Wall clock time and date at job start Wed Apr 1 2020 05:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47480 * 2 1 4 4 C 1.52990 * 109.47311 * 239.98631 * 2 1 3 5 5 C 1.50705 * 109.46622 * 65.00787 * 4 2 1 6 6 O 1.21281 * 120.00497 * 359.97438 * 5 4 2 7 7 N 1.34776 * 119.99811 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99915 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47110 * 179.97438 * 8 7 5 10 10 N 1.46900 * 109.47222 * 179.97438 * 9 8 7 11 11 C 1.46900 * 111.00043 * 294.30617 * 10 9 8 12 12 C 1.53245 * 109.33944 * 172.74627 * 11 10 9 13 13 N 1.47083 * 108.51939 * 53.82734 * 12 11 10 14 14 C 1.36936 * 120.87846 * 128.84123 * 13 12 11 15 15 H 1.07997 * 120.00025 * 206.55379 * 14 13 12 16 16 C 1.38810 * 120.00029 * 26.55217 * 14 13 12 17 17 N 1.31619 * 120.00157 * 17.03244 * 16 14 13 18 18 Si 1.86802 * 119.99833 * 197.02719 * 16 14 13 19 19 H 1.48501 * 109.47291 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47006 * 120.00207 * 18 16 14 21 21 H 1.48499 * 109.47213 * 240.00259 * 18 16 14 22 22 C 1.47082 * 118.23701 * 308.81331 * 13 12 11 23 23 C 1.46897 * 111.00036 * 169.99914 * 10 9 8 24 24 C 1.50705 * 109.46436 * 119.99114 * 2 1 3 25 25 C 1.38656 * 120.79081 * 239.99394 * 24 2 1 26 26 C 1.38199 * 119.16489 * 179.97438 * 25 24 2 27 27 N 1.31869 * 120.76299 * 359.97438 * 26 25 24 28 28 C 1.31871 * 121.73000 * 0.02562 * 27 26 25 29 29 C 1.38213 * 120.75987 * 359.97438 * 28 27 26 30 30 H 1.09001 * 109.47382 * 300.01525 * 1 2 3 31 31 H 1.09002 * 109.46515 * 60.00403 * 1 2 3 32 32 H 1.08991 * 109.47643 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47456 * 184.99824 * 4 2 1 34 34 H 1.08996 * 109.47850 * 305.00780 * 4 2 1 35 35 H 0.97001 * 120.00429 * 0.02562 * 7 5 4 36 36 H 1.08998 * 109.47299 * 299.99879 * 8 7 5 37 37 H 1.09001 * 109.47444 * 60.00150 * 8 7 5 38 38 H 1.08998 * 109.47092 * 300.00191 * 9 8 7 39 39 H 1.09004 * 109.46899 * 60.00345 * 9 8 7 40 40 H 1.09003 * 109.49077 * 292.70492 * 11 10 9 41 41 H 1.08994 * 109.49577 * 52.78432 * 11 10 9 42 42 H 1.08997 * 109.62131 * 294.11555 * 12 11 10 43 43 H 1.08994 * 109.62255 * 173.53673 * 12 11 10 44 44 H 0.97001 * 120.00040 * 180.02562 * 17 16 14 45 45 H 1.08999 * 109.62716 * 291.47628 * 22 13 12 46 46 H 1.09002 * 109.78584 * 170.99594 * 22 13 12 47 47 H 1.09000 * 109.49641 * 307.21528 * 23 10 9 48 48 H 1.08998 * 109.49202 * 67.29931 * 23 10 9 49 49 H 1.08006 * 120.41297 * 359.96574 * 25 24 2 50 50 H 1.07997 * 119.61963 * 180.02562 * 26 25 24 51 51 H 1.07994 * 119.62517 * 179.97438 * 28 27 26 52 52 H 1.08001 * 120.41818 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7215 -1.2490 5 6 1.6414 0.0567 -2.4765 6 8 1.0111 1.0867 -2.3634 7 7 1.9846 -0.3925 -3.7000 8 6 1.5967 0.3638 -4.8933 9 6 2.1068 -0.3577 -6.1424 10 7 1.7173 0.4003 -7.3390 11 6 0.2576 0.4102 -7.5039 12 6 -0.1171 1.3551 -8.6507 13 7 0.6414 0.9609 -9.8476 14 6 0.0084 0.7533 -11.0440 15 1 0.4388 0.0833 -11.7735 16 6 -1.1865 1.4041 -11.3191 17 7 -1.5434 2.4530 -10.6086 18 14 -2.2878 0.7912 -12.6979 19 1 -1.6650 -0.3946 -13.3390 20 1 -3.6127 0.4145 -12.1428 21 1 -2.4617 1.8662 -13.7075 22 6 2.0978 0.7962 -9.7255 23 6 2.3854 -0.1267 -8.5365 24 6 2.0322 -0.7103 1.2307 25 6 2.8303 -0.0522 2.1540 26 6 3.2717 -0.7358 3.2710 27 7 2.9417 -1.9980 3.4635 28 6 2.1846 -2.6553 2.6069 29 6 1.7062 -2.0370 1.4671 30 1 -0.3634 0.5141 0.8898 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3634 -1.0275 0.0005 33 1 3.1263 -0.7997 -1.2053 34 1 1.6054 -1.7200 -1.2949 35 1 2.4878 -1.2168 -3.7905 36 1 0.5104 0.4420 -4.9366 37 1 2.0314 1.3623 -4.8479 38 1 3.1931 -0.4356 -6.0988 39 1 1.6724 -1.3564 -6.1880 40 1 -0.0892 -0.5972 -7.7345 41 1 -0.2103 0.7541 -6.5816 42 1 0.1354 2.3797 -8.3780 43 1 -1.1855 1.2796 -8.8529 44 1 -2.3785 2.9075 -10.8006 45 1 2.5632 1.7672 -9.5563 46 1 2.4968 0.3530 -10.6379 47 1 3.4605 -0.1720 -8.3630 48 1 2.0089 -1.1264 -8.7527 49 1 3.1037 0.9816 2.0019 50 1 3.8934 -0.2303 3.9951 51 1 1.9356 -3.6885 2.7981 52 1 1.0862 -2.5804 0.7695 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490493780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:17 Heat of formation + Delta-G solvation = 23.253737 kcal Electronic energy + Delta-G solvation = -29444.118793 eV Core-core repulsion = 25443.999033 eV Total energy + Delta-G solvation = -4000.119760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.82492 -39.88684 -38.27969 -36.25714 -35.32085 -34.00106 -31.75068 -31.56747 -31.26635 -29.96992 -29.42841 -27.78783 -25.81050 -24.65154 -23.82434 -23.29092 -22.61707 -21.53749 -21.21702 -20.21414 -19.13594 -17.76246 -16.88622 -16.72750 -16.56741 -16.11610 -15.96538 -15.85232 -15.00291 -14.89449 -14.52094 -14.48213 -14.27787 -14.04957 -13.94740 -13.65425 -13.54767 -13.45016 -13.34551 -12.98613 -12.78252 -12.56293 -12.24698 -11.84051 -11.71300 -11.65508 -11.45961 -11.28777 -11.20181 -11.08017 -10.77282 -10.46156 -10.33712 -10.07725 -10.06252 -9.89827 -9.82397 -9.77428 -9.62444 -9.56160 -9.14085 -8.52653 -7.92425 -6.68516 -5.79190 -3.20576 0.72688 0.83171 2.45410 2.91594 3.36072 3.41295 3.43944 3.45964 4.05060 4.09828 4.21668 4.39815 4.49368 4.49954 4.65419 4.69178 4.70838 4.74879 4.93177 5.02721 5.13416 5.17901 5.24410 5.30383 5.38015 5.38308 5.39903 5.47384 5.51851 5.63518 5.73456 5.78990 5.87257 5.91798 5.99396 6.01728 6.07445 6.10034 6.17741 6.28040 6.29633 6.33021 6.51160 6.65942 6.90061 7.21286 7.29122 7.51128 7.57411 7.61102 7.67439 7.79977 8.05027 8.42084 9.19946 9.83333 10.41682 11.29639 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026951 B = 0.001554 C = 0.001522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.668950 B =18011.899139 C =18389.417658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.038 4.038 3 H 0.092 0.908 4 C -0.133 4.133 5 C 0.512 3.488 6 O -0.533 6.533 7 N -0.730 5.730 8 C 0.120 3.880 9 C 0.045 3.955 10 N -0.529 5.529 11 C 0.031 3.969 12 C 0.178 3.822 13 N -0.595 5.595 14 C -0.253 4.253 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.902 5.902 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.148 3.852 23 C 0.046 3.954 24 C -0.030 4.030 25 C -0.170 4.170 26 C 0.099 3.901 27 N -0.492 5.492 28 C 0.098 3.902 29 C -0.169 4.169 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.398 0.602 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.026 0.974 41 H 0.064 0.936 42 H 0.027 0.973 43 H 0.089 0.911 44 H 0.254 0.746 45 H 0.026 0.974 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.028 0.972 49 H 0.135 0.865 50 H 0.155 0.845 51 H 0.155 0.845 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.732 -9.926 24.844 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.057 4.057 3 H 0.110 0.890 4 C -0.174 4.174 5 C 0.298 3.702 6 O -0.409 6.409 7 N -0.382 5.382 8 C -0.003 4.003 9 C -0.084 4.084 10 N -0.255 5.255 11 C -0.098 4.098 12 C 0.052 3.948 13 N -0.319 5.319 14 C -0.382 4.382 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.547 5.547 18 Si 0.732 3.268 19 H -0.203 1.203 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.021 3.979 23 C -0.083 4.083 24 C -0.038 4.038 25 C -0.189 4.189 26 C -0.057 4.057 27 N -0.201 5.201 28 C -0.058 4.058 29 C -0.189 4.189 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.232 0.768 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.046 0.954 49 H 0.153 0.847 50 H 0.172 0.828 51 H 0.172 0.828 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.571 -9.014 25.660 28.832 hybrid contribution -0.885 -1.129 -1.604 2.151 sum 8.686 -10.142 24.056 27.514 Atomic orbital electron populations 1.21974 0.93008 1.01988 1.03776 1.19934 0.97244 0.99363 0.89116 0.88954 1.21733 1.03089 1.00263 0.92274 1.20516 0.79438 0.85814 0.84438 1.90711 1.39360 1.24389 1.86489 1.46002 1.58084 1.27861 1.06205 1.21392 1.00755 0.95784 0.82383 1.22196 1.00282 0.95031 0.90892 1.61871 1.09190 1.52615 1.01800 1.23005 0.85962 1.00040 1.00761 1.20870 0.97837 0.93451 0.82686 1.44130 1.00300 1.80779 1.06661 1.19232 1.04552 1.20014 0.94427 0.91591 1.25028 1.00505 0.95692 0.98502 1.70039 1.23509 1.18767 1.42369 0.86234 0.80740 0.78221 0.81638 1.20329 1.21590 1.21687 1.20973 0.86876 0.96042 0.93977 1.22624 0.96937 0.97389 0.91349 1.20362 0.94047 0.93873 0.95555 1.22136 0.99414 1.01676 0.95707 1.22778 0.96799 0.90374 0.95791 1.67682 1.12515 1.09292 1.30591 1.22775 0.93007 0.99967 0.90058 1.22039 1.01994 0.95335 0.99502 0.92598 0.89685 0.92936 0.88731 0.88640 0.76834 0.91045 0.90436 0.90920 0.95049 0.95620 0.91792 0.95438 0.89298 0.93629 0.95608 0.92543 0.91987 0.95354 0.84676 0.82773 0.82808 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.76 37.16 0.33 -0.92 16 2 C -0.04 -0.28 2.24 -91.77 -0.21 -0.49 16 3 H 0.09 0.78 7.76 -51.93 -0.40 0.37 16 4 C -0.13 -0.87 4.93 -27.89 -0.14 -1.01 16 5 C 0.51 5.22 7.55 -10.98 -0.08 5.14 16 6 O -0.53 -7.60 13.97 5.56 0.08 -7.52 16 7 N -0.73 -6.80 5.56 -60.29 -0.33 -7.13 16 8 C 0.12 1.50 5.61 -4.04 -0.02 1.47 16 9 C 0.05 0.57 5.08 -3.82 -0.02 0.55 16 10 N -0.53 -8.99 4.63 -234.32 -1.08 -10.07 16 11 C 0.03 0.60 5.46 -3.70 -0.02 0.58 16 12 C 0.18 4.28 5.42 -3.60 -0.02 4.26 16 13 N -0.60 -15.00 3.04 -172.01 -0.52 -15.52 16 14 C -0.25 -6.93 9.63 -15.06 -0.15 -7.08 16 15 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 16 C 0.00 0.03 4.93 -17.43 -0.09 -0.05 16 17 N -0.90 -26.26 11.15 55.49 0.62 -25.64 16 18 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.15 3.10 6.69 -3.60 -0.02 3.08 16 23 C 0.05 0.80 5.62 -3.70 -0.02 0.78 16 24 C -0.03 -0.21 4.80 -104.31 -0.50 -0.71 16 25 C -0.17 -1.15 9.76 -39.44 -0.39 -1.53 16 26 C 0.10 0.72 11.18 -17.55 -0.20 0.52 16 27 N -0.49 -4.34 10.36 -13.25 -0.14 -4.47 16 28 C 0.10 0.70 11.18 -17.54 -0.20 0.50 16 29 C -0.17 -1.08 8.89 -39.44 -0.35 -1.43 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.91 5.95 -51.93 -0.31 0.60 16 32 H 0.05 0.37 7.48 -51.93 -0.39 -0.02 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.46 7.67 -51.93 -0.40 0.06 16 35 H 0.40 2.50 8.47 -40.82 -0.35 2.16 16 36 H 0.07 1.02 6.40 -51.93 -0.33 0.69 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.80 7.97 -51.93 -0.41 0.38 16 39 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 1.13 6.16 -51.93 -0.32 0.81 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.09 2.38 6.12 -51.93 -0.32 2.06 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 47 H 0.06 0.89 7.99 -51.93 -0.41 0.48 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.14 0.70 8.01 -52.48 -0.42 0.27 16 50 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 51 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 52 H 0.13 0.61 7.35 -52.49 -0.39 0.23 16 LS Contribution 410.04 15.07 6.18 6.18 Total: -1.00 -33.33 410.04 -10.96 -44.28 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.64 Total: -0.35 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -2.09 Total: 3.66 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -1.46 Total: -62.84 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.08 Total: -7.52 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.33 -10.96 -44.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490493780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.537 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds