Wall clock time and date at job start Wed Apr 1 2020 04:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47034 * 2 1 4 4 C 1.53001 * 109.46917 * 240.00209 * 2 1 3 5 5 C 1.50696 * 109.47583 * 65.00202 * 4 2 1 6 6 C 1.39873 * 126.03663 * 270.00316 * 5 4 2 7 7 N 1.30841 * 108.20015 * 179.97438 * 6 5 4 8 8 N 1.40086 * 108.20707 * 359.97438 * 7 6 5 9 9 C 1.46497 * 126.03867 * 179.97438 * 8 7 6 10 10 C 1.34947 * 107.92225 * 0.02562 * 8 7 6 11 11 C 1.50701 * 109.47137 * 119.99946 * 2 1 3 12 12 O 1.21281 * 120.00008 * 120.00034 * 11 2 1 13 13 N 1.34771 * 120.00135 * 299.99997 * 11 2 1 14 14 C 1.46496 * 119.99933 * 180.02562 * 13 11 2 15 15 H 1.08999 * 115.55587 * 9.41347 * 14 13 11 16 16 C 1.53035 * 117.50229 * 223.72743 * 14 13 11 17 17 C 1.52822 * 117.50010 * 155.10726 * 14 13 11 18 18 C 1.53184 * 117.71484 * 359.85265 * 17 14 13 19 19 C 1.53346 * 108.76893 * 158.89472 * 18 17 14 20 20 N 1.46844 * 108.81521 * 51.30902 * 19 18 17 21 21 C 1.36935 * 120.38306 * 123.08167 * 20 19 18 22 22 H 1.08000 * 119.99965 * 208.91812 * 21 20 19 23 23 C 1.38814 * 120.00453 * 28.91335 * 21 20 19 24 24 N 1.31618 * 119.99576 * 17.84188 * 23 21 20 25 25 Si 1.86802 * 120.00288 * 197.83872 * 23 21 20 26 26 H 1.48499 * 109.47013 * 60.00199 * 25 23 21 27 27 H 1.48501 * 109.46892 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47097 * 300.00053 * 25 23 21 29 29 C 1.46850 * 119.23254 * 303.09612 * 20 19 18 30 30 C 1.53194 * 117.70969 * 215.09858 * 17 14 13 31 31 H 1.08996 * 109.46753 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46951 * 300.00152 * 1 2 3 33 33 H 1.08997 * 109.47217 * 59.99792 * 1 2 3 34 34 H 1.08996 * 109.47155 * 304.99462 * 4 2 1 35 35 H 1.09008 * 109.46793 * 185.00073 * 4 2 1 36 36 H 1.08000 * 125.89955 * 359.97438 * 6 5 4 37 37 H 1.09003 * 109.46805 * 90.02311 * 9 8 7 38 38 H 1.08989 * 109.47422 * 210.02719 * 9 8 7 39 39 H 1.09002 * 109.47124 * 330.02907 * 9 8 7 40 40 H 1.08002 * 126.12615 * 179.97438 * 10 8 7 41 41 H 0.97005 * 119.99764 * 0.02562 * 13 11 2 42 42 H 1.09000 * 117.50242 * 359.97438 * 16 14 13 43 43 H 1.09002 * 117.50456 * 145.01453 * 16 14 13 44 44 H 1.09002 * 109.58530 * 278.67800 * 18 17 14 45 45 H 1.08991 * 109.58496 * 39.10458 * 18 17 14 46 46 H 1.09002 * 109.58084 * 291.50628 * 19 18 17 47 47 H 1.09001 * 109.58074 * 171.10673 * 19 18 17 48 48 H 0.96998 * 119.99856 * 179.97438 * 24 23 21 49 49 H 1.09004 * 109.58299 * 297.10872 * 29 20 19 50 50 H 1.08999 * 109.57860 * 176.71021 * 29 20 19 51 51 H 1.09001 * 109.58633 * 320.90008 * 30 17 14 52 52 H 1.08998 * 109.59009 * 81.32567 * 30 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4766 6 6 0.4572 -0.1027 -3.2037 7 7 0.4700 0.7481 -4.1976 8 7 1.6642 1.4776 -4.1340 9 6 2.0792 2.5341 -5.0601 10 6 2.3653 1.0345 -3.0695 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6965 1.1192 13 7 1.7068 -0.2500 2.4545 14 6 2.1956 -0.9402 3.6507 15 1 2.9412 -1.7155 3.4744 16 6 1.2029 -1.1615 4.7942 17 6 2.3169 -0.1236 4.9366 18 6 1.9227 1.3556 4.8811 19 6 1.6090 1.8364 6.3030 20 7 2.7270 1.4733 7.1832 21 6 3.3839 2.4363 7.9016 22 1 4.4242 2.3024 8.1589 23 6 2.7129 3.5846 8.2990 24 7 1.3970 3.6085 8.3065 25 14 3.6775 5.0960 8.8231 26 1 4.5332 5.5517 7.6982 27 1 2.7341 6.1797 9.1985 28 1 4.5320 4.7580 9.9896 29 6 3.1324 0.0654 7.2837 30 6 3.4772 -0.4512 5.8817 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8899 34 1 1.6054 -1.7198 -1.2952 35 1 3.1263 -0.7994 -1.2056 36 1 -0.3315 -0.8067 -2.9828 37 1 1.7224 3.4975 -4.6957 38 1 3.1668 2.5514 -5.1278 39 1 1.6569 2.3396 -6.0460 40 1 3.3313 1.3953 -2.7483 41 1 1.1488 0.5385 2.5435 42 1 0.1864 -0.7930 4.6566 43 1 1.2956 -2.0822 5.3702 44 1 2.7479 1.9386 4.4719 45 1 1.0408 1.4753 4.2519 46 1 0.6954 1.3588 6.6569 47 1 1.4811 2.9189 6.3028 48 1 0.9280 4.4108 8.5846 49 1 2.3132 -0.5220 7.6983 50 1 4.0070 -0.0176 7.9290 51 1 3.6267 -1.5304 5.9164 52 1 4.3861 0.0344 5.5266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490605027.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:23 Heat of formation + Delta-G solvation = 58.690513 kcal Electronic energy + Delta-G solvation = -30202.054182 eV Core-core repulsion = 26203.471076 eV Total energy + Delta-G solvation = -3998.583106 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.16290 -41.15170 -39.79908 -37.14013 -36.07192 -34.53160 -33.78639 -33.10516 -31.72874 -31.22964 -29.85520 -28.31809 -26.76201 -26.21966 -24.80860 -24.01329 -23.03310 -22.16376 -21.93677 -21.24871 -20.54071 -19.78028 -18.45192 -18.16524 -17.43184 -17.17885 -16.79313 -16.28603 -16.23867 -15.72517 -15.46926 -15.34065 -15.25483 -14.93562 -14.76734 -14.59024 -14.29143 -14.10044 -13.78300 -13.69707 -13.62055 -13.31262 -13.29122 -13.06108 -12.98498 -12.90859 -12.82841 -12.54881 -12.48129 -12.31570 -12.10393 -11.99668 -11.95997 -11.76287 -11.43132 -11.33639 -11.23625 -10.82307 -10.61207 -10.45395 -10.31871 -9.60468 -9.25458 -8.60047 -7.84931 -5.30729 0.98628 1.47710 1.49352 1.56374 1.63922 1.72849 1.81575 2.22429 2.52782 2.98993 3.29618 3.61871 3.68039 3.78712 3.86961 3.90613 3.97627 4.02841 4.10048 4.14845 4.16893 4.36209 4.45130 4.47901 4.55123 4.56716 4.68305 4.71285 4.73328 4.73769 4.87529 4.91807 4.93689 4.95803 4.99327 5.02584 5.03924 5.12014 5.24326 5.25920 5.31204 5.33392 5.39278 5.41835 5.54886 5.59397 5.67309 5.75128 5.80655 6.17525 6.42702 6.58754 6.77690 7.18313 7.28612 7.90577 8.41507 9.19854 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013640 B = 0.002095 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.234130 B =13362.774711 C =14620.206082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.108 0.892 4 C -0.010 4.010 5 C -0.243 4.243 6 C 0.049 3.951 7 N -0.337 5.337 8 N -0.383 5.383 9 C 0.093 3.907 10 C 0.059 3.941 11 C 0.520 3.480 12 O -0.580 6.580 13 N -0.691 5.691 14 C 0.088 3.912 15 H 0.125 0.875 16 C -0.172 4.172 17 C -0.117 4.117 18 C -0.087 4.087 19 C 0.179 3.821 20 N -0.608 5.608 21 C -0.264 4.264 22 H 0.062 0.938 23 C -0.049 4.049 24 N -0.932 5.932 25 Si 0.964 3.036 26 H -0.279 1.279 27 H -0.294 1.294 28 H -0.277 1.277 29 C 0.146 3.854 30 C -0.087 4.087 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.194 0.806 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.199 0.801 41 H 0.410 0.590 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.050 0.950 45 H 0.070 0.930 46 H -0.002 1.002 47 H 0.055 0.945 48 H 0.250 0.750 49 H 0.017 0.983 50 H 0.051 0.949 51 H 0.080 0.920 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -5.544 -24.622 25.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.126 0.874 4 C -0.050 4.050 5 C -0.254 4.254 6 C -0.136 4.136 7 N -0.159 5.159 8 N -0.165 5.165 9 C -0.047 4.047 10 C -0.088 4.088 11 C 0.308 3.692 12 O -0.460 6.460 13 N -0.340 5.340 14 C -0.019 4.019 15 H 0.142 0.858 16 C -0.210 4.210 17 C -0.118 4.118 18 C -0.126 4.126 19 C 0.053 3.947 20 N -0.331 5.331 21 C -0.394 4.394 22 H 0.080 0.920 23 C -0.244 4.244 24 N -0.578 5.578 25 Si 0.792 3.208 26 H -0.205 1.205 27 H -0.220 1.220 28 H -0.203 1.203 29 C 0.020 3.980 30 C -0.126 4.126 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.211 0.789 37 H 0.102 0.898 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.216 0.784 41 H 0.247 0.753 42 H 0.118 0.882 43 H 0.125 0.875 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.016 0.984 47 H 0.074 0.926 48 H 0.059 0.941 49 H 0.035 0.965 50 H 0.070 0.930 51 H 0.098 0.902 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.855 -5.527 -25.801 26.400 hybrid contribution 0.408 0.990 1.518 1.857 sum -0.447 -4.537 -24.283 24.708 Atomic orbital electron populations 1.21776 0.91734 1.02867 1.03247 1.21305 0.98556 1.00858 0.90904 0.87414 1.19509 1.00698 0.96931 0.87819 1.20056 0.97541 1.04803 1.03044 1.24101 0.98754 0.98114 0.92675 1.77302 1.03913 1.10523 1.24185 1.48773 1.14206 1.30252 1.23251 1.22150 1.02583 0.87465 0.92501 1.22832 0.99597 0.96837 0.89556 1.21217 0.78906 0.83948 0.85126 1.90662 1.39818 1.28235 1.87302 1.45445 1.52670 1.31484 1.04445 1.21659 1.00763 0.98954 0.80511 0.85773 1.23607 0.95595 1.00769 1.01047 1.21808 0.99076 0.93324 0.97636 1.21519 0.99866 0.93130 0.98125 1.20560 0.87966 0.98865 0.87261 1.44232 1.37798 1.02245 1.48851 1.19455 0.92979 0.98704 1.28254 0.92023 1.25756 0.96097 1.02554 1.00025 1.70170 1.07183 1.28191 1.52229 0.85403 0.77738 0.79427 0.78253 1.20505 1.21965 1.20293 1.20981 0.97160 0.84845 0.94987 1.21520 0.95939 1.00261 0.94897 0.92076 0.91700 0.90673 0.91217 0.91406 0.78879 0.89841 0.86973 0.89299 0.78439 0.75301 0.88245 0.87454 0.93172 0.91111 0.98352 0.92645 0.94096 0.96525 0.93043 0.90159 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.81 71.98 0.63 -1.32 16 2 C -0.09 -1.59 2.71 -11.54 -0.03 -1.62 16 3 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 4 C -0.01 -0.18 4.52 29.85 0.13 -0.04 16 5 C -0.24 -3.94 4.78 -20.15 -0.10 -4.03 16 6 C 0.05 0.85 10.63 85.24 0.91 1.76 16 7 N -0.34 -6.85 12.58 -57.02 -0.72 -7.57 16 8 N -0.38 -5.91 4.01 -369.58 -1.48 -7.39 16 9 C 0.09 0.67 11.47 127.77 1.47 2.14 16 10 C 0.06 0.82 11.40 83.54 0.95 1.77 16 11 C 0.52 12.28 7.15 87.66 0.63 12.91 16 12 O -0.58 -18.04 15.49 -3.03 -0.05 -18.08 16 13 N -0.69 -15.86 5.24 -442.77 -2.32 -18.18 16 14 C 0.09 2.32 6.13 44.94 0.28 2.60 16 15 H 0.12 3.56 7.40 -2.39 -0.02 3.54 16 16 C -0.17 -4.50 9.87 30.58 0.30 -4.20 16 17 C -0.12 -3.60 1.94 -52.14 -0.10 -3.70 16 18 C -0.09 -3.05 5.37 30.77 0.17 -2.89 16 19 C 0.18 8.35 5.40 86.43 0.47 8.81 16 20 N -0.61 -30.17 2.94 -698.90 -2.05 -32.22 16 21 C -0.26 -14.44 9.54 84.03 0.80 -13.64 16 22 H 0.06 3.32 7.89 -2.91 -0.02 3.30 16 23 C -0.05 -2.70 4.89 84.86 0.41 -2.29 16 24 N -0.93 -54.40 11.23 21.65 0.24 -54.16 16 25 Si 0.96 44.47 29.59 68.60 2.03 46.50 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 28 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 29 C 0.15 5.98 6.52 86.43 0.56 6.55 16 30 C -0.09 -2.87 5.83 30.77 0.18 -2.70 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.84 7.56 -2.39 -0.02 0.82 16 33 H 0.07 1.01 6.41 -2.39 -0.02 1.00 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.28 7.96 -2.38 -0.02 1.26 16 36 H 0.19 2.53 8.06 -2.91 -0.02 2.50 16 37 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.20 1.57 8.06 -2.91 -0.02 1.54 16 41 H 0.41 8.06 6.53 -92.70 -0.61 7.45 16 42 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 43 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 44 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.07 2.05 6.75 -2.39 -0.02 2.03 16 46 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 47 H 0.06 2.95 5.93 -2.39 -0.01 2.93 16 48 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 49 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 50 H 0.05 2.09 7.92 -2.39 -0.02 2.07 16 51 H 0.08 2.21 8.10 -2.39 -0.02 2.19 16 52 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -72.71 413.96 3.62 -69.09 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.30 Total: 21.89 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 7.66 Total: 0.11 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -6.33 Total: -119.52 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.05 Total: -18.08 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -72.71 3.62 -69.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490605027.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.784 kcal (2) G-P(sol) polarization free energy of solvation -72.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds