Wall clock time and date at job start Wed Apr 1 2020 05:08:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08996 * 109.47480 * 2 1
4 4 C 1.52990 * 109.47311 * 239.98631 * 2 1 3
5 5 C 1.50705 * 109.46622 * 65.00787 * 4 2 1
6 6 O 1.21281 * 120.00497 * 359.97438 * 5 4 2
7 7 N 1.34776 * 119.99811 * 180.02562 * 5 4 2
8 8 C 1.46503 * 119.99915 * 179.97438 * 7 5 4
9 9 C 1.53004 * 109.47110 * 179.97438 * 8 7 5
10 10 N 1.46900 * 109.47222 * 179.97438 * 9 8 7
11 11 C 1.46900 * 111.00043 * 294.30617 * 10 9 8
12 12 C 1.53245 * 109.33944 * 172.74627 * 11 10 9
13 13 N 1.47083 * 108.51939 * 53.82734 * 12 11 10
14 14 C 1.36936 * 120.87846 * 128.84123 * 13 12 11
15 15 H 1.07997 * 120.00025 * 206.55379 * 14 13 12
16 16 C 1.38810 * 120.00029 * 26.55217 * 14 13 12
17 17 N 1.31619 * 120.00157 * 17.03244 * 16 14 13
18 18 Si 1.86802 * 119.99833 * 197.02719 * 16 14 13
19 19 H 1.48501 * 109.47291 * 0.02562 * 18 16 14
20 20 H 1.48503 * 109.47006 * 120.00207 * 18 16 14
21 21 H 1.48499 * 109.47213 * 240.00259 * 18 16 14
22 22 C 1.47082 * 118.23701 * 308.81331 * 13 12 11
23 23 C 1.46897 * 111.00036 * 169.99914 * 10 9 8
24 24 C 1.50705 * 109.46436 * 119.99114 * 2 1 3
25 25 C 1.38656 * 120.79081 * 239.99394 * 24 2 1
26 26 C 1.38199 * 119.16489 * 179.97438 * 25 24 2
27 27 N 1.31869 * 120.76299 * 359.97438 * 26 25 24
28 28 C 1.31871 * 121.73000 * 0.02562 * 27 26 25
29 29 C 1.38213 * 120.75987 * 359.97438 * 28 27 26
30 30 H 1.09001 * 109.47382 * 300.01525 * 1 2 3
31 31 H 1.09002 * 109.46515 * 60.00403 * 1 2 3
32 32 H 1.08991 * 109.47643 * 180.02562 * 1 2 3
33 33 H 1.08994 * 109.47456 * 184.99824 * 4 2 1
34 34 H 1.08996 * 109.47850 * 305.00780 * 4 2 1
35 35 H 0.97001 * 120.00429 * 0.02562 * 7 5 4
36 36 H 1.08998 * 109.47299 * 299.99879 * 8 7 5
37 37 H 1.09001 * 109.47444 * 60.00150 * 8 7 5
38 38 H 1.08998 * 109.47092 * 300.00191 * 9 8 7
39 39 H 1.09004 * 109.46899 * 60.00345 * 9 8 7
40 40 H 1.09003 * 109.49077 * 292.70492 * 11 10 9
41 41 H 1.08994 * 109.49577 * 52.78432 * 11 10 9
42 42 H 1.08997 * 109.62131 * 294.11555 * 12 11 10
43 43 H 1.08994 * 109.62255 * 173.53673 * 12 11 10
44 44 H 0.97001 * 120.00040 * 180.02562 * 17 16 14
45 45 H 1.08999 * 109.62716 * 291.47628 * 22 13 12
46 46 H 1.09002 * 109.78584 * 170.99594 * 22 13 12
47 47 H 1.09000 * 109.49641 * 307.21528 * 23 10 9
48 48 H 1.08998 * 109.49202 * 67.29931 * 23 10 9
49 49 H 1.08006 * 120.41297 * 359.96574 * 25 24 2
50 50 H 1.07997 * 119.61963 * 180.02562 * 26 25 24
51 51 H 1.07994 * 119.62517 * 179.97438 * 28 27 26
52 52 H 1.08001 * 120.41818 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7215 -1.2490
5 6 1.6414 0.0567 -2.4765
6 8 1.0111 1.0867 -2.3634
7 7 1.9846 -0.3925 -3.7000
8 6 1.5967 0.3638 -4.8933
9 6 2.1068 -0.3577 -6.1424
10 7 1.7173 0.4003 -7.3390
11 6 0.2576 0.4102 -7.5039
12 6 -0.1171 1.3551 -8.6507
13 7 0.6414 0.9609 -9.8476
14 6 0.0084 0.7533 -11.0440
15 1 0.4388 0.0833 -11.7735
16 6 -1.1865 1.4041 -11.3191
17 7 -1.5434 2.4530 -10.6086
18 14 -2.2878 0.7912 -12.6979
19 1 -1.6650 -0.3946 -13.3390
20 1 -3.6127 0.4145 -12.1428
21 1 -2.4617 1.8662 -13.7075
22 6 2.0978 0.7962 -9.7255
23 6 2.3854 -0.1267 -8.5365
24 6 2.0322 -0.7103 1.2307
25 6 2.8303 -0.0522 2.1540
26 6 3.2717 -0.7358 3.2710
27 7 2.9417 -1.9980 3.4635
28 6 2.1846 -2.6553 2.6069
29 6 1.7062 -2.0370 1.4671
30 1 -0.3634 0.5141 0.8898
31 1 -0.3632 0.5138 -0.8901
32 1 -0.3634 -1.0275 0.0005
33 1 3.1263 -0.7997 -1.2053
34 1 1.6054 -1.7200 -1.2949
35 1 2.4878 -1.2168 -3.7905
36 1 0.5104 0.4420 -4.9366
37 1 2.0314 1.3623 -4.8479
38 1 3.1931 -0.4356 -6.0988
39 1 1.6724 -1.3564 -6.1880
40 1 -0.0892 -0.5972 -7.7345
41 1 -0.2103 0.7541 -6.5816
42 1 0.1354 2.3797 -8.3780
43 1 -1.1855 1.2796 -8.8529
44 1 -2.3785 2.9075 -10.8006
45 1 2.5632 1.7672 -9.5563
46 1 2.4968 0.3530 -10.6379
47 1 3.4605 -0.1720 -8.3630
48 1 2.0089 -1.1264 -8.7527
49 1 3.1037 0.9816 2.0019
50 1 3.8934 -0.2303 3.9951
51 1 1.9356 -3.6885 2.7981
52 1 1.0862 -2.5804 0.7695
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001490493780.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:08:15
Heat of formation + Delta-G solvation = 0.374422 kcal
Electronic energy + Delta-G solvation = -29445.110914 eV
Core-core repulsion = 25443.999033 eV
Total energy + Delta-G solvation = -4001.111882 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.29 seconds
Orbital eigenvalues (eV)
-41.40423 -40.66086 -39.72752 -37.11639 -36.46002 -35.37862 -33.32232 -32.20996
-31.91027 -31.65784 -30.56842 -28.78564 -27.30774 -25.35419 -24.85263 -24.32116
-24.23697 -22.69088 -22.00872 -20.98685 -20.76598 -18.76080 -18.38281 -17.43552
-17.22979 -17.12876 -16.78545 -16.66840 -16.38615 -16.05337 -15.84945 -15.45179
-15.30066 -15.23788 -15.00025 -14.90977 -14.69053 -14.60034 -14.31274 -14.11675
-13.92633 -13.44736 -13.21592 -13.01560 -12.83128 -12.72670 -12.65184 -12.62159
-12.38450 -12.27280 -12.19797 -12.03293 -11.86043 -11.75533 -11.56089 -11.42150
-10.84736 -10.60760 -10.46731 -10.36054 -10.05449 -10.03576 -9.30319 -8.69575
-7.88486 -5.33369 0.25327 0.31869 1.45396 1.46900 1.57723 1.67655
2.09709 2.50111 2.90720 3.08947 3.27360 3.53490 3.65830 3.67175
3.69055 3.86605 3.94258 4.07888 4.14981 4.19977 4.25329 4.28269
4.29886 4.34509 4.46823 4.47369 4.55025 4.64769 4.66343 4.70677
4.74147 4.79757 4.82701 4.92113 4.94588 4.95092 5.02023 5.04893
5.10189 5.16017 5.20387 5.33711 5.36734 5.45904 5.54097 5.60742
5.66885 5.83225 6.13667 6.23511 6.36383 6.59165 7.08308 7.12108
7.31128 7.83189 8.37286 9.18551
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.026951 B = 0.001554 C = 0.001522
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1038.668950 B =18011.899139 C =18389.417658
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.033 4.033
3 H 0.077 0.923
4 C -0.123 4.123
5 C 0.508 3.492
6 O -0.579 6.579
7 N -0.716 5.716
8 C 0.130 3.870
9 C 0.054 3.946
10 N -0.544 5.544
11 C 0.051 3.949
12 C 0.184 3.816
13 N -0.614 5.614
14 C -0.263 4.263
15 H 0.070 0.930
16 C -0.053 4.053
17 N -0.937 5.937
18 Si 0.969 3.031
19 H -0.265 1.265
20 H -0.291 1.291
21 H -0.293 1.293
22 C 0.140 3.860
23 C 0.058 3.942
24 C -0.035 4.035
25 C -0.175 4.175
26 C 0.088 3.912
27 N -0.520 5.520
28 C 0.088 3.912
29 C -0.166 4.166
30 H 0.051 0.949
31 H 0.057 0.943
32 H 0.067 0.933
33 H 0.116 0.884
34 H 0.122 0.878
35 H 0.417 0.583
36 H 0.048 0.952
37 H 0.057 0.943
38 H 0.102 0.898
39 H 0.046 0.954
40 H 0.023 0.977
41 H 0.075 0.925
42 H -0.005 1.005
43 H 0.055 0.945
44 H 0.250 0.750
45 H 0.014 0.986
46 H 0.063 0.937
47 H 0.101 0.899
48 H 0.029 0.971
49 H 0.146 0.854
50 H 0.171 0.829
51 H 0.174 0.826
52 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.336 -12.746 25.630 30.788
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.051 4.051
3 H 0.095 0.905
4 C -0.163 4.163
5 C 0.296 3.704
6 O -0.459 6.459
7 N -0.369 5.369
8 C 0.005 3.995
9 C -0.074 4.074
10 N -0.269 5.269
11 C -0.078 4.078
12 C 0.058 3.942
13 N -0.338 5.338
14 C -0.393 4.393
15 H 0.088 0.912
16 C -0.249 4.249
17 N -0.584 5.584
18 Si 0.797 3.203
19 H -0.189 1.189
20 H -0.217 1.217
21 H -0.220 1.220
22 C 0.015 3.985
23 C -0.070 4.070
24 C -0.043 4.043
25 C -0.195 4.195
26 C -0.068 4.068
27 N -0.230 5.230
28 C -0.068 4.068
29 C -0.185 4.185
30 H 0.070 0.930
31 H 0.076 0.924
32 H 0.086 0.914
33 H 0.134 0.866
34 H 0.140 0.860
35 H 0.254 0.746
36 H 0.067 0.933
37 H 0.075 0.925
38 H 0.120 0.880
39 H 0.065 0.935
40 H 0.041 0.959
41 H 0.093 0.907
42 H 0.013 0.987
43 H 0.073 0.927
44 H 0.059 0.941
45 H 0.032 0.968
46 H 0.081 0.919
47 H 0.119 0.881
48 H 0.047 0.953
49 H 0.164 0.836
50 H 0.188 0.812
51 H 0.191 0.809
52 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges 11.233 -11.888 26.458 31.105
hybrid contribution -1.321 -0.205 -1.815 2.254
sum 9.912 -12.093 24.643 29.185
Atomic orbital electron populations
1.21913 0.93862 1.02470 1.02210 1.19818 0.96452 0.98904 0.89973
0.90455 1.21738 1.04486 1.00484 0.89551 1.21199 0.78376 0.85361
0.85430 1.90709 1.41443 1.26627 1.87134 1.45818 1.57875 1.28201
1.05051 1.21073 0.99194 0.95433 0.83791 1.22196 1.02009 0.94785
0.88387 1.61750 1.07337 1.54434 1.03409 1.22597 0.88089 0.98230
0.98918 1.20605 0.96001 0.93140 0.84426 1.44414 1.02269 1.80842
1.06303 1.19595 1.04912 1.19559 0.95212 0.91207 1.25820 1.01946
0.95943 1.01148 1.70207 1.23725 1.20157 1.44287 0.85187 0.78598
0.77828 0.78704 1.18884 1.21733 1.21970 1.21172 0.84321 0.96561
0.96455 1.22462 0.99105 0.95820 0.89659 1.20341 0.94355 0.94255
0.95319 1.22316 0.99322 1.02282 0.95567 1.23089 0.97099 0.90227
0.96384 1.67691 1.13557 1.10111 1.31660 1.23166 0.92696 1.00908
0.90059 1.22236 1.01674 0.95037 0.99570 0.92979 0.92391 0.91389
0.86563 0.85991 0.74569 0.93338 0.92498 0.88017 0.93537 0.95870
0.90676 0.98679 0.92665 0.94122 0.96771 0.91852 0.88119 0.95308
0.83592 0.81192 0.80903 0.82705
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.33 8.76 71.98 0.63 -1.70 16
2 C -0.03 -0.43 2.24 -11.54 -0.03 -0.46 16
3 H 0.08 1.27 7.76 -2.39 -0.02 1.25 16
4 C -0.12 -1.26 4.93 29.85 0.15 -1.11 16
5 C 0.51 9.56 7.55 87.66 0.66 10.22 16
6 O -0.58 -16.63 13.97 -3.03 -0.04 -16.68 16
7 N -0.72 -11.53 5.56 -463.04 -2.57 -14.10 16
8 C 0.13 3.03 5.61 86.38 0.48 3.52 16
9 C 0.05 1.19 5.08 86.30 0.44 1.63 16
10 N -0.54 -17.47 4.63 -895.25 -4.14 -21.62 16
11 C 0.05 1.95 5.46 86.39 0.47 2.42 16
12 C 0.18 9.22 5.42 86.35 0.47 9.69 16
13 N -0.61 -31.42 3.04 -698.13 -2.12 -33.54 16
14 C -0.26 -14.58 9.63 84.03 0.81 -13.77 16
15 H 0.07 3.74 7.88 -2.91 -0.02 3.71 16
16 C -0.05 -3.02 4.93 84.86 0.42 -2.60 16
17 N -0.94 -56.58 11.15 21.65 0.24 -56.34 16
18 Si 0.97 45.11 29.59 68.60 2.03 47.14 16
19 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16
20 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
21 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16
22 C 0.14 5.79 6.69 86.35 0.58 6.37 16
23 C 0.06 1.85 5.62 86.38 0.49 2.33 16
24 C -0.03 -0.41 4.80 -19.66 -0.09 -0.51 16
25 C -0.18 -2.13 9.76 22.36 0.22 -1.91 16
26 C 0.09 1.18 11.18 84.68 0.95 2.12 16
27 N -0.52 -8.49 10.36 -195.85 -2.03 -10.52 16
28 C 0.09 1.07 11.18 84.68 0.95 2.02 16
29 C -0.17 -1.67 8.89 22.36 0.20 -1.48 16
30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16
31 H 0.06 1.27 5.95 -2.39 -0.01 1.25 16
32 H 0.07 0.83 7.48 -2.39 -0.02 0.81 16
33 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16
34 H 0.12 0.66 7.67 -2.39 -0.02 0.64 16
35 H 0.42 3.56 8.47 -92.71 -0.79 2.77 16
36 H 0.05 1.37 6.40 -2.39 -0.02 1.35 16
37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16
38 H 0.10 1.72 7.97 -2.39 -0.02 1.71 16
39 H 0.05 0.94 8.12 -2.38 -0.02 0.92 16
40 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16
41 H 0.08 2.68 6.16 -2.39 -0.01 2.67 16
42 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16
43 H 0.06 3.10 6.12 -2.39 -0.01 3.09 16
44 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16
45 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16
46 H 0.06 2.47 7.96 -2.39 -0.02 2.45 16
47 H 0.10 2.45 7.99 -2.39 -0.02 2.43 16
48 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16
49 H 0.15 1.35 8.01 -2.91 -0.02 1.32 16
50 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16
51 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16
52 H 0.16 0.84 7.35 -2.91 -0.02 0.81 16
Total: -1.00 -75.92 410.04 -0.73 -76.65
By element:
Atomic # 1 Polarization: 12.11 SS G_CDS: 0.12 Total: 12.24 kcal
Atomic # 6 Polarization: 8.99 SS G_CDS: 7.78 Total: 16.77 kcal
Atomic # 7 Polarization: -125.49 SS G_CDS: -10.63 Total: -136.12 kcal
Atomic # 8 Polarization: -16.63 SS G_CDS: -0.04 Total: -16.68 kcal
Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal
Total: -75.92 -0.73 -76.65 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001490493780.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.022 kcal
(2) G-P(sol) polarization free energy of solvation -75.916 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.106 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.732 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.648 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.374 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.29 seconds