Wall clock time and date at job start Wed Apr 1 2020 05:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47182 * 2 1 4 4 N 1.46503 * 109.47268 * 240.00100 * 2 1 3 5 5 C 1.36933 * 120.00022 * 85.00247 * 4 2 1 6 6 H 1.08007 * 120.00214 * 359.97438 * 5 4 2 7 7 C 1.38813 * 120.00146 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99775 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00283 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47010 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47389 * 119.99434 * 9 7 5 12 12 H 1.48497 * 109.47362 * 240.00017 * 9 7 5 13 13 C 1.52998 * 109.47451 * 119.99909 * 2 1 3 14 14 H 1.09008 * 109.70262 * 301.12356 * 13 2 1 15 15 C 1.53625 * 109.66481 * 61.71120 * 13 2 1 16 16 C 1.53041 * 109.24326 * 174.55265 * 15 13 2 17 17 C 1.53040 * 109.53636 * 298.51199 * 16 15 13 18 18 C 1.53190 * 109.31290 * 61.36524 * 17 16 15 19 19 N 1.46921 * 108.77694 * 305.36416 * 18 17 16 20 20 C 1.34780 * 120.63413 * 233.58433 * 19 18 17 21 21 O 1.21624 * 120.00439 * 187.03823 * 20 19 18 22 22 C 1.47164 * 119.99537 * 7.03782 * 20 19 18 23 23 C 1.38408 * 126.88675 * 26.20969 * 22 20 19 24 24 C 1.39671 * 105.35942 * 180.02562 * 23 22 20 25 25 C 1.50703 * 126.06734 * 179.97438 * 24 23 22 26 26 C 1.53004 * 117.49808 * 343.62225 * 25 24 23 27 27 C 1.52996 * 59.99952 * 252.50876 * 26 25 24 28 28 N 1.30861 * 107.86430 * 359.74576 * 24 23 22 29 29 N 1.28444 * 110.92298 * 0.43684 * 28 24 23 30 30 C 1.46502 * 125.18878 * 179.81927 * 29 28 24 31 31 H 1.09005 * 109.46563 * 184.67116 * 1 2 3 32 32 H 1.08993 * 109.47251 * 304.66884 * 1 2 3 33 33 H 1.09001 * 109.46794 * 64.67525 * 1 2 3 34 34 H 0.96997 * 119.99702 * 264.99155 * 4 2 1 35 35 H 0.97002 * 120.00130 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.63255 * 54.55729 * 15 13 2 37 37 H 1.09003 * 109.43113 * 294.42374 * 15 13 2 38 38 H 1.09000 * 109.45621 * 178.49150 * 16 15 13 39 39 H 1.08998 * 109.46051 * 58.53492 * 16 15 13 40 40 H 1.09005 * 109.49964 * 301.41411 * 17 16 15 41 41 H 1.09002 * 109.49346 * 181.31939 * 17 16 15 42 42 H 1.09004 * 109.58876 * 185.57367 * 18 17 16 43 43 H 1.09006 * 109.70142 * 65.21996 * 18 17 16 44 44 H 1.08005 * 127.31844 * 0.04232 * 23 22 20 45 45 H 1.08997 * 115.54905 * 129.32780 * 25 24 23 46 46 H 1.08998 * 117.50154 * 0.02562 * 26 25 24 47 47 H 1.08998 * 117.49578 * 145.01865 * 26 25 24 48 48 H 1.08999 * 117.50053 * 252.51145 * 27 26 25 49 49 H 1.09001 * 117.49438 * 107.48900 * 27 26 25 50 50 H 1.08999 * 109.47349 * 264.35217 * 30 29 28 51 51 H 1.08996 * 109.47222 * 24.35846 * 30 29 28 52 52 H 1.09006 * 109.46941 * 144.35179 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0404 -2.4243 7 6 2.6114 -0.6619 -3.5093 8 7 2.9244 -1.9390 -3.4502 9 14 2.7893 0.2698 -5.1185 10 1 2.3744 1.6820 -4.9213 11 1 4.2061 0.2269 -5.5614 12 1 1.9282 -0.3588 -6.1522 13 6 2.0401 -0.7212 1.2492 14 1 1.6625 -0.2220 2.1417 15 6 1.5660 -2.1824 1.2323 16 6 2.1921 -2.9294 2.4122 17 6 3.7164 -2.9163 2.2756 18 6 4.2148 -1.4679 2.3009 19 7 3.5092 -0.7067 1.2611 20 6 4.1964 -0.0038 0.3390 21 8 3.6052 0.7234 -0.4362 22 6 5.6621 -0.1163 0.2702 23 6 6.4325 -1.1929 0.6739 24 6 7.7530 -0.8230 0.4088 25 6 8.9787 -1.6590 0.6728 26 6 8.8296 -2.8523 1.6189 27 6 9.5835 -1.6023 2.0771 28 7 7.7366 0.3765 -0.1142 29 7 6.5349 0.8211 -0.2044 30 6 6.1576 2.1313 -0.7403 31 1 -0.3633 -1.0243 0.0837 32 1 -0.3633 0.5845 0.8451 33 1 -0.3633 0.4396 -0.9289 34 1 2.2492 -1.6317 -1.1526 35 1 3.2478 -2.3962 -4.2422 36 1 1.8710 -2.6556 0.2989 37 1 0.4798 -2.2123 1.3179 38 1 1.8370 -3.9599 2.4191 39 1 1.9068 -2.4410 3.3439 40 1 4.0012 -3.3826 1.3324 41 1 4.1606 -3.4685 3.1037 42 1 5.2869 -1.4469 2.1051 43 1 4.0130 -1.0269 3.2771 44 1 6.0862 -2.1218 1.1025 45 1 9.6654 -1.7650 -0.1670 46 1 7.8449 -3.0328 2.0499 47 1 9.4181 -3.7435 1.4014 48 1 10.6681 -1.6712 2.1611 49 1 9.0948 -0.9602 2.8099 50 1 6.0464 2.8410 0.0795 51 1 6.9325 2.4820 -1.4219 52 1 5.2129 2.0458 -1.2774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490295686.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:48 Heat of formation + Delta-G solvation = 113.146745 kcal Electronic energy + Delta-G solvation = -33406.481202 eV Core-core repulsion = 29410.259495 eV Total energy + Delta-G solvation = -3996.221707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -43.59296 -41.30131 -38.34810 -37.88957 -36.91679 -34.41031 -33.99375 -33.50382 -31.87369 -31.04522 -29.63954 -28.21164 -26.61049 -25.77850 -24.73910 -24.23002 -23.52203 -22.99924 -21.94859 -21.64243 -20.40572 -19.66127 -19.07396 -18.07493 -17.46354 -17.17824 -16.82255 -16.31885 -16.24687 -15.83990 -15.76436 -15.46537 -15.34126 -15.22627 -14.69976 -14.54146 -14.35467 -14.12159 -13.87398 -13.58768 -13.53100 -13.48252 -13.07952 -13.03199 -12.89300 -12.82733 -12.62431 -12.32059 -12.25382 -12.12209 -12.04964 -11.79914 -11.67529 -11.55389 -11.46217 -11.34378 -11.25657 -11.07132 -10.86117 -10.06866 -9.81529 -9.64914 -9.37138 -8.64549 -7.79129 -4.97276 0.42266 1.39211 1.40088 1.44444 1.48717 1.52647 2.18713 2.39507 2.63125 2.99621 3.38989 3.55895 3.56548 3.90222 3.95623 3.99831 4.04446 4.08089 4.12869 4.18961 4.22760 4.29289 4.30253 4.39807 4.41418 4.45309 4.54016 4.61407 4.65625 4.76496 4.81911 4.87946 4.88876 4.92660 4.99648 5.05792 5.09118 5.14184 5.17949 5.27083 5.29912 5.33615 5.36561 5.47364 5.52276 5.57471 5.61839 5.67707 5.78511 5.94007 6.44201 6.58263 7.09748 7.44493 7.52604 8.30534 8.53761 9.45947 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009001 B = 0.005247 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.908145 B = 5335.318562 C = 7059.564951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.162 3.838 3 H 0.063 0.937 4 N -0.708 5.708 5 C -0.154 4.154 6 H 0.057 0.943 7 C -0.092 4.092 8 N -0.978 5.978 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.309 1.309 12 H -0.299 1.299 13 C 0.152 3.848 14 H 0.096 0.904 15 C -0.127 4.127 16 C -0.110 4.110 17 C -0.132 4.132 18 C 0.075 3.925 19 N -0.594 5.594 20 C 0.570 3.430 21 O -0.502 6.502 22 C -0.030 4.030 23 C -0.198 4.198 24 C 0.050 3.950 25 C -0.100 4.100 26 C -0.152 4.152 27 C -0.152 4.152 28 N -0.304 5.304 29 N -0.270 5.270 30 C 0.084 3.916 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.368 0.632 35 H 0.238 0.762 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.184 0.816 45 H 0.114 0.886 46 H 0.103 0.897 47 H 0.118 0.882 48 H 0.116 0.884 49 H 0.091 0.909 50 H 0.101 0.899 51 H 0.105 0.895 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.392 -0.976 20.287 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 H 0.081 0.919 4 N -0.348 5.348 5 C -0.287 4.287 6 H 0.075 0.925 7 C -0.281 4.281 8 N -0.634 5.634 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.238 1.238 12 H -0.227 1.227 13 C 0.049 3.951 14 H 0.114 0.886 15 C -0.166 4.166 16 C -0.147 4.147 17 C -0.170 4.170 18 C -0.047 4.047 19 N -0.328 5.328 20 C 0.356 3.644 21 O -0.375 6.375 22 C -0.160 4.160 23 C -0.226 4.226 24 C -0.107 4.107 25 C -0.120 4.120 26 C -0.189 4.189 27 C -0.190 4.190 28 N -0.137 5.137 29 N -0.057 5.057 30 C -0.056 4.056 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.201 0.799 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.105 0.895 44 H 0.201 0.799 45 H 0.132 0.868 46 H 0.121 0.879 47 H 0.137 0.863 48 H 0.134 0.866 49 H 0.109 0.891 50 H 0.120 0.880 51 H 0.123 0.877 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.672 0.653 19.260 20.742 hybrid contribution -0.432 -0.395 -1.744 1.840 sum 7.240 0.258 17.516 18.955 Atomic orbital electron populations 1.22439 0.98265 1.01073 1.00341 1.20832 0.91427 0.97024 0.85381 0.91903 1.42488 1.77313 1.09172 1.05801 1.19243 1.29362 0.92626 0.87483 0.92543 1.25114 1.05962 0.96805 1.00240 1.69781 1.55781 1.09784 1.28018 0.85388 0.76015 0.78390 0.82205 1.19707 1.23799 1.22717 1.21676 0.78141 0.96801 0.98520 0.88597 1.22005 1.01056 0.94551 0.98938 1.21488 0.94831 1.00722 0.97704 1.21910 0.96754 0.95675 1.02627 1.22638 0.99348 0.91871 0.90804 1.47597 1.06300 1.49392 1.29556 1.17113 0.84191 0.82102 0.81043 1.90931 1.68092 1.38986 1.39510 1.21879 0.93199 0.93488 1.07427 1.22372 0.91801 1.00030 1.08428 1.21509 0.95161 0.91971 1.02036 1.20116 0.94896 1.00948 0.95992 1.23125 1.02964 0.92262 1.00578 1.23036 1.00871 1.00708 0.94410 1.72984 1.04050 1.15057 1.21599 1.45649 1.02253 1.14795 1.42957 1.22366 1.03297 0.78818 1.01091 0.93120 0.91295 0.95223 0.79902 0.95301 0.94511 0.89982 0.90971 0.89773 0.93730 0.87649 0.87424 0.89523 0.79911 0.86779 0.87895 0.86333 0.86586 0.89052 0.88019 0.87666 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 9.30 71.98 0.67 -4.99 16 2 C 0.16 6.44 1.89 44.99 0.09 6.53 16 3 H 0.06 2.81 5.94 -3.70 -0.02 2.79 16 4 N -0.71 -35.85 3.40 -322.94 -1.10 -36.95 16 5 C -0.15 -8.92 8.06 84.03 0.68 -8.24 16 6 H 0.06 3.33 7.83 -2.91 -0.02 3.30 16 7 C -0.09 -5.60 5.50 84.86 0.47 -5.13 16 8 N -0.98 -63.28 13.06 21.65 0.28 -63.00 16 9 Si 0.95 50.51 29.55 68.60 2.03 52.54 16 10 H -0.27 -13.79 7.11 99.48 0.71 -13.08 16 11 H -0.31 -16.89 7.11 99.48 0.71 -16.18 16 12 H -0.30 -15.89 7.11 99.48 0.71 -15.18 16 13 C 0.15 4.67 2.77 45.12 0.12 4.79 16 14 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 15 C -0.13 -3.60 4.81 30.82 0.15 -3.45 16 16 C -0.11 -2.19 5.88 30.62 0.18 -2.01 16 17 C -0.13 -2.61 5.93 30.67 0.18 -2.43 16 18 C 0.07 1.67 5.84 86.36 0.50 2.17 16 19 N -0.59 -18.71 2.96 -798.36 -2.36 -21.07 16 20 C 0.57 22.47 6.92 86.59 0.60 23.07 16 21 O -0.50 -23.29 8.24 -4.11 -0.03 -23.32 16 22 C -0.03 -1.13 6.54 40.79 0.27 -0.87 16 23 C -0.20 -6.29 8.03 22.66 0.18 -6.11 16 24 C 0.05 1.56 6.85 43.05 0.30 1.85 16 25 C -0.10 -2.30 6.33 -11.54 -0.07 -2.38 16 26 C -0.15 -2.46 10.02 30.59 0.31 -2.15 16 27 C -0.15 -2.53 10.23 30.59 0.31 -2.22 16 28 N -0.30 -10.78 11.90 -47.49 -0.57 -11.34 16 29 N -0.27 -9.85 3.75 -356.01 -1.33 -11.18 16 30 C 0.08 2.64 10.98 127.77 1.40 4.04 16 31 H 0.05 1.70 6.38 -2.38 -0.02 1.69 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.37 20.22 5.91 -92.71 -0.55 19.67 16 35 H 0.24 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.04 1.37 6.29 -2.38 -0.02 1.35 16 37 H 0.08 2.13 6.69 -2.39 -0.02 2.12 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.11 2.44 3.15 -2.39 -0.01 2.43 16 43 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.18 4.85 5.44 -2.91 -0.02 4.83 16 45 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.10 1.56 7.22 -2.39 -0.02 1.55 16 47 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 51 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 52 H 0.09 3.32 6.43 -2.38 -0.02 3.31 16 Total: -1.00 -77.89 393.67 3.63 -74.26 By element: Atomic # 1 Polarization: 37.19 SS G_CDS: 0.38 Total: 37.57 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 6.33 Total: 2.50 kcal Atomic # 7 Polarization: -138.47 SS G_CDS: -5.08 Total: -143.54 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.03 Total: -23.32 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.03 Total: 52.54 kcal Total: -77.89 3.63 -74.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490295686.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.410 kcal (2) G-P(sol) polarization free energy of solvation -77.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds