Wall clock time and date at job start Wed Apr 1 2020 05:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47554 * 2 1 4 4 N 1.46506 * 109.47306 * 120.00135 * 2 1 3 5 5 C 1.36937 * 119.99916 * 275.00237 * 4 2 1 6 6 H 1.07999 * 120.00023 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99992 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99852 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00037 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47210 * 59.99859 * 9 7 5 11 11 H 1.48494 * 109.47085 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47152 * 299.99959 * 9 7 5 13 13 C 1.53005 * 109.47095 * 239.99890 * 2 1 3 14 14 H 1.08998 * 110.88507 * 302.43148 * 13 2 1 15 15 C 1.55158 * 111.00391 * 66.35068 * 13 2 1 16 16 C 1.54324 * 103.01845 * 153.38226 * 15 13 2 17 17 N 1.47022 * 107.27092 * 338.14111 * 16 15 13 18 18 C 1.34773 * 125.65060 * 178.84944 * 17 16 15 19 19 O 1.21603 * 119.99813 * 179.69171 * 18 17 16 20 20 C 1.47428 * 119.99907 * 359.69545 * 18 17 16 21 21 C 1.38037 * 126.41684 * 359.95336 * 20 18 17 22 22 N 1.34257 * 107.42081 * 180.02562 * 21 20 18 23 23 C 1.46501 * 125.75897 * 179.97438 * 22 21 20 24 24 N 1.39940 * 108.48782 * 0.02562 * 22 21 20 25 25 C 1.30444 * 108.89995 * 359.97438 * 24 22 21 26 26 C 1.50697 * 125.98794 * 180.26723 * 25 24 22 27 27 C 1.53778 * 113.61728 * 38.83150 * 26 25 24 28 28 C 1.53956 * 87.01748 * 220.04636 * 27 26 25 29 29 C 1.53778 * 113.61358 * 301.21804 * 26 25 24 30 30 C 1.47424 * 108.69778 * 358.58620 * 17 16 15 31 31 H 1.08994 * 109.47001 * 59.99696 * 1 2 3 32 32 H 1.08995 * 109.46841 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46549 * 300.00271 * 1 2 3 34 34 H 0.97000 * 119.99721 * 94.99433 * 4 2 1 35 35 H 0.97002 * 120.00318 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.72193 * 271.94562 * 15 13 2 37 37 H 1.08997 * 110.71701 * 35.03587 * 15 13 2 38 38 H 1.09007 * 109.98973 * 218.66402 * 16 15 13 39 39 H 1.08998 * 109.78255 * 97.50041 * 16 15 13 40 40 H 1.08002 * 126.29277 * 0.02562 * 21 20 18 41 41 H 1.09000 * 109.46761 * 90.00184 * 23 22 21 42 42 H 1.08993 * 109.47679 * 210.00172 * 23 22 21 43 43 H 1.08999 * 109.46901 * 330.00887 * 23 22 21 44 44 H 1.09003 * 112.84732 * 170.02525 * 26 25 24 45 45 H 1.09006 * 113.61394 * 334.56380 * 27 26 25 46 46 H 1.08997 * 113.61889 * 105.46748 * 27 26 25 47 47 H 1.09000 * 113.53741 * 270.80779 * 28 27 26 48 48 H 1.09003 * 113.74200 * 139.93810 * 28 27 26 49 49 H 1.08998 * 113.61574 * 254.53110 * 29 26 25 50 50 H 1.08995 * 113.61573 * 25.35237 * 29 26 25 51 51 H 1.09004 * 110.36432 * 143.19672 * 30 17 16 52 52 H 1.09000 * 110.37199 * 265.40454 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1492 -0.0075 2.3758 6 1 1.8927 1.0404 2.4242 7 6 2.6114 -0.6621 3.5093 8 7 2.9236 -1.9393 3.4504 9 14 2.7905 0.2699 5.1182 10 1 1.4685 0.8077 5.5285 11 1 3.2994 -0.6485 6.1683 12 1 3.7465 1.3917 4.9367 13 6 2.0400 -0.7213 -1.2493 14 1 1.6547 -1.7399 -1.2944 15 6 1.6776 0.0688 -2.5345 16 6 2.7787 -0.3590 -3.5276 17 7 3.9165 -0.8467 -2.7344 18 6 5.0707 -1.3324 -3.2326 19 8 5.9496 -1.7040 -2.4789 20 6 5.2676 -1.4132 -4.6915 21 6 4.3640 -1.0318 -5.6627 22 7 4.9320 -1.2696 -6.8558 23 6 4.3205 -1.0114 -8.1618 24 7 6.2062 -1.8069 -6.6414 25 6 6.4164 -1.8965 -5.3572 26 6 7.6676 -2.4183 -4.6989 27 6 8.9617 -1.9986 -5.4158 28 6 9.4822 -3.4204 -5.1367 29 6 8.0110 -3.8656 -5.0887 30 6 3.5881 -0.7104 -1.3037 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8900 34 1 2.2490 -1.6318 1.1526 35 1 3.2469 -2.3967 4.2424 36 1 0.6921 -0.2201 -2.8998 37 1 1.7201 1.1425 -2.3520 38 1 3.0869 0.4940 -4.1323 39 1 2.4061 -1.1564 -4.1705 40 1 3.3807 -0.6181 -5.4940 41 1 4.5672 0.0000 -8.4848 42 1 4.7010 -1.7282 -8.8893 43 1 3.2382 -1.1136 -8.0828 44 1 7.6863 -2.2394 -3.6239 45 1 8.8240 -1.7844 -6.4757 46 1 9.5169 -1.2192 -4.8941 47 1 9.9985 -3.5152 -4.1814 48 1 10.0425 -3.8532 -5.9654 49 1 7.7998 -4.5912 -4.3032 50 1 7.6116 -4.1632 -6.0582 51 1 3.9935 -1.5505 -0.7397 52 1 3.9764 0.2302 -0.9131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484344900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:24 Heat of formation + Delta-G solvation = 79.883994 kcal Electronic energy + Delta-G solvation = -30879.837216 eV Core-core repulsion = 26882.173128 eV Total energy + Delta-G solvation = -3997.664088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.70193 -39.58983 -38.52708 -37.50240 -35.17858 -33.49224 -32.53492 -31.00491 -30.26353 -28.52491 -28.18928 -27.87738 -25.63614 -25.41975 -23.95322 -23.78187 -21.85615 -21.53009 -20.78837 -19.63325 -19.52530 -18.81961 -17.33214 -16.84327 -16.43988 -16.06558 -15.71833 -15.55518 -15.28187 -14.94426 -14.73680 -14.16410 -13.87311 -13.75241 -13.36631 -13.29715 -13.26094 -13.01963 -12.58487 -12.55989 -12.51814 -12.48241 -12.14843 -12.08681 -11.99328 -11.56087 -11.33305 -11.14630 -10.85786 -10.76854 -10.75666 -10.58424 -10.54030 -10.50208 -10.38212 -10.21592 -9.88268 -9.60516 -9.51672 -9.45335 -8.87518 -8.81230 -8.39051 -6.92898 -5.71834 -3.01017 1.36389 2.05894 2.11038 3.19659 3.47176 3.51718 3.52877 3.53585 4.08111 4.34075 4.55037 4.57424 4.59545 4.66563 4.67247 4.71839 4.72321 4.92323 4.94065 4.95908 5.00259 5.14689 5.25708 5.35075 5.37549 5.44282 5.58444 5.64037 5.68006 5.71583 5.83493 5.85533 5.88211 5.90071 5.94380 5.94501 6.06634 6.15555 6.18920 6.29835 6.38054 6.41667 6.45644 6.50180 6.59313 6.63357 6.67645 6.86679 7.08768 7.43791 7.73025 7.75713 8.44884 8.46073 9.57364 10.14198 10.48598 11.50557 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.002617 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.430919 B =10697.792695 C =12531.051452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.080 0.920 15 C -0.125 4.125 16 C 0.095 3.905 17 N -0.616 5.616 18 C 0.604 3.396 19 O -0.537 6.537 20 C -0.276 4.276 21 C 0.082 3.918 22 N -0.366 5.366 23 C 0.098 3.902 24 N -0.300 5.300 25 C 0.147 3.853 26 C -0.044 4.044 27 C -0.129 4.129 28 C -0.140 4.140 29 C -0.126 4.126 30 C 0.123 3.877 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.192 0.808 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.071 0.929 50 H 0.080 0.920 51 H 0.085 0.915 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 1.779 -26.675 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.365 5.365 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.099 0.901 15 C -0.164 4.164 16 C -0.029 4.029 17 N -0.350 5.350 18 C 0.394 3.606 19 O -0.415 6.415 20 C -0.291 4.291 21 C -0.068 4.068 22 N -0.144 5.144 23 C -0.043 4.043 24 N -0.120 5.120 25 C -0.021 4.021 26 C -0.064 4.064 27 C -0.167 4.167 28 C -0.177 4.177 29 C -0.164 4.164 30 C 0.002 3.998 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.209 0.791 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.150 0.850 45 H 0.102 0.898 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.099 0.901 51 H 0.103 0.897 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.828 1.497 -27.482 27.668 hybrid contribution -0.579 0.436 1.554 1.715 sum 2.249 1.933 -25.928 26.097 Atomic orbital electron populations 1.22443 0.99173 1.00852 0.99921 1.20154 0.91839 0.95151 0.85411 0.93336 1.42407 1.78149 1.10730 1.05238 1.19142 1.36835 0.93758 0.87301 0.91323 1.24725 1.02120 0.95935 0.98001 1.69644 1.50656 1.08610 1.28979 0.86307 0.77683 0.78659 0.83754 1.21391 1.21753 1.21290 1.22670 0.94288 1.00214 0.95005 0.90116 1.22697 0.97442 1.01186 0.95028 1.22299 0.87465 0.97997 0.95114 1.48381 1.15058 1.62958 1.08611 1.16855 0.80738 0.76940 0.86067 1.90743 1.41546 1.49541 1.59650 1.20278 0.97319 1.17793 0.93736 1.23845 0.99642 0.98386 0.84931 1.48318 1.12394 1.47569 1.06147 1.21950 0.98074 1.03100 0.81139 1.77074 0.96578 1.21169 1.17228 1.22219 0.95364 0.94957 0.89547 1.21433 0.87589 0.96119 1.01254 1.22976 0.95669 0.97179 1.00899 1.22826 0.96306 0.96562 1.02026 1.22895 0.96148 0.95488 1.01863 1.22231 0.94857 1.03181 0.79556 0.94471 0.93532 0.92792 0.78228 0.93459 0.90073 0.90276 0.91651 0.91658 0.79125 0.90345 0.88977 0.89152 0.84988 0.89752 0.91276 0.89860 0.91421 0.90994 0.90135 0.89687 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.34 37.16 0.35 -2.38 16 2 C 0.18 3.40 2.41 -67.92 -0.16 3.24 16 3 H 0.05 0.92 8.05 -51.93 -0.42 0.50 16 4 N -0.72 -17.50 4.82 -53.42 -0.26 -17.75 16 5 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 6 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 9 Si 0.90 22.50 29.55 -169.99 -5.02 17.48 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 C -0.10 -1.54 2.63 -88.47 -0.23 -1.77 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 15 C -0.13 -1.33 5.59 -24.90 -0.14 -1.47 16 16 C 0.09 0.96 4.99 -3.06 -0.02 0.94 16 17 N -0.62 -9.13 3.33 -171.79 -0.57 -9.70 16 18 C 0.60 10.05 7.85 -12.52 -0.10 9.95 16 19 O -0.54 -10.84 14.96 5.27 0.08 -10.76 16 20 C -0.28 -3.85 6.10 -105.07 -0.64 -4.49 16 21 C 0.08 0.83 9.97 -16.56 -0.17 0.67 16 22 N -0.37 -3.57 3.98 -67.60 -0.27 -3.84 16 23 C 0.10 0.46 11.44 59.85 0.68 1.14 16 24 N -0.30 -3.80 12.12 33.89 0.41 -3.38 16 25 C 0.15 2.04 6.32 -82.02 -0.52 1.52 16 26 C -0.04 -0.58 3.96 -90.96 -0.36 -0.94 16 27 C -0.13 -1.42 7.63 -25.83 -0.20 -1.61 16 28 C -0.14 -1.36 8.09 -25.83 -0.21 -1.57 16 29 C -0.13 -1.43 7.63 -25.92 -0.20 -1.63 16 30 C 0.12 2.12 6.08 -2.53 -0.02 2.11 16 31 H 0.04 0.49 7.50 -51.93 -0.39 0.10 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.08 0.71 8.13 -51.93 -0.42 0.28 16 37 H 0.08 0.81 8.01 -51.93 -0.42 0.40 16 38 H 0.07 0.53 7.04 -51.92 -0.37 0.17 16 39 H 0.07 0.54 6.82 -51.93 -0.35 0.19 16 40 H 0.19 1.28 4.42 -52.49 -0.23 1.05 16 41 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.13 2.03 6.00 -51.93 -0.31 1.72 16 45 H 0.08 0.93 7.79 -51.93 -0.40 0.52 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 51 H 0.08 1.74 8.04 -51.93 -0.42 1.33 16 52 H 0.07 1.32 8.04 -51.93 -0.42 0.90 16 LS Contribution 411.86 15.07 6.21 6.21 Total: -1.00 -34.75 411.86 -9.53 -44.28 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -8.66 Total: 8.37 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.17 Total: -3.38 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.04 Total: -62.18 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.75 -9.53 -44.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484344900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.160 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds