Wall clock time and date at job start Wed Apr 1 2020 05:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46904 * 2 1 4 4 N 1.46494 * 109.47435 * 120.00456 * 2 1 3 5 5 C 1.36931 * 120.00145 * 284.06904 * 4 2 1 6 6 H 1.08001 * 120.00111 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00223 * 180.27180 * 5 4 2 8 8 N 1.31618 * 119.99560 * 359.72637 * 7 5 4 9 9 Si 1.86796 * 120.00095 * 179.72755 * 7 5 4 10 10 H 1.48493 * 109.47405 * 90.00400 * 9 7 5 11 11 H 1.48499 * 109.47057 * 210.00310 * 9 7 5 12 12 H 1.48496 * 109.47023 * 329.99926 * 9 7 5 13 13 C 1.53000 * 109.47129 * 240.00730 * 2 1 3 14 14 H 1.09000 * 109.58709 * 292.56240 * 13 2 1 15 15 C 1.53196 * 109.58908 * 52.84420 * 13 2 1 16 16 C 1.53038 * 109.31701 * 174.42358 * 15 13 2 17 17 C 1.53043 * 109.53560 * 298.63599 * 16 15 13 18 18 C 1.53192 * 109.31401 * 61.36297 * 17 16 15 19 19 N 1.46924 * 109.58874 * 172.27287 * 13 2 1 20 20 C 1.34783 * 120.63027 * 6.60546 * 19 13 2 21 21 O 1.21626 * 119.99583 * 349.87848 * 20 19 13 22 22 C 1.47162 * 120.00170 * 169.87530 * 20 19 13 23 23 C 1.38403 * 126.88500 * 333.22105 * 22 20 19 24 24 C 1.39668 * 105.36064 * 179.91368 * 23 22 20 25 25 C 1.50705 * 126.07281 * 180.10441 * 24 23 22 26 26 C 1.53001 * 117.49506 * 343.89176 * 25 24 23 27 27 C 1.52996 * 117.49935 * 275.27071 * 25 24 23 28 28 N 1.30866 * 107.85810 * 0.35307 * 24 23 22 29 29 N 1.28433 * 110.92990 * 359.77626 * 28 24 23 30 30 C 1.46499 * 125.19387 * 179.97438 * 29 28 24 31 31 H 1.09002 * 109.47005 * 182.90079 * 1 2 3 32 32 H 1.08992 * 109.47172 * 302.89913 * 1 2 3 33 33 H 1.09000 * 109.47496 * 62.90820 * 1 2 3 34 34 H 0.97000 * 119.99903 * 104.06697 * 4 2 1 35 35 H 0.96998 * 119.99911 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.49665 * 294.37674 * 15 13 2 37 37 H 1.09000 * 109.49898 * 54.43730 * 15 13 2 38 38 H 1.08998 * 109.46180 * 58.64913 * 16 15 13 39 39 H 1.08995 * 109.45930 * 178.62791 * 16 15 13 40 40 H 1.09001 * 109.49451 * 181.31733 * 17 16 15 41 41 H 1.09002 * 109.49435 * 301.40907 * 17 16 15 42 42 H 1.09001 * 109.58720 * 65.15266 * 18 17 16 43 43 H 1.08997 * 109.58252 * 185.43754 * 18 17 16 44 44 H 1.08006 * 127.31677 * 359.97438 * 23 22 20 45 45 H 1.08996 * 115.54550 * 129.59357 * 25 24 23 46 46 H 1.09004 * 117.49894 * 359.97438 * 26 25 24 47 47 H 1.08994 * 117.50077 * 145.01943 * 26 25 24 48 48 H 1.09001 * 117.49878 * 214.98304 * 27 25 24 49 49 H 1.09003 * 117.49660 * 359.97438 * 27 25 24 50 50 H 1.08997 * 109.46957 * 273.73568 * 30 29 28 51 51 H 1.09002 * 109.47054 * 33.73294 * 30 29 28 52 52 H 1.08997 * 109.47497 * 153.73094 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.9749 -0.0654 2.4135 6 1 1.5801 0.9368 2.4920 7 6 2.4429 -0.7177 3.5459 8 7 2.9235 -1.9393 3.4503 9 14 2.3905 0.1381 5.2055 10 1 1.0976 -0.1563 5.8737 11 1 3.5079 -0.3531 6.0512 12 1 2.5246 1.6042 5.0108 13 6 2.0400 -0.7211 -1.2493 14 1 1.7903 -1.7803 -1.1874 15 6 1.3894 -0.1122 -2.4954 16 6 2.0056 -0.7413 -3.7470 17 6 3.5050 -0.4371 -3.7874 18 6 4.1796 -1.0497 -2.5561 19 7 3.4974 -0.5635 -1.3486 20 6 4.1945 0.0190 -0.3529 21 8 3.6079 0.5829 0.5510 22 6 5.6654 -0.0276 -0.3595 23 6 6.4634 -0.9916 -0.9505 24 6 7.7770 -0.5975 -0.6861 25 6 9.0252 -1.3202 -1.1228 26 6 8.8756 -2.7697 -1.5892 27 6 9.5254 -2.4639 -0.2382 28 7 7.7314 0.5079 0.0128 29 7 6.5166 0.8689 0.2217 30 6 6.1064 2.0599 0.9696 31 1 -0.3633 -1.0264 0.0520 32 1 -0.3633 0.5581 0.8628 33 1 -0.3634 0.4680 -0.9149 34 1 2.3726 -1.5909 1.1256 35 1 3.2508 -2.3950 4.2415 36 1 0.3174 -0.3093 -2.4793 37 1 1.5611 0.9642 -2.5064 38 1 1.8547 -1.8205 -3.7229 39 1 1.5272 -0.3274 -4.6346 40 1 3.9388 -0.8655 -4.6910 41 1 3.6573 0.6423 -3.7866 42 1 4.1065 -2.1363 -2.6020 43 1 5.2286 -0.7548 -2.5296 44 1 6.1392 -1.8629 -1.5003 45 1 9.7741 -0.7053 -1.6219 46 1 7.8745 -3.2007 -1.5797 47 1 9.5262 -3.1088 -2.3953 48 1 10.6035 -2.6017 -0.1555 49 1 8.9519 -2.6934 0.6599 50 1 6.0548 1.8219 2.0320 51 1 6.8329 2.8568 0.8106 52 1 5.1264 2.3872 0.6225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490295685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:41 Heat of formation + Delta-G solvation = 107.867435 kcal Electronic energy + Delta-G solvation = -33068.042149 eV Core-core repulsion = 29071.591514 eV Total energy + Delta-G solvation = -3996.450635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.57999 -41.29882 -38.32452 -37.91835 -36.93115 -34.48551 -34.01677 -33.52955 -31.79380 -31.33237 -29.38662 -28.23027 -26.67088 -25.96795 -24.41404 -24.14908 -23.55840 -23.03256 -21.98956 -21.28632 -20.98598 -19.76833 -18.92659 -17.93013 -17.40201 -17.11487 -16.81429 -16.72571 -16.25721 -15.79712 -15.65476 -15.47357 -15.24073 -15.06673 -14.71229 -14.53022 -14.36220 -14.21234 -13.81587 -13.76793 -13.62919 -13.53708 -13.36040 -12.99308 -12.86726 -12.82374 -12.55717 -12.40882 -12.29096 -12.16019 -11.99158 -11.87490 -11.68140 -11.61731 -11.51300 -11.33587 -11.23043 -11.10268 -10.83397 -10.11678 -9.83009 -9.72970 -9.41433 -8.59192 -7.79186 -4.97282 0.43599 1.40530 1.41663 1.42354 1.49096 1.52548 2.19261 2.33568 2.62883 2.96258 3.41023 3.54577 3.56266 3.85736 3.87182 3.95095 4.04835 4.05535 4.14458 4.16069 4.19500 4.32952 4.34338 4.36281 4.39939 4.43409 4.52057 4.57133 4.64312 4.75931 4.79849 4.83320 4.86729 4.90608 4.95789 5.06771 5.07747 5.12231 5.15711 5.22310 5.26355 5.29917 5.34008 5.44553 5.49645 5.54294 5.58861 5.63655 5.77031 5.92248 6.41898 6.56405 7.09206 7.43168 7.50166 8.26679 8.49132 9.45778 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008094 B = 0.005287 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3458.603953 B = 5294.455817 C = 7584.827227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.175 3.825 3 H 0.047 0.953 4 N -0.702 5.702 5 C -0.160 4.160 6 H 0.057 0.943 7 C -0.091 4.091 8 N -0.978 5.978 9 Si 0.950 3.050 10 H -0.291 1.291 11 H -0.306 1.306 12 H -0.278 1.278 13 C 0.153 3.847 14 H 0.063 0.937 15 C -0.120 4.120 16 C -0.114 4.114 17 C -0.126 4.126 18 C 0.089 3.911 19 N -0.598 5.598 20 C 0.551 3.449 21 O -0.485 6.485 22 C -0.031 4.031 23 C -0.193 4.193 24 C 0.048 3.952 25 C -0.084 4.084 26 C -0.145 4.145 27 C -0.176 4.176 28 N -0.304 5.304 29 N -0.271 5.271 30 C 0.096 3.904 31 H 0.042 0.958 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.362 0.638 35 H 0.238 0.762 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.180 0.820 45 H 0.131 0.869 46 H 0.095 0.905 47 H 0.130 0.870 48 H 0.119 0.881 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.117 0.883 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.286 1.430 -21.272 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.067 3.933 3 H 0.065 0.935 4 N -0.340 5.340 5 C -0.293 4.293 6 H 0.075 0.925 7 C -0.281 4.281 8 N -0.634 5.634 9 Si 0.783 3.217 10 H -0.219 1.219 11 H -0.234 1.234 12 H -0.204 1.204 13 C 0.050 3.950 14 H 0.080 0.920 15 C -0.159 4.159 16 C -0.152 4.152 17 C -0.164 4.164 18 C -0.032 4.032 19 N -0.334 5.334 20 C 0.336 3.664 21 O -0.357 6.357 22 C -0.160 4.160 23 C -0.221 4.221 24 C -0.108 4.108 25 C -0.103 4.103 26 C -0.182 4.182 27 C -0.214 4.214 28 N -0.137 5.137 29 N -0.058 5.058 30 C -0.044 4.044 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.193 0.807 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.115 0.885 44 H 0.197 0.803 45 H 0.149 0.851 46 H 0.113 0.887 47 H 0.148 0.852 48 H 0.137 0.863 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.135 0.865 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.523 2.905 -20.025 21.588 hybrid contribution -0.441 -0.470 1.678 1.798 sum 7.082 2.435 -18.347 19.817 Atomic orbital electron populations 1.22444 0.98021 1.00743 1.00766 1.20638 0.91481 0.96240 0.84967 0.93524 1.42416 1.73295 1.15183 1.03116 1.19164 1.27924 0.96475 0.85772 0.92498 1.25158 1.04938 0.97724 1.00254 1.69790 1.52097 1.13771 1.27707 0.85416 0.76322 0.77940 0.81999 1.21933 1.23386 1.20369 1.21469 0.78462 0.99171 0.95900 0.91951 1.21973 1.00646 1.00169 0.93114 1.21524 0.95145 1.01327 0.97170 1.21893 0.96140 1.00916 0.97468 1.22360 0.98035 0.99400 0.83428 1.47564 1.07124 1.60625 1.18048 1.17249 0.84387 0.82040 0.82738 1.91142 1.68583 1.40981 1.34989 1.21910 0.93389 0.96184 1.04566 1.22323 0.91498 1.01611 1.06701 1.21536 0.95291 0.93903 1.00109 1.20144 0.94136 0.90526 1.05535 1.23110 1.03046 0.94308 0.97741 1.23024 1.01846 1.01602 0.94899 1.72973 1.02978 1.17948 1.19764 1.45619 1.02127 1.20240 1.37785 1.22182 1.02627 0.83707 0.95845 0.93908 0.95103 0.90402 0.80668 0.95301 0.89195 0.92149 0.91085 0.89742 0.88146 0.92575 0.90505 0.88527 0.80333 0.85131 0.88699 0.85176 0.86280 0.91222 0.91236 0.86507 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.67 8.91 71.98 0.64 -5.03 16 2 C 0.17 7.04 1.78 44.99 0.08 7.12 16 3 H 0.05 2.11 6.30 -2.39 -0.02 2.09 16 4 N -0.70 -36.35 3.19 -322.95 -1.03 -37.38 16 5 C -0.16 -9.35 8.26 84.04 0.69 -8.65 16 6 H 0.06 3.34 7.83 -2.91 -0.02 3.31 16 7 C -0.09 -5.59 5.50 84.86 0.47 -5.12 16 8 N -0.98 -63.75 13.06 21.65 0.28 -63.47 16 9 Si 0.95 50.31 29.55 68.60 2.03 52.34 16 10 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 11 H -0.31 -16.56 7.11 99.48 0.71 -15.85 16 12 H -0.28 -14.12 7.11 99.48 0.71 -13.41 16 13 C 0.15 4.80 2.57 44.98 0.12 4.91 16 14 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 15 C -0.12 -2.67 4.61 30.67 0.14 -2.52 16 16 C -0.11 -1.84 5.88 30.62 0.18 -1.66 16 17 C -0.13 -2.06 6.08 30.67 0.19 -1.88 16 18 C 0.09 1.96 5.12 86.36 0.44 2.40 16 19 N -0.60 -18.75 2.98 -799.08 -2.38 -21.13 16 20 C 0.55 21.73 7.03 86.59 0.61 22.34 16 21 O -0.49 -23.05 8.40 -4.11 -0.03 -23.08 16 22 C -0.03 -1.15 6.38 40.79 0.26 -0.89 16 23 C -0.19 -5.94 7.89 22.65 0.18 -5.76 16 24 C 0.05 1.47 6.85 43.05 0.30 1.76 16 25 C -0.08 -1.84 6.33 -11.54 -0.07 -1.92 16 26 C -0.14 -2.40 10.02 30.59 0.31 -2.09 16 27 C -0.18 -3.62 10.23 30.59 0.31 -3.30 16 28 N -0.30 -10.63 11.90 -47.49 -0.57 -11.19 16 29 N -0.27 -9.88 3.75 -356.03 -1.33 -11.21 16 30 C 0.10 3.12 10.79 127.77 1.38 4.50 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.03 1.21 8.11 -2.39 -0.02 1.19 16 33 H 0.08 2.12 6.29 -2.39 -0.02 2.11 16 34 H 0.36 20.61 7.72 -92.71 -0.72 19.90 16 35 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.09 1.77 6.63 -2.38 -0.02 1.76 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 43 H 0.10 2.14 4.47 -2.39 -0.01 2.13 16 44 H 0.18 4.48 5.96 -2.91 -0.02 4.46 16 45 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.09 1.66 7.21 -2.39 -0.02 1.64 16 47 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.12 1.88 8.14 -2.39 -0.02 1.87 16 49 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 50 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 51 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 52 H 0.09 3.15 6.85 -2.39 -0.02 3.13 16 Total: -1.00 -78.25 398.05 3.39 -74.86 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.21 Total: 36.04 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 6.22 Total: 4.22 kcal Atomic # 7 Polarization: -139.35 SS G_CDS: -5.03 Total: -144.38 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.03 Total: -23.08 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.03 Total: 52.34 kcal Total: -78.25 3.39 -74.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490295685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.729 kcal (2) G-P(sol) polarization free energy of solvation -78.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds