Wall clock time and date at job start Wed Apr 1 2020 05:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47191 * 2 1 4 4 N 1.46497 * 109.47421 * 119.99899 * 2 1 3 5 5 C 1.36934 * 120.00320 * 274.99943 * 4 2 1 6 6 H 1.08005 * 119.99820 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00426 * 179.97438 * 5 4 2 8 8 N 1.31619 * 120.00274 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99699 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47607 * 89.99706 * 9 7 5 11 11 H 1.48501 * 109.47189 * 209.99450 * 9 7 5 12 12 H 1.48503 * 109.47314 * 329.99202 * 9 7 5 13 13 C 1.53003 * 109.46933 * 240.00070 * 2 1 3 14 14 H 1.09003 * 110.91506 * 299.17992 * 13 2 1 15 15 C 1.55159 * 111.00239 * 175.27790 * 13 2 1 16 16 C 1.54320 * 102.94018 * 206.42272 * 15 13 2 17 17 N 1.47188 * 107.29632 * 22.28801 * 16 15 13 18 18 C 1.34775 * 125.73575 * 181.02725 * 17 16 15 19 19 O 1.21600 * 119.99768 * 179.86549 * 18 17 16 20 20 C 1.47431 * 120.00046 * 359.86037 * 18 17 16 21 21 C 1.38040 * 126.41305 * 0.02562 * 20 18 17 22 22 N 1.34265 * 107.41466 * 179.97438 * 21 20 18 23 23 C 1.46501 * 125.75453 * 180.02562 * 22 21 20 24 24 N 1.39932 * 108.49233 * 359.97438 * 22 21 20 25 25 C 1.30450 * 108.89605 * 359.74066 * 24 22 21 26 26 C 1.50700 * 125.99058 * 180.25958 * 25 24 22 27 27 C 1.53787 * 113.61080 * 37.66636 * 26 25 24 28 28 C 1.53785 * 87.08100 * 220.01889 * 27 26 25 29 29 C 1.53780 * 113.61312 * 300.17469 * 26 25 24 30 30 C 1.47428 * 108.61319 * 0.90782 * 17 16 15 31 31 H 1.09003 * 109.46903 * 294.77518 * 1 2 3 32 32 H 1.08999 * 109.47207 * 54.77449 * 1 2 3 33 33 H 1.09001 * 109.47301 * 174.77651 * 1 2 3 34 34 H 0.97005 * 119.99940 * 94.99830 * 4 2 1 35 35 H 0.96995 * 119.99965 * 180.02562 * 8 7 5 36 36 H 1.09000 * 110.72321 * 324.78697 * 15 13 2 37 37 H 1.08994 * 110.71843 * 88.06171 * 15 13 2 38 38 H 1.09009 * 109.88063 * 141.61196 * 16 15 13 39 39 H 1.08998 * 109.88753 * 262.62333 * 16 15 13 40 40 H 1.07996 * 126.29788 * 359.96139 * 21 20 18 41 41 H 1.09004 * 109.47187 * 89.99357 * 23 22 21 42 42 H 1.08994 * 109.47138 * 209.99894 * 23 22 21 43 43 H 1.09003 * 109.47059 * 329.99981 * 23 22 21 44 44 H 1.08998 * 112.85400 * 168.97361 * 26 25 24 45 45 H 1.08993 * 113.61436 * 334.57090 * 27 26 25 46 46 H 1.09007 * 113.60897 * 105.47390 * 27 26 25 47 47 H 1.09004 * 113.61125 * 270.88565 * 28 27 26 48 48 H 1.08999 * 113.68949 * 139.99487 * 28 27 26 49 49 H 1.09005 * 113.61137 * 254.52618 * 29 26 25 50 50 H 1.08992 * 113.61954 * 25.34370 * 29 26 25 51 51 H 1.08996 * 110.36072 * 217.11573 * 30 17 16 52 52 H 1.09000 * 110.36681 * 94.90015 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8920 1.0404 2.4243 7 6 2.6115 -0.6619 3.5092 8 7 2.7377 -0.0052 4.6429 9 14 3.0558 -2.4744 3.4253 10 1 4.4885 -2.6166 3.0619 11 1 2.8158 -3.1046 4.7483 12 1 2.2161 -3.1429 2.3990 13 6 2.0400 -0.7213 -1.2493 14 1 1.7016 -1.7573 -1.2658 15 6 3.5864 -0.6396 -1.3463 16 6 3.8443 -0.7602 -2.8630 17 7 2.6067 -0.3581 -3.5507 18 6 2.4165 -0.3443 -4.8849 19 8 1.3459 0.0063 -5.3428 20 6 3.5064 -0.7541 -5.7892 21 6 4.7672 -1.1738 -5.4154 22 7 5.4478 -1.4517 -6.5389 23 6 6.8306 -1.9310 -6.6057 24 7 4.6133 -1.2074 -7.6352 25 6 3.4537 -0.7975 -7.2005 26 6 2.2671 -0.4307 -8.0540 27 6 2.0939 -1.3317 -9.2881 28 6 1.7182 -0.0598 -10.0665 29 6 2.5452 0.7225 -9.0326 30 6 1.6078 0.0247 -2.5363 31 1 -0.3633 0.4307 0.9331 32 1 -0.3633 0.5927 -0.8395 33 1 -0.3634 -1.0234 -0.0936 34 1 2.2491 -1.6318 1.1526 35 1 3.0611 -0.4624 5.4348 36 1 3.9465 0.3175 -0.9688 37 1 4.0506 -1.4666 -0.8091 38 1 4.6601 -0.0984 -3.1540 39 1 4.0949 -1.7905 -3.1156 40 1 5.1382 -1.2622 -4.4050 41 1 6.8388 -3.0208 -6.5847 42 1 7.2919 -1.5818 -7.5293 43 1 7.3898 -1.5471 -5.7524 44 1 1.3529 -0.3009 -7.4747 45 1 3.0222 -1.7923 -9.6261 46 1 1.2751 -2.0453 -9.1962 47 1 0.6531 0.1706 -10.0384 48 1 2.1324 -0.0245 -11.0741 49 1 2.0907 1.6673 -8.7345 50 1 3.5970 0.8245 -9.2997 51 1 0.6125 -0.2956 -2.8444 52 1 1.6255 1.1024 -2.3743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484344902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:29 Heat of formation + Delta-G solvation = 61.060121 kcal Electronic energy + Delta-G solvation = -30789.735513 eV Core-core repulsion = 26791.255161 eV Total energy + Delta-G solvation = -3998.480352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -42.60151 -40.78703 -39.42112 -38.86461 -36.87875 -34.33583 -34.19607 -32.55035 -31.29990 -31.07052 -28.88174 -28.64451 -26.59923 -26.51613 -25.76696 -24.60037 -23.00452 -22.46604 -21.83871 -21.26861 -20.56177 -19.73158 -19.52457 -18.08077 -17.44322 -17.31962 -16.78772 -16.46975 -16.36319 -16.22668 -15.84620 -15.67342 -15.16015 -14.90930 -14.73060 -14.51871 -14.13117 -14.00017 -13.85286 -13.80549 -13.60310 -13.44790 -13.38088 -13.36457 -13.31168 -12.89759 -12.84809 -12.77353 -12.34957 -12.10450 -11.98170 -11.86718 -11.68243 -11.63916 -11.63277 -11.40387 -11.36319 -11.32488 -10.93185 -10.73717 -10.32078 -9.83150 -9.50392 -9.26385 -7.95689 -5.28469 0.49623 1.04655 1.41916 1.41999 1.46102 1.53352 2.03093 2.38958 2.54273 3.26687 3.35809 3.39369 3.55429 3.64682 3.76342 3.79399 3.81511 3.91283 3.98502 4.04099 4.21603 4.23589 4.27596 4.38236 4.42325 4.47133 4.49326 4.55728 4.59961 4.68438 4.70829 4.73882 4.78833 4.83925 4.89934 4.94355 4.97486 5.04627 5.05461 5.06442 5.18275 5.21483 5.28112 5.34414 5.39090 5.41209 5.59856 5.60207 5.84647 5.88585 6.27901 6.48509 6.61959 7.14987 7.21189 7.90795 8.11028 9.26062 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.002362 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.115781 B =11850.291864 C =12987.413606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.187 3.813 3 H 0.047 0.953 4 N -0.745 5.745 5 C -0.219 4.219 6 H 0.054 0.946 7 C -0.068 4.068 8 N -0.988 5.988 9 Si 0.955 3.045 10 H -0.272 1.272 11 H -0.305 1.305 12 H -0.251 1.251 13 C -0.097 4.097 14 H 0.086 0.914 15 C -0.118 4.118 16 C 0.093 3.907 17 N -0.615 5.615 18 C 0.604 3.396 19 O -0.583 6.583 20 C -0.315 4.315 21 C 0.106 3.894 22 N -0.358 5.358 23 C 0.085 3.915 24 N -0.317 5.317 25 C 0.131 3.869 26 C -0.054 4.054 27 C -0.124 4.124 28 C -0.129 4.129 29 C -0.123 4.123 30 C 0.122 3.878 31 H 0.032 0.968 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.366 0.634 35 H 0.255 0.745 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.226 0.774 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.123 0.877 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.067 0.933 50 H 0.078 0.922 51 H 0.071 0.929 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.415 -5.592 -29.153 30.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.079 3.921 3 H 0.065 0.935 4 N -0.388 5.388 5 C -0.350 4.350 6 H 0.072 0.928 7 C -0.259 4.259 8 N -0.639 5.639 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.233 1.233 12 H -0.176 1.176 13 C -0.117 4.117 14 H 0.105 0.895 15 C -0.156 4.156 16 C -0.029 4.029 17 N -0.347 5.347 18 C 0.396 3.604 19 O -0.465 6.465 20 C -0.330 4.330 21 C -0.046 4.046 22 N -0.135 5.135 23 C -0.054 4.054 24 N -0.139 5.139 25 C -0.036 4.036 26 C -0.074 4.074 27 C -0.162 4.162 28 C -0.166 4.166 29 C -0.161 4.161 30 C -0.001 4.001 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.199 0.801 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.242 0.758 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.141 0.859 44 H 0.126 0.874 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.101 0.899 49 H 0.086 0.914 50 H 0.097 0.903 51 H 0.089 0.911 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.765 -5.575 -30.398 32.124 hybrid contribution -0.408 -0.549 1.731 1.861 sum 8.357 -6.123 -28.667 30.482 Atomic orbital electron populations 1.22361 0.98003 1.01318 1.00571 1.20249 0.92376 0.95066 0.84438 0.93456 1.42680 1.79956 1.09470 1.06711 1.18967 1.34441 0.94229 0.87392 0.92799 1.25489 1.02752 1.02515 0.95157 1.69895 1.55046 1.37722 1.01226 0.85415 0.78877 0.80771 0.76720 1.19820 1.23261 1.17598 1.22504 0.96548 0.99991 0.92608 0.89525 1.22616 0.94919 1.03986 0.94081 1.22600 0.86825 1.01381 0.92093 1.48358 1.15939 1.66090 1.04342 1.17149 0.86383 0.76602 0.80261 1.90680 1.28397 1.51493 1.75924 1.20192 0.96595 1.22292 0.93888 1.24262 0.91093 0.94550 0.94715 1.48765 1.13248 1.48259 1.03264 1.22436 0.74470 1.01711 1.06771 1.77028 1.02038 1.24549 1.10250 1.22356 0.94072 0.95179 0.92007 1.21383 0.93763 0.98776 0.93468 1.22907 1.01971 0.96879 0.94488 1.22775 1.00576 0.95006 0.98268 1.22869 1.00730 0.96765 0.95784 1.22108 0.92487 0.99200 0.86271 0.94894 0.91551 0.92994 0.80082 0.93607 0.90733 0.89110 0.88974 0.88860 0.75835 0.88714 0.88511 0.85915 0.87395 0.89903 0.91108 0.89229 0.89860 0.91431 0.90323 0.91062 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.35 9.22 71.98 0.66 -4.69 16 2 C 0.19 6.37 2.40 44.99 0.11 6.48 16 3 H 0.05 1.73 8.07 -2.39 -0.02 1.71 16 4 N -0.74 -31.65 4.70 -322.94 -1.52 -33.17 16 5 C -0.22 -11.84 10.41 84.03 0.87 -10.97 16 6 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 7 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 8 N -0.99 -62.07 13.97 21.65 0.30 -61.77 16 9 Si 0.95 43.34 27.74 68.60 1.90 45.24 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 12 H -0.25 -10.20 6.52 99.48 0.65 -9.55 16 13 C -0.10 -2.51 2.64 -9.40 -0.02 -2.53 16 14 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 15 C -0.12 -2.57 6.21 31.78 0.20 -2.37 16 16 C 0.09 1.54 5.00 86.70 0.43 1.97 16 17 N -0.61 -14.68 3.33 -815.23 -2.72 -17.40 16 18 C 0.60 17.04 7.85 86.67 0.68 17.72 16 19 O -0.58 -20.35 14.97 -4.03 -0.06 -20.41 16 20 C -0.31 -7.55 6.10 -20.15 -0.12 -7.67 16 21 C 0.11 1.70 9.98 84.27 0.84 2.54 16 22 N -0.36 -5.61 3.98 -367.78 -1.46 -7.07 16 23 C 0.08 0.45 11.44 127.77 1.46 1.91 16 24 N -0.32 -7.07 12.09 -46.68 -0.56 -7.63 16 25 C 0.13 3.24 6.32 43.51 0.28 3.52 16 26 C -0.05 -1.26 3.96 -11.01 -0.04 -1.30 16 27 C -0.12 -2.35 7.62 31.12 0.24 -2.11 16 28 C -0.13 -2.04 8.08 31.12 0.25 -1.78 16 29 C -0.12 -2.42 7.63 31.12 0.24 -2.19 16 30 C 0.12 3.14 5.48 86.85 0.48 3.61 16 31 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.85 7.58 -2.39 -0.02 1.83 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.37 14.77 5.66 -92.70 -0.52 14.24 16 35 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.07 1.80 8.03 -2.39 -0.02 1.78 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.09 1.13 7.01 -2.38 -0.02 1.12 16 39 H 0.09 1.11 6.86 -2.39 -0.02 1.10 16 40 H 0.23 1.85 4.43 -2.91 -0.01 1.84 16 41 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 42 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.11 3.03 6.03 -2.39 -0.01 3.01 16 45 H 0.08 1.60 7.77 -2.39 -0.02 1.58 16 46 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 50 H 0.08 1.56 8.09 -2.39 -0.02 1.55 16 51 H 0.07 1.95 8.04 -2.39 -0.02 1.93 16 52 H 0.07 1.78 8.03 -2.39 -0.02 1.76 16 Total: -1.00 -77.38 408.86 3.23 -74.15 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.34 Total: 29.32 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 7.01 Total: -1.27 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -5.96 Total: -127.03 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.06 Total: -20.41 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.90 Total: 45.24 kcal Total: -77.38 3.23 -74.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484344902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.211 kcal (2) G-P(sol) polarization free energy of solvation -77.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds