Wall clock time and date at job start Wed Apr 1 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46863 * 2 1 4 4 N 1.46503 * 109.46931 * 240.00145 * 2 1 3 5 5 C 1.36929 * 120.00227 * 85.00110 * 4 2 1 6 6 H 1.08008 * 120.00081 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00493 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00651 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99347 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47342 * 90.00246 * 9 7 5 11 11 H 1.48503 * 109.46765 * 209.99832 * 9 7 5 12 12 H 1.48498 * 109.47537 * 329.99839 * 9 7 5 13 13 C 1.53002 * 109.47187 * 120.00032 * 2 1 3 14 14 H 1.09000 * 110.88398 * 57.57472 * 13 2 1 15 15 C 1.55552 * 110.99828 * 293.66709 * 13 2 1 16 16 C 1.54325 * 102.75696 * 206.38810 * 15 13 2 17 17 N 1.47018 * 107.40412 * 22.23822 * 16 15 13 18 18 C 1.34776 * 125.65214 * 181.01647 * 17 16 15 19 19 O 1.21599 * 120.00515 * 179.97438 * 18 17 16 20 20 C 1.47432 * 119.99665 * 359.97438 * 18 17 16 21 21 C 1.38046 * 126.41529 * 0.02562 * 20 18 17 22 22 N 1.34258 * 107.42106 * 179.97438 * 21 20 18 23 23 C 1.46491 * 125.75774 * 179.97438 * 22 21 20 24 24 N 1.39937 * 108.48728 * 0.02562 * 22 21 20 25 25 C 1.30451 * 108.89921 * 359.73288 * 24 22 21 26 26 C 1.50698 * 125.99054 * 180.26696 * 25 24 22 27 27 C 1.53784 * 113.61253 * 37.66763 * 26 25 24 28 28 C 1.53783 * 87.08049 * 220.02119 * 27 26 25 29 29 C 1.53778 * 113.61286 * 300.17208 * 26 25 24 30 30 C 1.47430 * 108.70532 * 0.98338 * 17 16 15 31 31 H 1.09000 * 109.47079 * 299.99923 * 1 2 3 32 32 H 1.08993 * 109.47389 * 60.00089 * 1 2 3 33 33 H 1.09005 * 109.47430 * 180.02562 * 1 2 3 34 34 H 0.97004 * 119.99825 * 264.99767 * 4 2 1 35 35 H 0.96991 * 120.00258 * 180.02562 * 8 7 5 36 36 H 1.08993 * 110.83076 * 88.07022 * 15 13 2 37 37 H 1.09000 * 110.77660 * 324.67587 * 15 13 2 38 38 H 1.09002 * 109.88192 * 262.74262 * 16 15 13 39 39 H 1.09000 * 109.88128 * 141.73114 * 16 15 13 40 40 H 1.08005 * 126.28924 * 359.96470 * 21 20 18 41 41 H 1.09000 * 109.47473 * 89.99914 * 23 22 21 42 42 H 1.09001 * 109.47683 * 210.00609 * 23 22 21 43 43 H 1.09007 * 109.47012 * 330.00487 * 23 22 21 44 44 H 1.08998 * 112.85190 * 168.97206 * 26 25 24 45 45 H 1.09005 * 113.61779 * 334.56320 * 27 26 25 46 46 H 1.08996 * 113.61460 * 105.47501 * 27 26 25 47 47 H 1.09004 * 113.61350 * 270.88932 * 28 27 26 48 48 H 1.09001 * 113.69552 * 139.99067 * 28 27 26 49 49 H 1.09003 * 113.61244 * 254.52968 * 29 26 25 50 50 H 1.09003 * 113.61790 * 25.34406 * 29 26 25 51 51 H 1.08997 * 110.36526 * 94.70985 * 30 17 16 52 52 H 1.08992 * 110.36633 * 216.92450 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3757 6 1 1.8918 1.0404 -2.4244 7 6 2.6122 -0.6617 -3.5091 8 7 2.7375 -0.0053 -4.6430 9 14 3.0578 -2.4738 -3.4248 10 1 1.8612 -3.2932 -3.7441 11 1 4.1334 -2.7652 -4.4063 12 1 3.5330 -2.8037 -2.0571 13 6 2.0400 -0.7213 1.2492 14 1 1.6547 -1.7399 1.2943 15 6 1.6762 0.0707 2.5377 16 6 2.7766 -0.3654 3.5279 17 7 3.9165 -0.8474 2.7342 18 6 5.0702 -1.3347 3.2320 19 8 5.9487 -1.7068 2.4781 20 6 5.2673 -1.4166 4.6908 21 6 4.3642 -1.0345 5.6625 22 7 4.9319 -1.2738 6.8553 23 6 4.3213 -1.0145 8.1614 24 7 6.2058 -1.8116 6.6406 25 6 6.4136 -1.9059 5.3562 26 6 7.6592 -2.4403 4.6975 27 6 8.2805 -3.6383 5.4349 28 6 9.6524 -3.0144 5.1294 29 6 8.9321 -1.6574 5.0602 30 6 3.5881 -0.7103 1.3035 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 2.2490 -1.6318 -1.1527 35 1 3.0608 -0.4625 -5.4349 36 1 0.6911 -0.2173 2.9045 37 1 1.7231 1.1447 2.3576 38 1 2.4044 -1.1666 4.1665 39 1 3.0830 0.4835 4.1390 40 1 3.3815 -0.6192 5.4940 41 1 3.7694 -1.8967 8.4861 42 1 5.1009 -0.7858 8.8881 43 1 3.6390 -0.1681 8.0819 44 1 7.5359 -2.6013 3.6265 45 1 8.0416 -3.6684 6.4980 46 1 8.1139 -4.5926 4.9354 47 1 10.0748 -3.3335 4.1765 48 1 10.3617 -3.0907 5.9536 49 1 9.2916 -1.0126 4.2583 50 1 8.8708 -1.1447 6.0202 51 1 3.9747 0.2316 0.9142 52 1 3.9951 -1.5489 0.7388 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484344895.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:07 Heat of formation + Delta-G solvation = 83.723242 kcal Electronic energy + Delta-G solvation = -30985.842047 eV Core-core repulsion = 26988.344441 eV Total energy + Delta-G solvation = -3997.497606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.76654 -39.69206 -38.59404 -37.61969 -35.36227 -33.55044 -32.55215 -31.14744 -30.44834 -28.94983 -28.34989 -27.98790 -25.68511 -25.48523 -23.90646 -23.77110 -21.81052 -21.52742 -20.83824 -19.85412 -19.62053 -18.88003 -17.64149 -17.08892 -16.52382 -16.11625 -15.78499 -15.60635 -15.34728 -15.03257 -14.81700 -14.18696 -14.12403 -13.72657 -13.52951 -13.33037 -13.32423 -12.93633 -12.69825 -12.59208 -12.54539 -12.52693 -12.29425 -12.20045 -12.15181 -11.74787 -11.63987 -11.21442 -11.01423 -10.85949 -10.82396 -10.61873 -10.59219 -10.55222 -10.44110 -10.24065 -9.95300 -9.62267 -9.54959 -9.51443 -8.91632 -8.88128 -8.49221 -7.25499 -5.74039 -3.09764 1.29915 1.99290 2.05406 3.09325 3.42400 3.44899 3.46637 3.50880 4.02425 4.27812 4.47749 4.52679 4.54762 4.59620 4.62202 4.63304 4.67500 4.82409 4.88289 4.90407 4.94752 5.04836 5.16688 5.24564 5.30918 5.32522 5.49320 5.56106 5.59159 5.66356 5.66629 5.76353 5.78609 5.80490 5.81631 5.88991 5.96090 6.07111 6.10145 6.21978 6.23820 6.28186 6.35046 6.40509 6.44357 6.50059 6.58006 6.77145 6.98247 7.37596 7.65252 8.01062 8.35012 8.44853 9.23096 9.95949 10.14911 11.44292 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012230 B = 0.002844 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.852054 B = 9844.213603 C =11694.742012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 H 0.058 0.942 4 N -0.749 5.749 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.934 5.934 9 Si 0.881 3.119 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.275 1.275 13 C -0.106 4.106 14 H 0.080 0.920 15 C -0.124 4.124 16 C 0.094 3.906 17 N -0.616 5.616 18 C 0.605 3.395 19 O -0.538 6.538 20 C -0.277 4.277 21 C 0.083 3.917 22 N -0.365 5.365 23 C 0.098 3.902 24 N -0.299 5.299 25 C 0.147 3.853 26 C -0.044 4.044 27 C -0.129 4.129 28 C -0.140 4.140 29 C -0.125 4.125 30 C 0.120 3.880 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.045 0.955 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.192 0.808 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.071 0.929 50 H 0.080 0.920 51 H 0.075 0.925 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.284 -1.968 29.631 29.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.080 3.920 3 H 0.076 0.924 4 N -0.391 5.391 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.712 3.288 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.201 1.201 13 C -0.126 4.126 14 H 0.098 0.902 15 C -0.162 4.162 16 C -0.029 4.029 17 N -0.350 5.350 18 C 0.395 3.605 19 O -0.416 6.416 20 C -0.292 4.292 21 C -0.067 4.067 22 N -0.143 5.143 23 C -0.043 4.043 24 N -0.120 5.120 25 C -0.021 4.021 26 C -0.064 4.064 27 C -0.167 4.167 28 C -0.177 4.177 29 C -0.164 4.164 30 C -0.001 4.001 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.194 0.806 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.209 0.791 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.149 0.851 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.099 0.901 51 H 0.094 0.906 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.251 -2.175 30.404 30.655 hybrid contribution -0.390 -1.057 -0.734 1.345 sum 2.861 -3.233 29.670 29.982 Atomic orbital electron populations 1.22408 0.98602 1.00888 1.00503 1.20126 0.92051 0.95457 0.84357 0.92423 1.42787 1.79724 1.09511 1.07116 1.19027 1.37050 0.95555 0.85516 0.89220 1.24647 1.01319 0.97425 0.95577 1.69691 1.52655 1.35590 1.00268 0.86595 0.78068 0.86884 0.77289 1.21230 1.21756 1.20124 1.22793 0.94291 1.00232 0.95327 0.90170 1.22757 0.97503 1.01256 0.94686 1.22308 0.87368 0.98147 0.95103 1.48363 1.15086 1.63120 1.08464 1.16866 0.80655 0.76859 0.86129 1.90739 1.41613 1.49573 1.59675 1.20253 0.97388 1.17946 0.93644 1.23850 0.99543 0.98416 0.84941 1.48323 1.12300 1.47542 1.06171 1.21961 0.98735 1.02510 0.81098 1.77085 0.96585 1.21121 1.17192 1.22218 0.95274 0.95028 0.89559 1.21425 0.87423 0.96417 1.01113 1.22949 0.95788 0.97157 1.00838 1.22797 0.96399 0.96537 1.02002 1.22896 0.94845 0.96685 1.01925 1.22254 0.94833 1.03171 0.79858 0.94114 0.92270 0.93633 0.80647 0.93081 0.89902 0.89994 0.91606 0.91528 0.79102 0.90305 0.88937 0.89116 0.85071 0.89690 0.91305 0.89864 0.91386 0.91009 0.90127 0.90649 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.34 37.16 0.35 -2.24 16 2 C 0.19 3.32 2.41 -67.93 -0.16 3.15 16 3 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 4 N -0.75 -16.98 4.62 -53.42 -0.25 -17.22 16 5 C -0.24 -6.66 10.41 -15.06 -0.16 -6.81 16 6 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 8 N -0.93 -29.40 13.97 55.49 0.78 -28.62 16 9 Si 0.88 22.45 27.73 -169.99 -4.71 17.73 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 12 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 13 C -0.11 -1.50 2.63 -88.25 -0.23 -1.73 16 14 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 15 C -0.12 -1.21 5.62 -24.68 -0.14 -1.35 16 16 C 0.09 0.88 4.98 -3.07 -0.02 0.87 16 17 N -0.62 -8.64 3.33 -171.79 -0.57 -9.21 16 18 C 0.61 9.63 7.85 -12.52 -0.10 9.53 16 19 O -0.54 -10.45 14.96 5.28 0.08 -10.38 16 20 C -0.28 -3.70 6.10 -105.07 -0.64 -4.34 16 21 C 0.08 0.80 9.97 -16.56 -0.17 0.63 16 22 N -0.37 -3.40 3.98 -67.60 -0.27 -3.67 16 23 C 0.10 0.42 11.44 59.84 0.68 1.10 16 24 N -0.30 -3.66 12.09 33.89 0.41 -3.25 16 25 C 0.15 1.97 6.32 -82.02 -0.52 1.45 16 26 C -0.04 -0.56 3.96 -90.96 -0.36 -0.92 16 27 C -0.13 -1.37 7.62 -25.92 -0.20 -1.57 16 28 C -0.14 -1.31 8.08 -25.92 -0.21 -1.52 16 29 C -0.13 -1.37 7.63 -25.92 -0.20 -1.57 16 30 C 0.12 1.96 6.09 -2.53 -0.02 1.94 16 31 H 0.04 0.50 7.51 -51.93 -0.39 0.11 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.36 8.23 5.66 -40.82 -0.23 8.00 16 35 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 38 H 0.07 0.50 6.84 -51.93 -0.36 0.14 16 39 H 0.07 0.50 7.00 -51.93 -0.36 0.13 16 40 H 0.19 1.17 4.42 -52.48 -0.23 0.94 16 41 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.13 1.95 6.03 -51.93 -0.31 1.64 16 45 H 0.08 0.91 7.77 -51.93 -0.40 0.50 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 51 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 52 H 0.08 1.53 8.03 -51.93 -0.42 1.11 16 LS Contribution 408.75 15.07 6.16 6.16 Total: -1.00 -35.81 408.75 -9.17 -44.98 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -8.62 Total: 6.76 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.17 Total: -3.29 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: 0.10 Total: -61.98 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.73 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.81 -9.17 -44.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484344895.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.707 kcal (2) G-P(sol) polarization free energy of solvation -35.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds