Wall clock time and date at job start Wed Apr 1 2020 05:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47182 * 2 1 4 4 N 1.46503 * 109.47268 * 240.00100 * 2 1 3 5 5 C 1.36933 * 120.00022 * 85.00247 * 4 2 1 6 6 H 1.08007 * 120.00214 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00146 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99775 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00283 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47010 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47389 * 119.99434 * 9 7 5 12 12 H 1.48497 * 109.47362 * 240.00017 * 9 7 5 13 13 C 1.52998 * 109.47451 * 119.99909 * 2 1 3 14 14 H 1.09008 * 109.70262 * 301.12356 * 13 2 1 15 15 C 1.53625 * 109.66481 * 61.71120 * 13 2 1 16 16 C 1.53041 * 109.24326 * 174.55265 * 15 13 2 17 17 C 1.53040 * 109.53636 * 298.51199 * 16 15 13 18 18 C 1.53190 * 109.31290 * 61.36524 * 17 16 15 19 19 N 1.46921 * 108.77694 * 305.36416 * 18 17 16 20 20 C 1.34780 * 120.63413 * 233.58433 * 19 18 17 21 21 O 1.21624 * 120.00439 * 187.03823 * 20 19 18 22 22 C 1.47164 * 119.99537 * 7.03782 * 20 19 18 23 23 C 1.38408 * 126.88675 * 26.20969 * 22 20 19 24 24 C 1.39671 * 105.35942 * 180.02562 * 23 22 20 25 25 C 1.50703 * 126.06734 * 179.97438 * 24 23 22 26 26 C 1.53004 * 117.49808 * 343.62225 * 25 24 23 27 27 C 1.52996 * 59.99952 * 252.50876 * 26 25 24 28 28 N 1.30861 * 107.86430 * 359.74576 * 24 23 22 29 29 N 1.28444 * 110.92298 * 0.43684 * 28 24 23 30 30 C 1.46502 * 125.18878 * 179.81927 * 29 28 24 31 31 H 1.09005 * 109.46563 * 184.67116 * 1 2 3 32 32 H 1.08993 * 109.47251 * 304.66884 * 1 2 3 33 33 H 1.09001 * 109.46794 * 64.67525 * 1 2 3 34 34 H 0.96997 * 119.99702 * 264.99155 * 4 2 1 35 35 H 0.97002 * 120.00130 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.63255 * 54.55729 * 15 13 2 37 37 H 1.09003 * 109.43113 * 294.42374 * 15 13 2 38 38 H 1.09000 * 109.45621 * 178.49150 * 16 15 13 39 39 H 1.08998 * 109.46051 * 58.53492 * 16 15 13 40 40 H 1.09005 * 109.49964 * 301.41411 * 17 16 15 41 41 H 1.09002 * 109.49346 * 181.31939 * 17 16 15 42 42 H 1.09004 * 109.58876 * 185.57367 * 18 17 16 43 43 H 1.09006 * 109.70142 * 65.21996 * 18 17 16 44 44 H 1.08005 * 127.31844 * 0.04232 * 23 22 20 45 45 H 1.08997 * 115.54905 * 129.32780 * 25 24 23 46 46 H 1.08998 * 117.50154 * 0.02562 * 26 25 24 47 47 H 1.08998 * 117.49578 * 145.01865 * 26 25 24 48 48 H 1.08999 * 117.50053 * 252.51145 * 27 26 25 49 49 H 1.09001 * 117.49438 * 107.48900 * 27 26 25 50 50 H 1.08999 * 109.47349 * 264.35217 * 30 29 28 51 51 H 1.08996 * 109.47222 * 24.35846 * 30 29 28 52 52 H 1.09006 * 109.46941 * 144.35179 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0404 -2.4243 7 6 2.6114 -0.6619 -3.5093 8 7 2.9244 -1.9390 -3.4502 9 14 2.7893 0.2698 -5.1185 10 1 2.3744 1.6820 -4.9213 11 1 4.2061 0.2269 -5.5614 12 1 1.9282 -0.3588 -6.1522 13 6 2.0401 -0.7212 1.2492 14 1 1.6625 -0.2220 2.1417 15 6 1.5660 -2.1824 1.2323 16 6 2.1921 -2.9294 2.4122 17 6 3.7164 -2.9163 2.2756 18 6 4.2148 -1.4679 2.3009 19 7 3.5092 -0.7067 1.2611 20 6 4.1964 -0.0038 0.3390 21 8 3.6052 0.7234 -0.4362 22 6 5.6621 -0.1163 0.2702 23 6 6.4325 -1.1929 0.6739 24 6 7.7530 -0.8230 0.4088 25 6 8.9787 -1.6590 0.6728 26 6 8.8296 -2.8523 1.6189 27 6 9.5835 -1.6023 2.0771 28 7 7.7366 0.3765 -0.1142 29 7 6.5349 0.8211 -0.2044 30 6 6.1576 2.1313 -0.7403 31 1 -0.3633 -1.0243 0.0837 32 1 -0.3633 0.5845 0.8451 33 1 -0.3633 0.4396 -0.9289 34 1 2.2492 -1.6317 -1.1526 35 1 3.2478 -2.3962 -4.2422 36 1 1.8710 -2.6556 0.2989 37 1 0.4798 -2.2123 1.3179 38 1 1.8370 -3.9599 2.4191 39 1 1.9068 -2.4410 3.3439 40 1 4.0012 -3.3826 1.3324 41 1 4.1606 -3.4685 3.1037 42 1 5.2869 -1.4469 2.1051 43 1 4.0130 -1.0269 3.2771 44 1 6.0862 -2.1218 1.1025 45 1 9.6654 -1.7650 -0.1670 46 1 7.8449 -3.0328 2.0499 47 1 9.4181 -3.7435 1.4014 48 1 10.6681 -1.6712 2.1611 49 1 9.0948 -0.9602 2.8099 50 1 6.0464 2.8410 0.0795 51 1 6.9325 2.4820 -1.4219 52 1 5.2129 2.0458 -1.2774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490295686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:50 Heat of formation + Delta-G solvation = 133.626644 kcal Electronic energy + Delta-G solvation = -33405.593127 eV Core-core repulsion = 29410.259495 eV Total energy + Delta-G solvation = -3995.333632 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.61 seconds Orbital eigenvalues (eV) -42.31994 -39.94503 -37.30012 -36.73783 -35.27574 -33.04800 -32.30508 -32.20895 -30.44687 -29.51186 -28.02547 -27.02676 -25.31275 -23.98573 -23.29017 -23.13887 -22.49490 -21.94526 -20.73638 -20.36249 -19.10070 -18.41788 -17.07327 -16.75425 -16.10633 -16.01731 -15.41330 -15.20166 -14.67277 -14.40383 -14.34410 -14.32014 -14.03646 -13.73002 -13.38198 -13.20805 -13.01369 -12.69105 -12.51893 -12.29115 -12.18208 -12.12864 -11.83069 -11.73184 -11.54350 -11.37010 -11.12674 -10.91507 -10.75080 -10.69130 -10.63629 -10.61207 -10.52445 -10.31990 -10.11736 -10.03412 -9.78152 -9.38909 -8.82929 -8.64136 -8.52587 -8.25654 -8.00137 -6.61380 -5.52911 -2.75134 1.77698 2.68057 2.72122 3.47122 3.53411 3.59226 3.61369 3.77946 3.85472 4.45298 4.76211 4.80476 4.86198 4.94271 4.97523 5.07722 5.10665 5.17342 5.35466 5.37321 5.39991 5.49370 5.53899 5.56878 5.59611 5.70326 5.71201 5.78256 5.80398 5.82433 5.90797 5.96083 6.00892 6.02796 6.06593 6.11578 6.15914 6.20308 6.26822 6.32080 6.43972 6.50946 6.60442 6.72093 6.85916 7.00031 7.03965 7.07964 7.38601 7.91539 7.96776 8.37595 8.65553 8.87912 9.77116 10.34563 10.70655 11.71327 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009001 B = 0.005247 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.908145 B = 5335.318562 C = 7059.564951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.167 3.833 3 H 0.084 0.916 4 N -0.707 5.707 5 C -0.180 4.180 6 H 0.065 0.935 7 C -0.027 4.027 8 N -0.943 5.943 9 Si 0.895 3.105 10 H -0.284 1.284 11 H -0.298 1.298 12 H -0.297 1.297 13 C 0.149 3.851 14 H 0.064 0.936 15 C -0.133 4.133 16 C -0.116 4.116 17 C -0.136 4.136 18 C 0.079 3.921 19 N -0.597 5.597 20 C 0.578 3.422 21 O -0.456 6.456 22 C -0.001 4.001 23 C -0.205 4.205 24 C 0.050 3.950 25 C -0.067 4.067 26 C -0.167 4.167 27 C -0.169 4.169 28 N -0.284 5.284 29 N -0.258 5.258 30 C 0.084 3.916 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.055 0.945 34 H 0.378 0.622 35 H 0.247 0.753 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.058 0.942 44 H 0.165 0.835 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.077 0.923 51 H 0.091 0.909 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.003 -0.184 16.811 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.057 3.943 3 H 0.101 0.899 4 N -0.349 5.349 5 C -0.312 4.312 6 H 0.083 0.917 7 C -0.221 4.221 8 N -0.595 5.595 9 Si 0.728 3.272 10 H -0.209 1.209 11 H -0.226 1.226 12 H -0.225 1.225 13 C 0.046 3.954 14 H 0.082 0.918 15 C -0.171 4.171 16 C -0.154 4.154 17 C -0.174 4.174 18 C -0.044 4.044 19 N -0.333 5.333 20 C 0.362 3.638 21 O -0.326 6.326 22 C -0.131 4.131 23 C -0.233 4.233 24 C -0.106 4.106 25 C -0.087 4.087 26 C -0.205 4.205 27 C -0.207 4.207 28 N -0.117 5.117 29 N -0.044 5.044 30 C -0.057 4.057 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.213 0.787 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.126 0.874 43 H 0.077 0.923 44 H 0.182 0.818 45 H 0.133 0.867 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.114 0.886 49 H 0.112 0.888 50 H 0.096 0.904 51 H 0.110 0.890 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.310 1.423 15.715 17.391 hybrid contribution -0.319 -0.689 -0.804 1.106 sum 6.991 0.733 14.912 16.485 Atomic orbital electron populations 1.22609 1.00077 1.00285 1.00182 1.20714 0.90375 0.97918 0.85277 0.89889 1.42411 1.77513 1.09754 1.05211 1.19097 1.32508 0.93183 0.86369 0.91663 1.24565 1.04013 0.95967 0.97542 1.69641 1.53247 1.08559 1.28057 0.86254 0.76972 0.78806 0.85155 1.20905 1.22620 1.22495 1.21686 0.78019 0.96096 0.99614 0.91779 1.22078 1.00242 0.95511 0.99279 1.21499 0.95124 1.00305 0.98457 1.21915 0.96587 0.96435 1.02499 1.22382 0.99629 0.91442 0.90943 1.47460 1.06140 1.50041 1.29662 1.16790 0.83611 0.82359 0.81015 1.90963 1.67189 1.36885 1.37523 1.21729 0.93324 0.92192 1.05825 1.22087 0.91906 1.00088 1.09193 1.20887 0.93918 0.92405 1.03424 1.19966 0.95450 0.98892 0.94368 1.22976 1.02388 0.92223 1.02871 1.22967 0.99702 1.01064 0.96953 1.72995 1.04027 1.13936 1.20696 1.45428 1.02169 1.14197 1.42613 1.22345 1.04357 0.78861 1.00100 0.93710 0.94892 0.92549 0.78693 0.94272 0.90252 0.90977 0.92121 0.92426 0.91059 0.91363 0.87384 0.92343 0.81823 0.86683 0.88383 0.88263 0.88570 0.88810 0.90425 0.89049 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.30 37.16 0.35 -2.74 16 2 C 0.17 3.32 1.89 -67.93 -0.13 3.19 16 3 H 0.08 1.81 5.94 -52.01 -0.31 1.50 16 4 N -0.71 -17.36 3.40 -53.42 -0.18 -17.54 16 5 C -0.18 -5.03 8.06 -15.06 -0.12 -5.15 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.03 -0.81 5.50 -17.43 -0.10 -0.91 16 8 N -0.94 -29.32 13.06 55.49 0.72 -28.60 16 9 Si 0.89 23.63 29.55 -169.99 -5.02 18.61 16 10 H -0.28 -7.26 7.11 56.52 0.40 -6.85 16 11 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 12 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 13 C 0.15 2.42 2.77 -67.38 -0.19 2.23 16 14 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 15 C -0.13 -1.99 4.81 -26.39 -0.13 -2.12 16 16 C -0.12 -1.37 5.88 -26.69 -0.16 -1.53 16 17 C -0.14 -1.57 5.93 -26.61 -0.16 -1.73 16 18 C 0.08 0.99 5.84 -3.71 -0.02 0.97 16 19 N -0.60 -9.71 2.96 -166.32 -0.49 -10.20 16 20 C 0.58 11.16 6.92 -12.64 -0.09 11.08 16 21 O -0.46 -10.14 8.24 5.26 0.04 -10.10 16 22 C 0.00 -0.02 6.54 -82.06 -0.54 -0.56 16 23 C -0.20 -3.29 8.03 -38.98 -0.31 -3.60 16 24 C 0.05 0.80 6.85 -82.47 -0.57 0.23 16 25 C -0.07 -0.82 6.33 -91.77 -0.58 -1.40 16 26 C -0.17 -1.59 10.02 -26.73 -0.27 -1.86 16 27 C -0.17 -1.63 10.23 -26.73 -0.27 -1.90 16 28 N -0.28 -4.98 11.90 33.64 0.40 -4.58 16 29 N -0.26 -4.58 3.75 -63.88 -0.24 -4.82 16 30 C 0.08 1.26 10.98 59.85 0.66 1.91 16 31 H 0.04 0.78 6.38 -51.93 -0.33 0.45 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.38 10.01 5.91 -40.82 -0.24 9.77 16 35 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.08 1.47 6.29 -51.93 -0.33 1.15 16 37 H 0.07 1.02 6.69 -51.93 -0.35 0.68 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.11 1.35 3.15 -51.93 -0.16 1.18 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.16 2.28 5.44 -52.48 -0.29 1.99 16 45 H 0.12 1.37 8.14 -51.93 -0.42 0.94 16 46 H 0.10 0.90 7.22 -51.93 -0.38 0.53 16 47 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 52 H 0.12 2.05 6.43 -51.93 -0.33 1.71 16 LS Contribution 393.67 15.07 5.93 5.93 Total: -1.00 -33.74 393.67 -9.63 -43.37 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -8.18 Total: 11.79 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -2.62 Total: -3.88 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: 0.21 Total: -65.73 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.04 Total: -10.10 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -5.02 Total: 18.61 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.74 -9.63 -43.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490295686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.001 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds