Wall clock time and date at job start Wed Apr 1 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47554 * 2 1 4 4 N 1.46506 * 109.47306 * 120.00135 * 2 1 3 5 5 C 1.36937 * 119.99916 * 275.00237 * 4 2 1 6 6 H 1.07999 * 120.00023 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99992 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99852 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00037 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47210 * 59.99859 * 9 7 5 11 11 H 1.48494 * 109.47085 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47152 * 299.99959 * 9 7 5 13 13 C 1.53005 * 109.47095 * 239.99890 * 2 1 3 14 14 H 1.08998 * 110.88507 * 302.43148 * 13 2 1 15 15 C 1.55158 * 111.00391 * 66.35068 * 13 2 1 16 16 C 1.54324 * 103.01845 * 153.38226 * 15 13 2 17 17 N 1.47022 * 107.27092 * 338.14111 * 16 15 13 18 18 C 1.34773 * 125.65060 * 178.84944 * 17 16 15 19 19 O 1.21603 * 119.99813 * 179.69171 * 18 17 16 20 20 C 1.47428 * 119.99907 * 359.69545 * 18 17 16 21 21 C 1.38037 * 126.41684 * 359.95336 * 20 18 17 22 22 N 1.34257 * 107.42081 * 180.02562 * 21 20 18 23 23 C 1.46501 * 125.75897 * 179.97438 * 22 21 20 24 24 N 1.39940 * 108.48782 * 0.02562 * 22 21 20 25 25 C 1.30444 * 108.89995 * 359.97438 * 24 22 21 26 26 C 1.50697 * 125.98794 * 180.26723 * 25 24 22 27 27 C 1.53778 * 113.61728 * 38.83150 * 26 25 24 28 28 C 1.53956 * 87.01748 * 220.04636 * 27 26 25 29 29 C 1.53778 * 113.61358 * 301.21804 * 26 25 24 30 30 C 1.47424 * 108.69778 * 358.58620 * 17 16 15 31 31 H 1.08994 * 109.47001 * 59.99696 * 1 2 3 32 32 H 1.08995 * 109.46841 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46549 * 300.00271 * 1 2 3 34 34 H 0.97000 * 119.99721 * 94.99433 * 4 2 1 35 35 H 0.97002 * 120.00318 * 179.97438 * 8 7 5 36 36 H 1.09000 * 110.72193 * 271.94562 * 15 13 2 37 37 H 1.08997 * 110.71701 * 35.03587 * 15 13 2 38 38 H 1.09007 * 109.98973 * 218.66402 * 16 15 13 39 39 H 1.08998 * 109.78255 * 97.50041 * 16 15 13 40 40 H 1.08002 * 126.29277 * 0.02562 * 21 20 18 41 41 H 1.09000 * 109.46761 * 90.00184 * 23 22 21 42 42 H 1.08993 * 109.47679 * 210.00172 * 23 22 21 43 43 H 1.08999 * 109.46901 * 330.00887 * 23 22 21 44 44 H 1.09003 * 112.84732 * 170.02525 * 26 25 24 45 45 H 1.09006 * 113.61394 * 334.56380 * 27 26 25 46 46 H 1.08997 * 113.61889 * 105.46748 * 27 26 25 47 47 H 1.09000 * 113.53741 * 270.80779 * 28 27 26 48 48 H 1.09003 * 113.74200 * 139.93810 * 28 27 26 49 49 H 1.08998 * 113.61574 * 254.53110 * 29 26 25 50 50 H 1.08995 * 113.61573 * 25.35237 * 29 26 25 51 51 H 1.09004 * 110.36432 * 143.19672 * 30 17 16 52 52 H 1.09000 * 110.37199 * 265.40454 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1492 -0.0075 2.3758 6 1 1.8927 1.0404 2.4242 7 6 2.6114 -0.6621 3.5093 8 7 2.9236 -1.9393 3.4504 9 14 2.7905 0.2699 5.1182 10 1 1.4685 0.8077 5.5285 11 1 3.2994 -0.6485 6.1683 12 1 3.7465 1.3917 4.9367 13 6 2.0400 -0.7213 -1.2493 14 1 1.6547 -1.7399 -1.2944 15 6 1.6776 0.0688 -2.5345 16 6 2.7787 -0.3590 -3.5276 17 7 3.9165 -0.8467 -2.7344 18 6 5.0707 -1.3324 -3.2326 19 8 5.9496 -1.7040 -2.4789 20 6 5.2676 -1.4132 -4.6915 21 6 4.3640 -1.0318 -5.6627 22 7 4.9320 -1.2696 -6.8558 23 6 4.3205 -1.0114 -8.1618 24 7 6.2062 -1.8069 -6.6414 25 6 6.4164 -1.8965 -5.3572 26 6 7.6676 -2.4183 -4.6989 27 6 8.9617 -1.9986 -5.4158 28 6 9.4822 -3.4204 -5.1367 29 6 8.0110 -3.8656 -5.0887 30 6 3.5881 -0.7104 -1.3037 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3632 0.5139 0.8900 34 1 2.2490 -1.6318 1.1526 35 1 3.2469 -2.3967 4.2424 36 1 0.6921 -0.2201 -2.8998 37 1 1.7201 1.1425 -2.3520 38 1 3.0869 0.4940 -4.1323 39 1 2.4061 -1.1564 -4.1705 40 1 3.3807 -0.6181 -5.4940 41 1 4.5672 0.0000 -8.4848 42 1 4.7010 -1.7282 -8.8893 43 1 3.2382 -1.1136 -8.0828 44 1 7.6863 -2.2394 -3.6239 45 1 8.8240 -1.7844 -6.4757 46 1 9.5169 -1.2192 -4.8941 47 1 9.9985 -3.5152 -4.1814 48 1 10.0425 -3.8532 -5.9654 49 1 7.7998 -4.5912 -4.3032 50 1 7.6116 -4.1632 -6.0582 51 1 3.9935 -1.5505 -0.7397 52 1 3.9764 0.2302 -0.9131 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484344900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:22 Heat of formation + Delta-G solvation = 57.042171 kcal Electronic energy + Delta-G solvation = -30880.827712 eV Core-core repulsion = 26882.173128 eV Total energy + Delta-G solvation = -3998.654584 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -42.59837 -40.75826 -39.42689 -38.82001 -36.76305 -34.33476 -34.19158 -32.34750 -31.40847 -30.00650 -29.35177 -28.71211 -26.54351 -26.35356 -25.86851 -24.78220 -23.10841 -22.46998 -21.80230 -21.03908 -20.55076 -19.74692 -19.14484 -18.03961 -17.42982 -17.22308 -16.71211 -16.47996 -16.45196 -16.19010 -15.85882 -15.57492 -15.37492 -15.06278 -14.52910 -14.40505 -14.16601 -13.94349 -13.84442 -13.65721 -13.44590 -13.38724 -13.32945 -13.32145 -13.07383 -12.89031 -12.77300 -12.56048 -12.34534 -12.24587 -12.04668 -11.99162 -11.68425 -11.63727 -11.50137 -11.42073 -11.35674 -11.30741 -10.91007 -10.73200 -10.30946 -9.82910 -9.49009 -8.96115 -7.90224 -5.17554 0.50976 1.03430 1.43742 1.46524 1.49770 1.55381 2.06190 2.39016 2.58300 3.27849 3.43038 3.53316 3.55886 3.68375 3.75925 3.79494 3.90943 3.92124 4.02032 4.10164 4.23063 4.26585 4.31372 4.42711 4.45215 4.48762 4.57313 4.60777 4.68062 4.68952 4.74159 4.76134 4.81136 4.90295 4.91185 4.94444 5.01967 5.02482 5.03584 5.13981 5.19126 5.25841 5.27576 5.36208 5.42868 5.45551 5.55704 5.58327 5.69601 5.91374 6.31905 6.50196 6.65185 7.23451 7.37527 8.16554 8.36832 9.33355 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.002617 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.430919 B =10697.792695 C =12531.051452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.178 3.822 3 H 0.046 0.954 4 N -0.739 5.739 5 C -0.231 4.231 6 H 0.077 0.923 7 C -0.080 4.080 8 N -0.972 5.972 9 Si 0.968 3.032 10 H -0.275 1.275 11 H -0.300 1.300 12 H -0.281 1.281 13 C -0.093 4.093 14 H 0.076 0.924 15 C -0.111 4.111 16 C 0.086 3.914 17 N -0.616 5.616 18 C 0.595 3.405 19 O -0.594 6.594 20 C -0.315 4.315 21 C 0.112 3.888 22 N -0.357 5.357 23 C 0.085 3.915 24 N -0.315 5.315 25 C 0.129 3.871 26 C -0.058 4.058 27 C -0.121 4.121 28 C -0.129 4.129 29 C -0.123 4.123 30 C 0.129 3.871 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.233 0.767 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.127 0.873 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.062 0.938 50 H 0.083 0.917 51 H 0.034 0.966 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 3.749 -30.587 30.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 H 0.064 0.936 4 N -0.379 5.379 5 C -0.363 4.363 6 H 0.095 0.905 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.201 1.201 11 H -0.227 1.227 12 H -0.207 1.207 13 C -0.113 4.113 14 H 0.094 0.906 15 C -0.149 4.149 16 C -0.035 4.035 17 N -0.348 5.348 18 C 0.387 3.613 19 O -0.476 6.476 20 C -0.330 4.330 21 C -0.040 4.040 22 N -0.134 5.134 23 C -0.054 4.054 24 N -0.136 5.136 25 C -0.037 4.037 26 C -0.079 4.079 27 C -0.159 4.159 28 C -0.166 4.166 29 C -0.161 4.161 30 C 0.006 3.994 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.200 0.800 35 H 0.056 0.944 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.249 0.751 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.145 0.855 44 H 0.117 0.883 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.106 0.894 49 H 0.081 0.919 50 H 0.102 0.898 51 H 0.053 0.947 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.284 3.527 -31.488 31.686 hybrid contribution 0.131 -0.110 2.618 2.624 sum 0.416 3.418 -28.870 29.074 Atomic orbital electron populations 1.22266 0.96821 1.00901 1.01174 1.20448 0.93262 0.94721 0.84589 0.93576 1.42668 1.78482 1.10235 1.06465 1.19563 1.34345 0.94086 0.88286 0.90539 1.25519 1.03419 0.96822 1.01457 1.69819 1.52961 1.10290 1.29262 0.85291 0.77972 0.77260 0.79763 1.20137 1.22674 1.20716 1.22488 0.92056 1.00570 0.96144 0.90604 1.22743 0.99340 1.01018 0.91811 1.22711 0.85509 1.00184 0.95097 1.48410 1.15971 1.62566 1.07873 1.17405 0.80445 0.76208 0.87250 1.90707 1.43574 1.52086 1.61233 1.20149 0.99124 1.21204 0.92555 1.24266 0.99935 0.95930 0.83900 1.48788 1.11271 1.45490 1.07818 1.22469 0.99945 1.04219 0.78721 1.77014 0.98478 1.21919 1.16236 1.22283 0.95654 0.95574 0.90223 1.21360 0.89076 0.97677 0.99745 1.22924 0.94472 0.97902 1.00636 1.22795 0.95416 0.95496 1.02879 1.22868 0.97419 0.94302 1.01512 1.21921 0.96567 0.99855 0.81103 0.89753 0.94075 0.94918 0.79962 0.94354 0.86388 0.89163 0.88353 0.88575 0.75071 0.88571 0.88632 0.85504 0.88277 0.89418 0.91336 0.89698 0.89417 0.91929 0.89807 0.94736 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 9.34 71.98 0.67 -4.02 16 2 C 0.18 6.43 2.41 44.99 0.11 6.54 16 3 H 0.05 1.70 8.05 -2.39 -0.02 1.68 16 4 N -0.74 -36.84 4.82 -322.92 -1.56 -38.40 16 5 C -0.23 -12.83 9.93 84.03 0.83 -12.00 16 6 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 8 N -0.97 -61.67 13.06 21.65 0.28 -61.38 16 9 Si 0.97 47.45 29.55 68.60 2.03 49.48 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 C -0.09 -2.71 2.63 -9.40 -0.02 -2.74 16 14 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 15 C -0.11 -1.85 5.59 31.78 0.18 -1.67 16 16 C 0.09 1.38 4.99 86.73 0.43 1.81 16 17 N -0.62 -18.13 3.33 -815.66 -2.71 -20.85 16 18 C 0.60 20.66 7.85 86.66 0.68 21.34 16 19 O -0.59 -26.47 14.96 -4.04 -0.06 -26.53 16 20 C -0.32 -8.64 6.10 -20.15 -0.12 -8.76 16 21 C 0.11 1.86 9.97 84.27 0.84 2.71 16 22 N -0.36 -5.71 3.98 -367.79 -1.46 -7.17 16 23 C 0.09 0.38 11.44 127.77 1.46 1.84 16 24 N -0.32 -7.54 12.12 -46.68 -0.57 -8.11 16 25 C 0.13 3.65 6.32 43.52 0.27 3.92 16 26 C -0.06 -1.65 3.96 -11.02 -0.04 -1.69 16 27 C -0.12 -2.73 7.63 31.18 0.24 -2.49 16 28 C -0.13 -2.53 8.09 31.18 0.25 -2.27 16 29 C -0.12 -2.92 7.63 31.12 0.24 -2.69 16 30 C 0.13 4.66 6.08 86.85 0.53 5.19 16 31 H 0.08 1.82 7.50 -2.39 -0.02 1.80 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.37 20.37 7.80 -92.71 -0.72 19.64 16 35 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.12 1.22 8.13 -2.39 -0.02 1.20 16 37 H 0.09 1.38 8.01 -2.39 -0.02 1.36 16 38 H 0.10 1.02 7.04 -2.38 -0.02 1.00 16 39 H 0.10 1.02 6.82 -2.39 -0.02 1.00 16 40 H 0.23 1.64 4.42 -2.91 -0.01 1.63 16 41 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.13 -0.29 8.14 -2.39 -0.02 -0.31 16 44 H 0.10 3.46 6.00 -2.39 -0.01 3.45 16 45 H 0.09 1.90 7.79 -2.38 -0.02 1.89 16 46 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.08 1.91 8.09 -2.39 -0.02 1.90 16 51 H 0.03 1.57 8.04 -2.38 -0.02 1.55 16 52 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 Total: -1.00 -84.75 411.86 3.16 -81.59 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 0.20 Total: 30.61 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 7.01 Total: 0.76 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -6.01 Total: -135.91 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.06 Total: -26.53 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -84.75 3.16 -81.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484344900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.632 kcal (2) G-P(sol) polarization free energy of solvation -84.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds