Wall clock time and date at job start Wed Apr 1 2020 05:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.47105 * 2 1 4 4 N 1.46507 * 109.46822 * 119.99968 * 2 1 3 5 5 C 1.36936 * 119.99538 * 285.76884 * 4 2 1 6 6 H 1.07998 * 120.00548 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99764 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00181 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99946 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47065 * 89.99797 * 9 7 5 11 11 H 1.48494 * 109.46963 * 209.99863 * 9 7 5 12 12 H 1.48500 * 109.46785 * 329.99528 * 9 7 5 13 13 C 1.52998 * 109.47189 * 239.99336 * 2 1 3 14 14 H 1.08999 * 109.70570 * 287.94368 * 13 2 1 15 15 C 1.53629 * 109.66037 * 48.53042 * 13 2 1 16 16 C 1.53049 * 109.23772 * 174.54844 * 15 13 2 17 17 C 1.53036 * 109.53653 * 298.51043 * 16 15 13 18 18 C 1.53187 * 109.31510 * 61.36638 * 17 16 15 19 19 N 1.46922 * 108.77830 * 305.36614 * 18 17 16 20 20 C 1.34780 * 120.63423 * 233.58317 * 19 18 17 21 21 O 1.21512 * 120.00284 * 179.33326 * 20 19 18 22 22 C 1.48191 * 119.99417 * 359.06375 * 20 19 18 23 23 C 1.39032 * 119.68548 * 162.25600 * 22 20 19 24 24 C 1.39453 * 118.95877 * 179.73666 * 23 22 20 25 25 N 1.39185 * 120.83540 * 180.23942 * 24 23 22 26 26 C 1.46500 * 119.99904 * 180.29224 * 25 24 23 27 27 C 1.46496 * 120.00465 * 0.29050 * 25 24 23 28 28 C 1.39423 * 118.32869 * 0.52097 * 24 23 22 29 29 C 1.38232 * 119.26549 * 359.74169 * 28 24 23 30 30 N 1.31641 * 120.99509 * 359.97438 * 29 28 24 31 31 H 1.08997 * 109.46796 * 300.00334 * 1 2 3 32 32 H 1.09003 * 109.46446 * 60.00260 * 1 2 3 33 33 H 1.09000 * 109.46944 * 180.02562 * 1 2 3 34 34 H 0.96995 * 120.00162 * 105.77150 * 4 2 1 35 35 H 0.96991 * 120.00212 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.63425 * 54.56123 * 15 13 2 37 37 H 1.08994 * 109.46135 * 294.42770 * 15 13 2 38 38 H 1.09002 * 109.45540 * 178.49138 * 16 15 13 39 39 H 1.08997 * 109.46208 * 58.53483 * 16 15 13 40 40 H 1.09001 * 109.50174 * 301.41854 * 17 16 15 41 41 H 1.08997 * 109.49583 * 181.32100 * 17 16 15 42 42 H 1.09002 * 109.59132 * 185.57556 * 18 17 16 43 43 H 1.09000 * 109.70228 * 65.22120 * 18 17 16 44 44 H 1.08007 * 120.52607 * 359.97438 * 23 22 20 45 45 H 1.09005 * 109.47315 * 90.00089 * 26 25 24 46 46 H 1.09003 * 109.47674 * 209.99979 * 26 25 24 47 47 H 1.09008 * 109.47413 * 329.99951 * 26 25 24 48 48 H 1.09003 * 109.46934 * 59.99917 * 27 25 24 49 49 H 1.08996 * 109.47764 * 179.97438 * 27 25 24 50 50 H 1.09005 * 109.47142 * 300.00655 * 27 25 24 51 51 H 1.08001 * 120.36607 * 179.70901 * 28 24 23 52 52 H 1.08004 * 119.50044 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.9426 -0.0787 2.4189 6 1 1.5227 0.9129 2.5015 7 6 2.4048 -0.7332 3.5525 8 7 2.3316 -0.1453 4.7277 9 14 3.1306 -2.4485 3.4098 10 1 4.5933 -2.3490 3.1739 11 1 2.8818 -3.1974 4.6678 12 1 2.4934 -3.1627 2.2744 13 6 2.0401 -0.7214 -1.2491 14 1 1.8645 -1.7928 -1.1522 15 6 1.3091 -0.1861 -2.4898 16 6 1.9199 -0.8138 -3.7449 17 6 3.3951 -0.4199 -3.8481 18 6 4.1485 -0.9529 -2.6254 19 7 3.4788 -0.4705 -1.4099 20 6 4.1721 0.1848 -0.4579 21 8 3.6043 0.5894 0.5373 22 6 5.6281 0.4067 -0.6221 23 6 6.2676 1.3754 0.1432 24 6 7.6392 1.5677 -0.0196 25 7 8.3195 2.5231 0.7296 26 6 9.7595 2.7142 0.5391 27 6 7.5959 3.3378 1.7087 28 6 8.3107 0.7828 -0.9561 29 6 7.6028 -0.1561 -1.6829 30 7 6.3089 -0.3183 -1.5025 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 2.3953 -1.5813 1.1222 35 1 2.6549 -0.6025 5.5197 36 1 1.4138 0.8979 -2.5374 37 1 0.2526 -0.4473 -2.4298 38 1 1.3863 -0.4569 -4.6258 39 1 1.8370 -1.8990 -3.6854 40 1 3.4802 0.6662 -3.8828 41 1 3.8234 -0.8479 -4.7544 42 1 5.1768 -0.5918 -2.6438 43 1 4.1437 -2.0428 -2.6371 44 1 5.7116 1.9671 0.8554 45 1 9.9274 3.4649 -0.2332 46 1 10.2087 3.0484 1.4743 47 1 10.2140 1.7714 0.2343 48 1 7.1436 2.6885 2.4584 49 1 8.2896 4.0242 2.1941 50 1 6.8158 3.9066 1.2026 51 1 9.3720 0.9075 -1.1124 52 1 8.1192 -0.7664 -2.4090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490311939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:21 Heat of formation + Delta-G solvation = 62.852759 kcal Electronic energy + Delta-G solvation = -32771.693559 eV Core-core repulsion = 28773.290941 eV Total energy + Delta-G solvation = -3998.402618 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.97710 -40.76100 -38.25701 -37.99664 -36.89929 -34.25534 -33.72708 -32.35237 -32.23503 -31.84108 -29.58974 -29.28245 -26.91530 -26.32322 -25.74976 -24.50457 -23.80098 -23.02625 -21.82899 -21.35326 -20.53834 -19.42341 -18.29884 -17.92914 -17.13868 -16.76883 -16.69606 -16.34409 -16.24083 -16.01094 -15.77600 -15.64139 -15.23069 -15.14269 -14.72659 -14.71255 -14.49471 -14.24598 -14.15694 -13.84812 -13.81933 -13.61179 -13.55606 -13.22867 -13.14486 -13.07678 -12.93881 -12.61456 -12.37859 -12.29414 -12.14401 -11.91998 -11.70243 -11.69037 -11.62599 -11.43171 -11.26000 -10.89941 -10.31310 -10.10291 -9.64000 -9.42948 -8.88101 -8.66949 -7.88633 -5.10807 -0.16666 0.45143 1.27197 1.32399 1.37830 1.94703 2.00870 2.21577 2.53467 2.94739 3.28606 3.43401 3.64454 3.67777 3.85804 3.92326 4.08031 4.09554 4.16651 4.20241 4.28132 4.31431 4.39195 4.40657 4.42647 4.50864 4.67309 4.67753 4.71174 4.75132 4.78452 4.83011 4.86968 4.90297 4.94801 4.99871 5.00683 5.10381 5.16193 5.21581 5.23992 5.35435 5.41906 5.48947 5.57773 5.73642 5.89257 6.05166 6.09509 6.27180 6.33904 6.62348 6.93518 7.21908 7.50114 8.00398 8.19013 9.35947 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008044 B = 0.005293 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.185348 B = 5288.714770 C = 7596.247804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.043 0.957 4 N -0.721 5.721 5 C -0.149 4.149 6 H 0.046 0.954 7 C -0.081 4.081 8 N -0.999 5.999 9 Si 0.945 3.055 10 H -0.301 1.301 11 H -0.296 1.296 12 H -0.260 1.260 13 C 0.143 3.857 14 H 0.064 0.936 15 C -0.119 4.119 16 C -0.115 4.115 17 C -0.127 4.127 18 C 0.064 3.936 19 N -0.593 5.593 20 C 0.519 3.481 21 O -0.494 6.494 22 C 0.111 3.889 23 C -0.211 4.211 24 C 0.238 3.762 25 N -0.628 5.628 26 C 0.085 3.915 27 C 0.088 3.912 28 C -0.229 4.229 29 C 0.130 3.870 30 N -0.502 5.502 31 H 0.027 0.973 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.351 0.649 35 H 0.248 0.752 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.154 0.846 43 H 0.057 0.943 44 H 0.113 0.887 45 H 0.066 0.934 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.035 0.965 49 H 0.109 0.891 50 H 0.050 0.950 51 H 0.172 0.828 52 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.165 2.599 -22.830 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.074 3.926 3 H 0.060 0.940 4 N -0.362 5.362 5 C -0.281 4.281 6 H 0.064 0.936 7 C -0.270 4.270 8 N -0.654 5.654 9 Si 0.776 3.224 10 H -0.229 1.229 11 H -0.223 1.223 12 H -0.185 1.185 13 C 0.039 3.961 14 H 0.082 0.918 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.165 4.165 18 C -0.057 4.057 19 N -0.327 5.327 20 C 0.304 3.696 21 O -0.366 6.366 22 C -0.024 4.024 23 C -0.238 4.238 24 C 0.125 3.875 25 N -0.338 5.338 26 C -0.056 4.056 27 C -0.055 4.055 28 C -0.254 4.254 29 C -0.027 4.027 30 N -0.219 5.219 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.183 0.817 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.170 0.830 43 H 0.076 0.924 44 H 0.131 0.869 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.101 0.899 48 H 0.054 0.946 49 H 0.127 0.873 50 H 0.069 0.931 51 H 0.190 0.810 52 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 14.447 2.534 -22.500 26.858 hybrid contribution 0.566 -0.204 1.687 1.791 sum 15.013 2.330 -20.812 25.767 Atomic orbital electron populations 1.22402 0.97431 1.01265 1.00740 1.20538 0.91687 0.96035 0.84335 0.93974 1.42635 1.73793 1.16134 1.03665 1.18737 1.27426 0.97741 0.84245 0.93627 1.25155 1.04702 1.01816 0.95285 1.69862 1.57580 1.39499 0.98457 0.85514 0.77802 0.82520 0.76564 1.22915 1.22322 1.18532 1.21639 0.80049 0.98801 0.95587 0.91814 1.22029 1.00103 1.00464 0.93124 1.21543 0.95856 1.00838 0.97024 1.21912 0.95741 1.00717 0.98144 1.23188 1.01840 0.98934 0.81768 1.47886 1.08428 1.56006 1.20397 1.18654 0.86262 0.81039 0.83617 1.91257 1.68108 1.48514 1.28769 1.20971 0.94110 0.93592 0.93730 1.21474 0.94638 1.03342 1.04303 1.18163 0.90061 0.88752 0.90477 1.46583 1.09294 1.37456 1.40477 1.22002 0.77338 1.03029 1.03255 1.21751 0.97900 0.94713 0.91144 1.22097 1.02907 1.00325 1.00062 1.23350 0.88710 0.94084 0.96525 1.67457 1.09932 1.26376 1.18135 0.95391 0.90296 0.92968 0.81698 0.94306 0.92239 0.89152 0.89911 0.91422 0.92944 0.88716 0.83035 0.92419 0.86882 0.91503 0.89665 0.89853 0.94618 0.87289 0.93118 0.81032 0.78040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.02 8.67 71.98 0.62 -5.40 16 2 C 0.18 7.86 1.83 44.99 0.08 7.94 16 3 H 0.04 2.10 6.22 -2.39 -0.01 2.08 16 4 N -0.72 -38.23 3.12 -322.93 -1.01 -39.24 16 5 C -0.15 -9.47 8.78 84.03 0.74 -8.73 16 6 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 7 C -0.08 -5.34 5.50 84.86 0.47 -4.87 16 8 N -1.00 -70.22 13.97 21.65 0.30 -69.92 16 9 Si 0.94 52.54 27.74 68.60 1.90 54.45 16 10 H -0.30 -17.03 7.11 99.48 0.71 -16.32 16 11 H -0.30 -16.29 7.11 99.48 0.71 -15.59 16 12 H -0.26 -13.28 6.52 99.48 0.65 -12.63 16 13 C 0.14 4.85 2.62 45.12 0.12 4.97 16 14 H 0.06 2.19 8.12 -2.39 -0.02 2.17 16 15 C -0.12 -2.95 4.46 30.82 0.14 -2.82 16 16 C -0.12 -2.19 5.88 30.62 0.18 -2.01 16 17 C -0.13 -2.50 6.08 30.67 0.19 -2.32 16 18 C 0.06 1.66 5.99 86.36 0.52 2.17 16 19 N -0.59 -20.47 2.97 -797.22 -2.36 -22.83 16 20 C 0.52 21.73 7.39 86.89 0.64 22.37 16 21 O -0.49 -25.55 9.46 -3.75 -0.04 -25.59 16 22 C 0.11 4.01 6.52 41.83 0.27 4.29 16 23 C -0.21 -7.44 8.89 22.75 0.20 -7.23 16 24 C 0.24 6.26 6.57 38.55 0.25 6.51 16 25 N -0.63 -13.47 3.39 -746.69 -2.53 -16.00 16 26 C 0.08 0.99 10.19 127.77 1.30 2.30 16 27 C 0.09 1.96 9.44 127.77 1.21 3.16 16 28 C -0.23 -4.39 9.27 22.55 0.21 -4.18 16 29 C 0.13 2.57 11.17 84.72 0.95 3.52 16 30 N -0.50 -14.12 6.22 -185.21 -1.15 -15.27 16 31 H 0.03 1.20 8.01 -2.39 -0.02 1.18 16 32 H 0.08 2.36 6.45 -2.39 -0.02 2.35 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.35 18.66 5.56 -92.71 -0.52 18.14 16 35 H 0.25 16.74 8.31 -92.71 -0.77 15.97 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.99 6.71 -2.39 -0.02 1.97 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.15 3.92 3.87 -71.24 -0.28 3.65 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 44 H 0.11 4.62 6.58 -2.91 -0.02 4.60 16 45 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.08 0.76 7.92 -2.39 -0.02 0.75 16 47 H 0.08 0.76 6.26 -2.38 -0.01 0.74 16 48 H 0.04 0.99 8.00 -2.39 -0.02 0.97 16 49 H 0.11 1.63 7.79 -2.39 -0.02 1.61 16 50 H 0.05 1.20 7.98 -2.38 -0.02 1.18 16 51 H 0.17 1.89 6.26 -2.91 -0.02 1.87 16 52 H 0.20 2.06 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -87.79 392.15 3.28 -84.51 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.09 Total: 30.24 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 8.08 Total: 19.66 kcal Atomic # 7 Polarization: -156.51 SS G_CDS: -6.76 Total: -163.26 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.04 Total: -25.59 kcal Atomic # 14 Polarization: 52.54 SS G_CDS: 1.90 Total: 54.45 kcal Total: -87.79 3.28 -84.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490311939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.363 kcal (2) G-P(sol) polarization free energy of solvation -87.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds