Wall clock time and date at job start Wed Apr 1 2020 05:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47291 * 2 1 4 4 N 1.46504 * 109.47252 * 120.00610 * 2 1 3 5 5 C 1.36939 * 119.99775 * 274.99855 * 4 2 1 6 6 H 1.08000 * 119.99578 * 0.02562 * 5 4 2 7 7 C 1.38807 * 119.99410 * 179.72472 * 5 4 2 8 8 N 1.31612 * 120.00615 * 0.27586 * 7 5 4 9 9 Si 1.86809 * 119.99452 * 180.27820 * 7 5 4 10 10 H 1.48500 * 109.47157 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47114 * 119.99945 * 9 7 5 12 12 H 1.48499 * 109.46712 * 239.99748 * 9 7 5 13 13 C 1.53005 * 109.47086 * 240.00584 * 2 1 3 14 14 H 1.08996 * 109.58783 * 52.71607 * 13 2 1 15 15 C 1.53189 * 109.58697 * 292.43029 * 13 2 1 16 16 C 1.53042 * 109.31515 * 185.57786 * 15 13 2 17 17 C 1.53038 * 109.53852 * 61.36576 * 16 15 13 18 18 C 1.53192 * 109.31185 * 298.63821 * 17 16 15 19 19 N 1.46923 * 108.77858 * 54.63335 * 18 17 16 20 20 C 1.34774 * 120.63284 * 126.39143 * 19 18 17 21 21 O 1.21513 * 120.00127 * 187.49545 * 20 19 18 22 22 C 1.48184 * 120.00068 * 7.49442 * 20 19 18 23 23 C 1.39033 * 119.69077 * 192.42217 * 22 20 19 24 24 C 1.39452 * 118.95742 * 180.02562 * 23 22 20 25 25 N 1.39190 * 120.83564 * 179.97438 * 24 23 22 26 26 C 1.46499 * 119.99768 * 359.97438 * 25 24 23 27 27 C 1.46502 * 120.00096 * 179.97438 * 25 24 23 28 28 C 1.39420 * 118.33233 * 359.97438 * 24 23 22 29 29 C 1.38230 * 119.26691 * 0.02562 * 28 24 23 30 30 N 1.31648 * 120.99351 * 359.71865 * 29 28 24 31 31 H 1.09000 * 109.47235 * 304.39965 * 1 2 3 32 32 H 1.09001 * 109.47036 * 64.39983 * 1 2 3 33 33 H 1.08998 * 109.47161 * 184.39994 * 1 2 3 34 34 H 0.97005 * 119.99987 * 94.99979 * 4 2 1 35 35 H 0.97001 * 120.00150 * 180.02562 * 8 7 5 36 36 H 1.09005 * 109.49950 * 305.53182 * 15 13 2 37 37 H 1.09004 * 109.50000 * 65.59066 * 15 13 2 38 38 H 1.09001 * 109.46199 * 181.38686 * 16 15 13 39 39 H 1.08995 * 109.46059 * 301.34374 * 16 15 13 40 40 H 1.09010 * 109.49671 * 58.58507 * 17 16 15 41 41 H 1.08997 * 109.49896 * 178.65157 * 17 16 15 42 42 H 1.09003 * 109.58727 * 174.42202 * 18 17 16 43 43 H 1.08998 * 109.58459 * 294.84404 * 18 17 16 44 44 H 1.07991 * 120.52202 * 359.97438 * 23 22 20 45 45 H 1.08999 * 109.47128 * 89.99894 * 26 25 24 46 46 H 1.08997 * 109.47017 * 209.99588 * 26 25 24 47 47 H 1.08999 * 109.47098 * 330.00073 * 26 25 24 48 48 H 1.09000 * 109.46775 * 90.00231 * 27 25 24 49 49 H 1.09002 * 109.46674 * 210.00215 * 27 25 24 50 50 H 1.08995 * 109.47068 * 330.00227 * 27 25 24 51 51 H 1.08002 * 120.36567 * 179.97438 * 28 24 23 52 52 H 1.07998 * 119.50174 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0077 2.3758 6 1 1.8919 1.0401 2.4243 7 6 2.6064 -0.6636 3.5104 8 7 2.9195 -1.9406 3.4512 9 14 2.7775 0.2663 5.1215 10 1 2.3648 1.6791 4.9239 11 1 1.9119 -0.3633 6.1508 12 1 4.1923 0.2225 5.5704 13 6 2.0400 -0.7211 -1.2494 14 1 1.5753 -0.2894 -2.1358 15 6 1.6919 -2.2104 -1.1608 16 6 2.3240 -2.9491 -2.3427 17 6 3.8463 -2.8044 -2.2817 18 6 4.2188 -1.3219 -2.3830 19 7 3.4999 -0.5812 -1.3375 20 6 4.1669 0.2117 -0.4755 21 8 3.5839 0.7109 0.4665 22 6 5.6113 0.4747 -0.6766 23 6 6.3508 1.0701 0.3391 24 6 7.7088 1.3110 0.1333 25 7 8.4860 1.9055 1.1232 26 6 7.8788 2.2870 2.4007 27 6 9.9112 2.1497 0.8877 28 6 8.2686 0.9415 -1.0890 29 6 7.4667 0.3539 -2.0494 30 7 6.1884 0.1347 -1.8237 31 1 -0.3634 0.5806 0.8479 32 1 -0.3633 0.4440 -0.9268 33 1 -0.3633 -1.0246 0.0788 34 1 2.2490 -1.6319 1.1524 35 1 3.2387 -2.3990 4.2442 36 1 2.0785 -2.6194 -0.2272 37 1 0.6093 -2.3334 -1.1911 38 1 2.0575 -4.0050 -2.2955 39 1 1.9559 -2.5232 -3.2760 40 1 4.2126 -3.2079 -1.3375 41 1 4.2972 -3.3507 -3.1101 42 1 5.2932 -1.2045 -2.2409 43 1 3.9339 -0.9398 -3.3632 44 1 5.8808 1.3425 1.2724 45 1 7.9503 1.4541 3.1001 46 1 8.4039 3.1505 2.8091 47 1 6.8304 2.5403 2.2433 48 1 10.0425 3.1378 0.4467 49 1 10.4496 2.0997 1.8341 50 1 10.3018 1.3932 0.2070 51 1 9.3170 1.1133 -1.2836 52 1 7.8965 0.0658 -2.9974 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490311937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:14 Heat of formation + Delta-G solvation = 63.163039 kcal Electronic energy + Delta-G solvation = -32964.399150 eV Core-core repulsion = 28966.009987 eV Total energy + Delta-G solvation = -3998.389163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.90155 -40.71731 -38.22328 -37.92057 -36.68341 -34.10328 -33.67443 -32.31309 -32.12241 -31.13451 -29.66599 -29.29758 -26.79075 -26.21494 -25.71162 -24.78530 -24.05413 -23.00082 -21.63823 -21.45178 -19.98200 -19.06863 -18.30682 -17.89997 -17.03170 -16.80426 -16.49828 -16.26131 -16.16690 -15.94063 -15.67332 -15.60841 -15.38819 -15.07324 -14.89003 -14.70682 -14.33424 -14.18901 -13.97626 -13.74712 -13.53201 -13.45440 -13.22909 -13.21888 -13.10080 -12.99579 -12.82484 -12.59500 -12.37212 -12.23531 -12.08919 -12.03885 -11.69868 -11.64314 -11.44779 -11.37549 -11.24325 -10.82082 -10.17850 -10.05941 -9.62016 -9.22983 -8.64000 -8.58793 -7.74702 -4.92953 -0.12100 0.49444 1.40642 1.41890 1.51809 1.96783 2.10801 2.28611 2.66511 3.05211 3.31760 3.58695 3.72427 3.91898 3.93795 4.01003 4.11199 4.15255 4.17493 4.24049 4.32496 4.36542 4.39985 4.42306 4.50724 4.52286 4.68783 4.72525 4.74113 4.77690 4.82022 4.86632 4.90673 4.95374 4.99197 5.02891 5.08377 5.12286 5.19514 5.22171 5.34092 5.38528 5.46238 5.57642 5.61917 5.68273 5.76160 6.08571 6.12686 6.29968 6.48030 6.72388 6.99480 7.51785 7.61764 8.33389 8.58024 9.51037 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008030 B = 0.005549 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3486.025528 B = 5044.296576 C = 7707.710494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.166 3.834 3 H 0.054 0.946 4 N -0.703 5.703 5 C -0.148 4.148 6 H 0.053 0.947 7 C -0.098 4.098 8 N -0.983 5.983 9 Si 0.952 3.048 10 H -0.276 1.276 11 H -0.299 1.299 12 H -0.302 1.302 13 C 0.146 3.854 14 H 0.092 0.908 15 C -0.125 4.125 16 C -0.110 4.110 17 C -0.133 4.133 18 C 0.080 3.920 19 N -0.590 5.590 20 C 0.529 3.471 21 O -0.497 6.497 22 C 0.113 3.887 23 C -0.212 4.212 24 C 0.237 3.763 25 N -0.629 5.629 26 C 0.085 3.915 27 C 0.086 3.914 28 C -0.230 4.230 29 C 0.130 3.870 30 N -0.500 5.500 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.367 0.633 35 H 0.238 0.762 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.030 0.970 41 H 0.097 0.903 42 H 0.141 0.859 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.043 0.957 46 H 0.100 0.900 47 H 0.051 0.949 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.172 0.828 52 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.871 4.920 -17.165 22.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.072 0.928 4 N -0.343 5.343 5 C -0.282 4.282 6 H 0.071 0.929 7 C -0.287 4.287 8 N -0.640 5.640 9 Si 0.785 3.215 10 H -0.201 1.201 11 H -0.227 1.227 12 H -0.230 1.230 13 C 0.042 3.958 14 H 0.109 0.891 15 C -0.164 4.164 16 C -0.147 4.147 17 C -0.171 4.171 18 C -0.041 4.041 19 N -0.324 5.324 20 C 0.315 3.685 21 O -0.370 6.370 22 C -0.023 4.023 23 C -0.239 4.239 24 C 0.125 3.875 25 N -0.339 5.339 26 C -0.058 4.058 27 C -0.055 4.055 28 C -0.255 4.255 29 C -0.027 4.027 30 N -0.217 5.217 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.202 0.798 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.049 0.951 41 H 0.116 0.884 42 H 0.157 0.843 43 H 0.093 0.907 44 H 0.130 0.870 45 H 0.062 0.938 46 H 0.118 0.882 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.102 0.898 50 H 0.104 0.896 51 H 0.189 0.811 52 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 13.138 5.112 -16.992 22.079 hybrid contribution 0.348 0.313 2.554 2.597 sum 13.486 5.425 -14.438 20.488 Atomic orbital electron populations 1.22399 0.98169 1.00833 1.00458 1.20770 0.91361 0.96469 0.85690 0.92804 1.42521 1.76962 1.09072 1.05718 1.19253 1.29060 0.92436 0.87430 0.92918 1.25158 1.06174 0.96926 1.00434 1.69808 1.56353 1.09857 1.27944 0.85294 0.76385 0.78044 0.81763 1.20060 1.22733 1.23017 1.21592 0.79799 0.96236 0.98124 0.89069 1.21888 1.01073 0.94737 0.98707 1.21494 0.95167 1.00283 0.97788 1.21957 0.96588 0.97089 1.01462 1.22928 1.01877 0.89617 0.89710 1.47773 1.06814 1.45280 1.32520 1.18523 0.86147 0.81507 0.82355 1.91066 1.66705 1.50951 1.28314 1.20986 0.94134 0.96148 0.91014 1.21519 0.94165 1.06903 1.01287 1.18174 0.89287 0.90014 0.90029 1.46551 1.09740 1.63890 1.13761 1.21762 0.98913 1.00794 0.84360 1.21955 0.77839 1.02189 1.03517 1.22087 1.03276 1.07382 0.92732 1.23359 0.88113 0.91571 0.99664 1.67631 1.13620 1.20361 1.20059 0.95015 0.91133 0.93502 0.79850 0.95280 0.94737 0.90315 0.91398 0.89841 0.95138 0.88420 0.84253 0.90665 0.87035 0.93832 0.88153 0.93044 0.91604 0.89848 0.89649 0.81079 0.78008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.11 9.20 71.98 0.66 -5.45 16 2 C 0.17 7.34 1.88 44.99 0.08 7.42 16 3 H 0.05 2.68 5.92 -5.32 -0.03 2.65 16 4 N -0.70 -38.41 3.64 -322.93 -1.18 -39.59 16 5 C -0.15 -9.07 7.96 84.03 0.67 -8.40 16 6 H 0.05 3.28 7.83 -2.91 -0.02 3.26 16 7 C -0.10 -6.19 5.50 84.86 0.47 -5.72 16 8 N -0.98 -65.47 13.06 21.65 0.28 -65.19 16 9 Si 0.95 51.41 29.55 68.60 2.03 53.43 16 10 H -0.28 -14.25 7.11 99.48 0.71 -13.55 16 11 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 12 H -0.30 -16.25 7.11 99.48 0.71 -15.54 16 13 C 0.15 5.25 2.72 44.97 0.12 5.37 16 14 H 0.09 2.76 8.14 -2.39 -0.02 2.75 16 15 C -0.13 -4.24 4.88 30.67 0.15 -4.09 16 16 C -0.11 -2.82 5.88 30.62 0.18 -2.64 16 17 C -0.13 -3.54 6.08 30.67 0.19 -3.36 16 18 C 0.08 2.30 5.86 86.36 0.51 2.80 16 19 N -0.59 -21.79 2.97 -798.03 -2.37 -24.16 16 20 C 0.53 23.07 7.37 86.89 0.64 23.71 16 21 O -0.50 -25.87 9.09 -3.76 -0.03 -25.91 16 22 C 0.11 4.21 6.53 41.83 0.27 4.49 16 23 C -0.21 -7.85 8.78 22.75 0.20 -7.65 16 24 C 0.24 6.54 6.57 38.55 0.25 6.79 16 25 N -0.63 -14.37 3.40 -746.72 -2.54 -16.90 16 26 C 0.08 2.05 10.22 127.77 1.31 3.35 16 27 C 0.09 1.11 10.22 127.77 1.31 2.41 16 28 C -0.23 -4.62 9.27 22.55 0.21 -4.41 16 29 C 0.13 2.67 11.17 84.72 0.95 3.61 16 30 N -0.50 -14.45 6.21 -185.21 -1.15 -15.60 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 1.78 7.00 -2.39 -0.02 1.76 16 34 H 0.37 21.66 5.56 -92.70 -0.52 21.15 16 35 H 0.24 15.54 8.31 -92.71 -0.77 14.77 16 36 H 0.03 1.49 6.00 -2.38 -0.01 1.47 16 37 H 0.08 2.45 7.04 -2.38 -0.02 2.44 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.14 4.08 4.11 -56.22 -0.23 3.85 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.11 4.85 5.91 -2.92 -0.02 4.83 16 45 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.10 1.72 8.07 -2.39 -0.02 1.70 16 47 H 0.05 1.51 6.26 -2.39 -0.01 1.49 16 48 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.08 0.86 8.07 -2.39 -0.02 0.84 16 50 H 0.08 0.84 6.26 -2.39 -0.01 0.82 16 51 H 0.17 2.02 6.26 -2.91 -0.02 2.00 16 52 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -82.27 391.38 3.38 -78.89 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: 0.18 Total: 36.79 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 8.16 Total: 18.24 kcal Atomic # 7 Polarization: -154.49 SS G_CDS: -6.95 Total: -161.44 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.03 Total: -25.91 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.03 Total: 53.43 kcal Total: -82.27 3.38 -78.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490311937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.049 kcal (2) G-P(sol) polarization free energy of solvation -82.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds