Wall clock time and date at job start Wed Apr 1 2020 05:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.47105 * 2 1 4 4 N 1.46507 * 109.46822 * 119.99968 * 2 1 3 5 5 C 1.36936 * 119.99538 * 285.76884 * 4 2 1 6 6 H 1.07998 * 120.00548 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99764 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00181 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99946 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47065 * 89.99797 * 9 7 5 11 11 H 1.48494 * 109.46963 * 209.99863 * 9 7 5 12 12 H 1.48500 * 109.46785 * 329.99528 * 9 7 5 13 13 C 1.52998 * 109.47189 * 239.99336 * 2 1 3 14 14 H 1.08999 * 109.70570 * 287.94368 * 13 2 1 15 15 C 1.53629 * 109.66037 * 48.53042 * 13 2 1 16 16 C 1.53049 * 109.23772 * 174.54844 * 15 13 2 17 17 C 1.53036 * 109.53653 * 298.51043 * 16 15 13 18 18 C 1.53187 * 109.31510 * 61.36638 * 17 16 15 19 19 N 1.46922 * 108.77830 * 305.36614 * 18 17 16 20 20 C 1.34780 * 120.63423 * 233.58317 * 19 18 17 21 21 O 1.21512 * 120.00284 * 179.33326 * 20 19 18 22 22 C 1.48191 * 119.99417 * 359.06375 * 20 19 18 23 23 C 1.39032 * 119.68548 * 162.25600 * 22 20 19 24 24 C 1.39453 * 118.95877 * 179.73666 * 23 22 20 25 25 N 1.39185 * 120.83540 * 180.23942 * 24 23 22 26 26 C 1.46500 * 119.99904 * 180.29224 * 25 24 23 27 27 C 1.46496 * 120.00465 * 0.29050 * 25 24 23 28 28 C 1.39423 * 118.32869 * 0.52097 * 24 23 22 29 29 C 1.38232 * 119.26549 * 359.74169 * 28 24 23 30 30 N 1.31641 * 120.99509 * 359.97438 * 29 28 24 31 31 H 1.08997 * 109.46796 * 300.00334 * 1 2 3 32 32 H 1.09003 * 109.46446 * 60.00260 * 1 2 3 33 33 H 1.09000 * 109.46944 * 180.02562 * 1 2 3 34 34 H 0.96995 * 120.00162 * 105.77150 * 4 2 1 35 35 H 0.96991 * 120.00212 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.63425 * 54.56123 * 15 13 2 37 37 H 1.08994 * 109.46135 * 294.42770 * 15 13 2 38 38 H 1.09002 * 109.45540 * 178.49138 * 16 15 13 39 39 H 1.08997 * 109.46208 * 58.53483 * 16 15 13 40 40 H 1.09001 * 109.50174 * 301.41854 * 17 16 15 41 41 H 1.08997 * 109.49583 * 181.32100 * 17 16 15 42 42 H 1.09002 * 109.59132 * 185.57556 * 18 17 16 43 43 H 1.09000 * 109.70228 * 65.22120 * 18 17 16 44 44 H 1.08007 * 120.52607 * 359.97438 * 23 22 20 45 45 H 1.09005 * 109.47315 * 90.00089 * 26 25 24 46 46 H 1.09003 * 109.47674 * 209.99979 * 26 25 24 47 47 H 1.09008 * 109.47413 * 329.99951 * 26 25 24 48 48 H 1.09003 * 109.46934 * 59.99917 * 27 25 24 49 49 H 1.08996 * 109.47764 * 179.97438 * 27 25 24 50 50 H 1.09005 * 109.47142 * 300.00655 * 27 25 24 51 51 H 1.08001 * 120.36607 * 179.70901 * 28 24 23 52 52 H 1.08004 * 119.50044 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.9426 -0.0787 2.4189 6 1 1.5227 0.9129 2.5015 7 6 2.4048 -0.7332 3.5525 8 7 2.3316 -0.1453 4.7277 9 14 3.1306 -2.4485 3.4098 10 1 4.5933 -2.3490 3.1739 11 1 2.8818 -3.1974 4.6678 12 1 2.4934 -3.1627 2.2744 13 6 2.0401 -0.7214 -1.2491 14 1 1.8645 -1.7928 -1.1522 15 6 1.3091 -0.1861 -2.4898 16 6 1.9199 -0.8138 -3.7449 17 6 3.3951 -0.4199 -3.8481 18 6 4.1485 -0.9529 -2.6254 19 7 3.4788 -0.4705 -1.4099 20 6 4.1721 0.1848 -0.4579 21 8 3.6043 0.5894 0.5373 22 6 5.6281 0.4067 -0.6221 23 6 6.2676 1.3754 0.1432 24 6 7.6392 1.5677 -0.0196 25 7 8.3195 2.5231 0.7296 26 6 9.7595 2.7142 0.5391 27 6 7.5959 3.3378 1.7087 28 6 8.3107 0.7828 -0.9561 29 6 7.6028 -0.1561 -1.6829 30 7 6.3089 -0.3183 -1.5025 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 2.3953 -1.5813 1.1222 35 1 2.6549 -0.6025 5.5197 36 1 1.4138 0.8979 -2.5374 37 1 0.2526 -0.4473 -2.4298 38 1 1.3863 -0.4569 -4.6258 39 1 1.8370 -1.8990 -3.6854 40 1 3.4802 0.6662 -3.8828 41 1 3.8234 -0.8479 -4.7544 42 1 5.1768 -0.5918 -2.6438 43 1 4.1437 -2.0428 -2.6371 44 1 5.7116 1.9671 0.8554 45 1 9.9274 3.4649 -0.2332 46 1 10.2087 3.0484 1.4743 47 1 10.2140 1.7714 0.2343 48 1 7.1436 2.6885 2.4584 49 1 8.2896 4.0242 2.1941 50 1 6.8158 3.9066 1.2026 51 1 9.3720 0.9075 -1.1124 52 1 8.1192 -0.7664 -2.4090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490311939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:22 Heat of formation + Delta-G solvation = 87.231623 kcal Electronic energy + Delta-G solvation = -32770.636412 eV Core-core repulsion = 28773.290941 eV Total energy + Delta-G solvation = -3997.345471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.73509 -39.54286 -37.13750 -36.77416 -35.17224 -32.64841 -32.10904 -31.26528 -31.10767 -30.06803 -28.49302 -28.01264 -25.73246 -25.21573 -24.09136 -23.29699 -22.21515 -22.01321 -20.54252 -19.85776 -19.19176 -17.59935 -17.02853 -16.71828 -15.99760 -15.46457 -15.37645 -15.19477 -14.94891 -14.62213 -14.44241 -14.23395 -14.00858 -13.83502 -13.57778 -13.30329 -13.15758 -12.85035 -12.81229 -12.59372 -12.44780 -12.37044 -12.26553 -12.12836 -12.06522 -11.44845 -11.33348 -11.22992 -11.03267 -10.75800 -10.64474 -10.58204 -10.52786 -10.39753 -10.03818 -9.76721 -9.28826 -9.06985 -8.92802 -8.61885 -8.27795 -7.92806 -7.73889 -6.76406 -5.45848 -2.72139 0.98550 1.49252 2.84451 3.30446 3.48163 3.54686 3.59073 3.61551 4.14662 4.42721 4.65576 4.73869 4.86482 4.96098 4.98612 5.03194 5.07740 5.09790 5.17468 5.24198 5.32858 5.40413 5.42761 5.46495 5.59264 5.67971 5.69291 5.72635 5.76072 5.80174 5.86284 5.89665 5.98916 6.04411 6.12433 6.16006 6.17107 6.26543 6.39332 6.39677 6.48412 6.53914 6.66906 6.76226 6.96633 7.07993 7.09717 7.20043 7.43926 7.93118 8.09280 8.30408 8.71998 8.94371 9.52598 10.26139 10.47253 11.74715 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.005293 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.185348 B = 5288.714770 C = 7596.247804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.185 3.815 3 H 0.072 0.928 4 N -0.722 5.722 5 C -0.182 4.182 6 H 0.086 0.914 7 C -0.009 4.009 8 N -0.949 5.949 9 Si 0.877 3.123 10 H -0.292 1.292 11 H -0.297 1.297 12 H -0.283 1.283 13 C 0.142 3.858 14 H 0.064 0.936 15 C -0.125 4.125 16 C -0.120 4.120 17 C -0.134 4.134 18 C 0.070 3.930 19 N -0.596 5.596 20 C 0.526 3.474 21 O -0.431 6.431 22 C 0.135 3.865 23 C -0.185 4.185 24 C 0.245 3.755 25 N -0.627 5.627 26 C 0.092 3.908 27 C 0.088 3.912 28 C -0.245 4.245 29 C 0.128 3.872 30 N -0.497 5.497 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.353 0.647 35 H 0.252 0.748 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.151 0.849 43 H 0.052 0.948 44 H 0.147 0.853 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.060 0.940 51 H 0.132 0.868 52 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.701 4.235 -18.481 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.089 0.911 4 N -0.363 5.363 5 C -0.313 4.313 6 H 0.104 0.896 7 C -0.202 4.202 8 N -0.600 5.600 9 Si 0.710 3.290 10 H -0.219 1.219 11 H -0.224 1.224 12 H -0.209 1.209 13 C 0.038 3.962 14 H 0.082 0.918 15 C -0.164 4.164 16 C -0.158 4.158 17 C -0.172 4.172 18 C -0.053 4.053 19 N -0.332 5.332 20 C 0.309 3.691 21 O -0.299 6.299 22 C -0.001 4.001 23 C -0.210 4.210 24 C 0.134 3.866 25 N -0.338 5.338 26 C -0.051 4.051 27 C -0.054 4.054 28 C -0.271 4.271 29 C -0.030 4.030 30 N -0.213 5.213 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.186 0.814 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.167 0.833 43 H 0.071 0.929 44 H 0.165 0.835 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.079 0.921 51 H 0.149 0.851 52 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.976 4.180 -18.037 22.051 hybrid contribution 1.191 -0.876 0.464 1.549 sum 13.167 3.305 -17.573 22.206 Atomic orbital electron populations 1.22551 0.99297 1.00658 1.00418 1.20451 0.90593 0.97289 0.84119 0.91078 1.42684 1.73571 1.16333 1.03741 1.18899 1.30300 0.99696 0.82363 0.89623 1.24487 1.02665 0.97504 0.95523 1.69682 1.55047 1.37598 0.97705 0.86629 0.79356 0.87001 0.76047 1.21941 1.22397 1.20939 1.21667 0.79395 0.99346 0.95785 0.91826 1.22060 0.99601 1.00825 0.93928 1.21549 0.96040 1.00541 0.97646 1.21948 0.95723 1.01104 0.98422 1.22951 1.01333 0.98690 0.82334 1.47686 1.08394 1.57156 1.19941 1.18117 0.84903 0.82014 0.84022 1.91297 1.66608 1.45536 1.26416 1.21329 0.95128 0.91959 0.91708 1.21606 0.92825 1.02679 1.03937 1.17972 0.91115 0.87841 0.89633 1.46300 1.07740 1.38378 1.41343 1.21709 0.79964 1.01712 1.01703 1.21765 0.97153 0.94886 0.91643 1.21665 1.01181 1.02100 1.02108 1.22554 0.89844 0.94167 0.96425 1.67484 1.08310 1.26739 1.18760 0.92234 0.94111 0.93855 0.81435 0.93808 0.91587 0.90671 0.92420 0.92179 0.92214 0.91676 0.83315 0.92927 0.83539 0.93151 0.91212 0.91226 0.91638 0.90612 0.92131 0.85052 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 8.67 37.16 0.32 -2.85 16 2 C 0.18 3.85 1.83 -67.92 -0.12 3.72 16 3 H 0.07 1.64 6.22 -51.93 -0.32 1.31 16 4 N -0.72 -18.34 3.12 -53.42 -0.17 -18.50 16 5 C -0.18 -5.42 8.78 -15.06 -0.13 -5.55 16 6 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 7 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 8 N -0.95 -31.53 13.97 55.49 0.78 -30.75 16 9 Si 0.88 24.36 27.74 -169.99 -4.71 19.64 16 10 H -0.29 -8.25 7.11 56.52 0.40 -7.85 16 11 H -0.30 -8.29 7.11 56.52 0.40 -7.89 16 12 H -0.28 -7.49 6.52 56.52 0.37 -7.12 16 13 C 0.14 2.44 2.62 -67.37 -0.18 2.26 16 14 H 0.06 1.14 8.12 -51.93 -0.42 0.71 16 15 C -0.13 -1.70 4.46 -26.38 -0.12 -1.82 16 16 C -0.12 -1.38 5.88 -26.69 -0.16 -1.53 16 17 C -0.13 -1.54 6.08 -26.62 -0.16 -1.70 16 18 C 0.07 0.97 5.99 -3.72 -0.02 0.95 16 19 N -0.60 -10.29 2.97 -165.94 -0.49 -10.79 16 20 C 0.53 10.47 7.39 -12.17 -0.09 10.38 16 21 O -0.43 -10.28 9.46 5.35 0.05 -10.22 16 22 C 0.14 2.35 6.52 -83.05 -0.54 1.81 16 23 C -0.18 -3.05 8.89 -38.83 -0.35 -3.40 16 24 C 0.25 3.29 6.57 -83.63 -0.55 2.74 16 25 N -0.63 -7.00 3.39 -187.36 -0.64 -7.63 16 26 C 0.09 0.69 10.19 59.85 0.61 1.30 16 27 C 0.09 0.93 9.44 59.84 0.56 1.50 16 28 C -0.25 -2.76 9.27 -39.14 -0.36 -3.12 16 29 C 0.13 1.48 11.17 -17.64 -0.20 1.29 16 30 N -0.50 -7.34 6.22 -9.89 -0.06 -7.40 16 31 H 0.06 1.24 8.01 -51.93 -0.42 0.83 16 32 H 0.04 0.63 6.45 -51.93 -0.33 0.30 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.35 9.21 5.56 -40.82 -0.23 8.98 16 35 H 0.25 8.06 8.31 -40.82 -0.34 7.72 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.95 6.71 -51.93 -0.35 0.60 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.15 2.08 3.87 -86.80 -0.34 1.74 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.15 2.61 6.58 -52.48 -0.35 2.26 16 45 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.42 7.92 -51.93 -0.41 0.01 16 47 H 0.07 0.47 6.26 -51.92 -0.32 0.14 16 48 H 0.06 0.81 8.00 -51.93 -0.42 0.40 16 49 H 0.08 0.59 7.79 -51.93 -0.40 0.18 16 50 H 0.06 0.65 7.98 -51.93 -0.41 0.23 16 51 H 0.13 1.09 6.26 -52.49 -0.33 0.76 16 52 H 0.16 1.24 8.06 -52.48 -0.42 0.81 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -36.32 392.15 -9.36 -45.68 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -8.45 Total: 8.48 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -1.58 Total: 5.59 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -0.58 Total: -75.07 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.05 Total: -10.22 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -4.71 Total: 19.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.32 -9.36 -45.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490311939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.913 kcal (2) G-P(sol) polarization free energy of solvation -36.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds