037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:35 Heat of formation + Delta-G solvation = 74.337042 kcal Electronic energy + Delta-G solvation = -31257.434398 eV Core-core repulsion = 27259.529776 eV Total energy + Delta-G solvation = -3997.904622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.75466 -39.95007 -38.77504 -37.82729 -35.28342 -33.55139 -32.58419 -31.43882 -30.39185 -29.31918 -27.83333 -27.43568 -25.77847 -25.59181 -24.75697 -23.53335 -21.82848 -21.58320 -21.46343 -19.71623 -19.31484 -19.25378 -17.93399 -17.14069 -16.74265 -16.05731 -15.95656 -15.84276 -15.35577 -15.03508 -14.65494 -14.36067 -13.89573 -13.66259 -13.56779 -13.26744 -13.21564 -13.15965 -12.86983 -12.66648 -12.63917 -12.60942 -12.47730 -12.41565 -12.16936 -11.78471 -11.27950 -11.10955 -10.92126 -10.79039 -10.76537 -10.67790 -10.65536 -10.50423 -10.47579 -10.28518 -10.25789 -9.92313 -9.68260 -9.32931 -8.95817 -8.81624 -8.77339 -7.01757 -5.81404 -3.10041 1.48633 1.91820 2.45050 2.54297 2.92906 3.40667 3.45859 3.46154 4.14005 4.21305 4.41873 4.52718 4.53977 4.60137 4.71932 4.78771 4.80545 4.83266 4.92805 5.02337 5.06698 5.10052 5.23025 5.27784 5.40895 5.43720 5.49594 5.54715 5.57107 5.60633 5.67844 5.73749 5.80435 5.80921 5.82563 5.89664 5.98504 6.06614 6.09575 6.15985 6.29055 6.31925 6.32969 6.37658 6.52242 6.54429 6.57941 6.81137 7.04081 7.29595 7.65572 7.85962 7.88259 8.37023 9.48623 10.04944 10.39918 11.41106 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.002538 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.565081 B =11030.233631 C =11602.142199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.186 3.814 3 H 0.050 0.950 4 N -0.721 5.721 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.114 4.114 16 C 0.100 3.900 17 N -0.602 5.602 18 C 0.604 3.396 19 O -0.526 6.526 20 C -0.017 4.017 21 C -0.142 4.142 22 C -0.038 4.038 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.129 4.129 26 C 0.009 3.991 27 N -0.284 5.284 28 N -0.274 5.274 29 C 0.087 3.913 30 C 0.113 3.887 31 H 0.046 0.954 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.084 0.916 47 H 0.183 0.817 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.080 0.920 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.942 3.248 21.907 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.369 4.369 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.151 4.151 16 C -0.023 4.023 17 N -0.335 5.335 18 C 0.389 3.611 19 O -0.401 6.401 20 C -0.146 4.146 21 C -0.153 4.153 22 C -0.057 4.057 23 C -0.166 4.166 24 C -0.180 4.180 25 C -0.167 4.167 26 C -0.168 4.168 27 N -0.115 5.115 28 N -0.061 5.061 29 C -0.054 4.054 30 C -0.009 4.009 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.200 0.800 48 H 0.106 0.894 49 H 0.117 0.883 50 H 0.111 0.889 51 H 0.099 0.901 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.530 2.279 22.399 22.966 hybrid contribution -0.010 0.742 -1.253 1.456 sum 4.520 3.020 21.146 21.833 Atomic orbital electron populations 1.22494 0.99188 1.00980 1.00135 1.20121 0.91819 0.95169 0.85350 0.93214 1.42345 1.78183 1.10636 1.05104 1.19163 1.36595 0.93828 0.87279 0.91269 1.24710 1.02172 0.95938 0.97983 1.69638 1.50897 1.08624 1.29012 0.86302 0.77793 0.78627 0.83663 1.21273 1.21749 1.21319 1.22640 0.95363 1.00091 0.94074 0.90092 1.22567 0.96173 1.04491 0.91914 1.22190 0.87416 0.99010 0.93701 1.48524 1.17885 1.62844 1.04235 1.16616 0.85783 0.78316 0.80420 1.90849 1.26277 1.48292 1.74688 1.21290 1.00943 0.86705 1.05662 1.20442 0.96443 0.95647 1.02775 1.20896 0.98244 0.87762 0.98829 1.22944 0.99476 0.97398 0.96813 1.22828 0.98713 0.96923 0.99570 1.23007 0.95785 0.97249 1.00648 1.23289 1.01969 0.88115 1.03453 1.73139 1.01821 1.23231 1.13265 1.45503 1.20306 1.06271 1.34067 1.22192 0.96948 0.82807 1.03442 1.22369 0.91964 0.99510 0.87064 0.93449 0.94379 0.92660 0.78300 0.93482 0.89955 0.89335 0.91299 0.92063 0.88947 0.89905 0.91383 0.90141 0.91345 0.91198 0.89784 0.80037 0.89403 0.88296 0.88941 0.90149 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 9.34 37.16 0.35 -2.49 16 2 C 0.19 3.32 2.41 -67.93 -0.16 3.16 16 3 H 0.05 0.91 8.04 -51.93 -0.42 0.50 16 4 N -0.72 -16.58 4.82 -53.43 -0.26 -16.83 16 5 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 6 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 9 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 C -0.10 -1.48 2.61 -88.58 -0.23 -1.71 16 14 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.11 -1.57 6.13 -24.90 -0.15 -1.72 16 16 C 0.10 1.19 6.48 -3.06 -0.02 1.17 16 17 N -0.60 -7.87 3.33 -172.03 -0.57 -8.44 16 18 C 0.60 8.62 6.70 -12.63 -0.08 8.54 16 19 O -0.53 -9.13 17.34 5.25 0.09 -9.04 16 20 C -0.02 -0.23 5.90 -82.06 -0.48 -0.71 16 21 C -0.14 -1.65 5.49 -104.03 -0.57 -2.22 16 22 C -0.04 -0.38 4.12 -90.81 -0.37 -0.76 16 23 C -0.13 -1.12 7.63 -25.92 -0.20 -1.32 16 24 C -0.14 -1.05 8.07 -25.92 -0.21 -1.26 16 25 C -0.13 -1.05 7.60 -25.78 -0.20 -1.24 16 26 C 0.01 0.10 11.26 -17.43 -0.20 -0.10 16 27 N -0.28 -3.44 11.90 30.59 0.36 -3.07 16 28 N -0.27 -3.22 3.75 -63.88 -0.24 -3.46 16 29 C 0.09 0.73 11.21 59.85 0.67 1.40 16 30 C 0.11 1.52 5.58 -2.65 -0.01 1.50 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.54 7.46 -51.93 -0.39 0.15 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.38 9.40 7.80 -40.82 -0.32 9.08 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.08 1.21 8.04 -51.93 -0.42 0.80 16 37 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.06 7.95 -51.93 -0.41 0.64 16 41 H 0.08 0.68 8.04 -51.93 -0.42 0.27 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.61 7.19 -51.92 -0.37 0.23 16 47 H 0.18 1.41 7.67 -52.49 -0.40 1.01 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.09 0.79 7.66 -51.93 -0.40 0.39 16 51 H 0.08 1.10 7.92 -51.93 -0.41 0.69 16 52 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 LS Contribution 420.61 15.07 6.34 6.34 Total: -1.00 -31.64 420.61 -9.69 -41.33 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -8.99 Total: 7.36 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -2.12 Total: -4.56 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.02 Total: -58.10 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -31.64 -9.69 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484337037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.668 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds